Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0032269

Physical Location & Seq

Genomic Coordinates Forward (+)

49651505 .. 49657924

Gene Structure 6420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG238300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGGGAGCCAATGCTCCAAACTCATACCATGCTGTGGGGATTCACAATTCAATGCAGCAGCGGTTCTTGAAGCTCCCGCTATTGAAAATGTGGAGAAGAGCGAGGTCGACTACTTGCCTAGATTTTGTGAATTCACGCTTGAGCAACTTAAAAATGCCACATCTGGTTTTGCAGTGGAGTACATTGTGTCTGAACAGGGAGAGAAGGCTCCAAATGTTGTTTATAAAGGGAAATTGGAAAACCAGATGAGAATTGCTGTTAAGCGCTTCAATAGGGTGGCTTGGCCTGATGCTCGGCAATTTGTGGAAGAGGCAAGATTGGTTGGTCAGCTCCGCAACCATAGATTGGTAAATTTGCTTGGCTGCTGCTGCCAAGGTGATGAGAGGTTGCTTGTGGCGGAATATATGCCCAATGACACACTTGCAAAACACCTTTTCCATTGGGATGCACAGCCTATGAAATGGACAATGAGATTGAGGGTTGTTTTACATCTTGCACAAGCCCTAGAATACTGCACAAGCAAGGGGCGTGCCCTTTATCATGACCTTAATGCTTACAGAGTTTTATTTGATGAGAATAGTAATCCTAGAATATCTACCTTTGGCCTGATGAAAAATAGTAGGGACGGGAAGAGTTATAGTACAAATCTGGCATTTACTCCTCCTGAATATCTTAGAACTGGGAGAGTGACACCAGAAAGTGTGATATACAGCTTTGGAACTCTTTTACTTGATCTTCTCAGTGGAAAGCATATTCCCCCTAGTCATGCCCTAGACCTTATTCGAGACAGAAATCTTCAGATGCTGACAGATTCTTGCTTGGAAGGACAGCTGTCTCAAGATGATGGTACTGAATTGGTACGCTTGGCTTCACGATGTTTACAATCTGAACCCCGAGAGCGACCAAATCCTAAGTCATTAGTTGCTGCTTTGACTACTCTTCAGAAAGAAACTGAGATTCCTTCTCATGTTTTGATGGGTATCCCGCACACTAACTCCTGCTCTCCTCTTTCACCACTTGGTGAAGCCTGCTCCAGAAAGGATTTGACTGCAATCCATGAGATCCTAGAGAATATCGGCTATAAAGATGATGGAATGACAAATGAGGTTCTATTTATTTTTTGTGGACAATTGCTTAATAGGTTGTACTATAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

385

Amino Acids

43.44

Weight (kDa)

6.38

Isoelectric Point (pI)

38.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	73 - 310	9.6e-30	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	73 - 308	6.5e-24	Protein kinase domain
TPR_BSK1_C	PF25575	342 - 372	4.1e-08	Serine/threonine-protein kinase BSK1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0032269)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0243700
rosa_samantha	Rh1CG238300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	225
AccB7I	CCANNNNNTGG	2 cut(s)	35, 346
AccI	GTMKAC	1 cut(s)	108
AciI	CCGC	5 cut(s)	62, 78, 334, 398, 986
AclWI	GGATC	1 cut(s)	1057
AcsI	RAATTY	2 cut(s)	131, 352
AcuI	CTGAAG	2 cut(s)	782, 926
AdeI	CACNNNGTG	1 cut(s)	1022
AfaI	GTAC	5 cut(s)	182, 643, 850, 861, 1148
AfeI	AGCGCT	1 cut(s)	266
AfiI	CCNNNNNNNGG	2 cut(s)	35, 346
AgsI	TTSAA	4 cut(s)	52, 71, 86, 271
AluBI	AGCT	4 cut(s)	74, 331, 714, 832
AluI	AGCT	4 cut(s)	74, 331, 714, 832
Alw26I	GTCTC	2 cut(s)	780, 840
AlwI	GGATC	1 cut(s)	1057
AlwNI	CAGNNNCTG	1 cut(s)	805
Ama87I	CYCGRG	1 cut(s)	894
Aor51HI	AGCGCT	1 cut(s)	266
AoxI	GGCC	2 cut(s)	284, 604
ApeKI	GCWGC	6 cut(s)	56, 59, 363, 366, 369, 926
ApoI	RAATTY	2 cut(s)	131, 352
ArsI	GACNNNNNNTTYG	2 cut(s)	899, 931
AspLEI	GCGC	1 cut(s)	267
AsuHPI	GGTGA	3 cut(s)	389, 1005, 1034
AvaI	CYCGRG	1 cut(s)	894
BaeGI	GKGCMC	1 cut(s)	535
BbvI	GCAGC	6 cut(s)	68, 71, 350, 353, 356, 913
BccI	CCATC	3 cut(s)	839, 970, 1085
BciVI	GTATCC	1 cut(s)	992
BcoDI	GTCTC	2 cut(s)	780, 840
BfaI	CTAG	6 cut(s)	120, 506, 588, 762, 773, 1067
BfoI	RGCGCY	1 cut(s)	268
BfuI	GTATCC	1 cut(s)	992
BisI	GCNGC	6 cut(s)	57, 60, 364, 367, 370, 927
BlsI	GCNGC	6 cut(s)	58, 61, 365, 368, 371, 928
BmeT110I	CYCGRG	1 cut(s)	894
BmiI	GGNNCC	2 cut(s)	8, 210
BmrI	ACTGGG	1 cut(s)	690
BmsI	GCATC	3 cut(s)	280, 436, 792
BmuI	ACTGGG	1 cut(s)	690
BoxI	GACNNNNGTC	1 cut(s)	832
BpmI	CTGGAG	1 cut(s)	1018
BpuEI	CTTGAG	2 cut(s)	161, 822
BsaBI	GATNNNNATC	1 cut(s)	980
BsaJI	CCNNGG	1 cut(s)	373
BsaXI	ACNNNNNCTCC	2 cut(s)	980, 1010
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 346
Bse1I	ACTGG	1 cut(s)	685
Bse8I	GATNNNNATC	1 cut(s)	980
BseDI	CCNNGG	1 cut(s)	373
BseGI	GGATG	1 cut(s)	451
BseJI	GATNNNNATC	1 cut(s)	980
BseLI	CCNNNNNNNGG	2 cut(s)	35, 346
BseMII	CTCAG	2 cut(s)	754, 945
BseNI	ACTGG	1 cut(s)	685
BseRI	GAGGAG	2 cut(s)	651, 996
BseSI	GKGCMC	1 cut(s)	535
BseXI	GCAGC	6 cut(s)	68, 71, 350, 353, 356, 913
BsgI	GTGCAG	1 cut(s)	499
BshFI	GGCC	2 cut(s)	286, 606
BsiHKCI	CYCGRG	1 cut(s)	894
BslFI	GGGAC	1 cut(s)	638
BslI	CCNNNNNNNGG	2 cut(s)	35, 346
BsmAI	GTCTC	2 cut(s)	780, 840
BsmFI	GGGAC	1 cut(s)	638
BsnI	GGCC	2 cut(s)	286, 606
BsoBI	CYCGRG	1 cut(s)	894
Bsp1286I	GDGCHC	1 cut(s)	535
Bsp143I	GATC	2 cut(s)	733, 1062
BspACI	CCGC	5 cut(s)	62, 78, 334, 398, 986
BspANI	GGCC	2 cut(s)	286, 606
BspCNI	CTCAG	2 cut(s)	753, 946
BspHI	TCATGA	1 cut(s)	541
BspLI	GGNNCC	2 cut(s)	8, 210
BspPI	GGATC	1 cut(s)	1057
BspQI	GCTCTTC	1 cut(s)	92
BsrI	ACTGG	1 cut(s)	685
BssECI	CCNNGG	1 cut(s)	373
BssMI	GATC	2 cut(s)	733, 1062
BssT1I	CCWWGG	1 cut(s)	373
Bst6I	CTCTTC	4 cut(s)	92, 303, 626, 945
BstC8I	GCNNGC	2 cut(s)	531, 1030
BstDEI	CTNAG	4 cut(s)	674, 740, 912, 954
BstF5I	GGATG	1 cut(s)	451
BstH2I	RGCGCY	1 cut(s)	268
BstHHI	GCGC	1 cut(s)	267
BstKTI	GATC	2 cut(s)	736, 1065
BstMAI	GTCTC	2 cut(s)	780, 840
BstMBI	GATC	2 cut(s)	733, 1062
BstMWI	GCNNNNNNNGC	1 cut(s)	369
BstPAI	GACNNNNGTC	1 cut(s)	832
BstSLI	GKGCMC	1 cut(s)	535
BstV1I	GCAGC	6 cut(s)	68, 71, 350, 353, 356, 913
BstX2I	RGATCY	1 cut(s)	1062
BstYI	RGATCY	1 cut(s)	1062
BsuI	GTATCC	1 cut(s)	992
BsuRI	GGCC	2 cut(s)	286, 606
BtsCI	GGATG	1 cut(s)	451
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	2 cut(s)	180, 748
Cac8I	GCNNGC	2 cut(s)	531, 1030
CaiI	CAGNNNCTG	1 cut(s)	805
CciI	TCATGA	1 cut(s)	541
CfoI	GCGC	1 cut(s)	267
Csp6I	GTAC	5 cut(s)	181, 642, 849, 860, 1147
CviAII	CATG	5 cut(s)	30, 542, 767, 968, 1058
CviQI	GTAC	5 cut(s)	181, 642, 849, 860, 1147
DdeI	CTNAG	4 cut(s)	674, 740, 912, 954
DpnI	GATC	2 cut(s)	735, 1064
DpnII	GATC	2 cut(s)	733, 1062
DraIII	CACNNNGTG	1 cut(s)	1022
Eam1104I	CTCTTC	4 cut(s)	92, 303, 626, 945
EarI	CTCTTC	4 cut(s)	92, 303, 626, 945
EciI	GGCGGA	1 cut(s)	413
Eco130I	CCWWGG	1 cut(s)	373
Eco47III	AGCGCT	1 cut(s)	266
Eco57I	CTGAAG	2 cut(s)	782, 926
Eco88I	CYCGRG	1 cut(s)	894
EcoRI	GAATTC	1 cut(s)	131
EcoT14I	CCWWGG	1 cut(s)	373
ErhI	CCWWGG	1 cut(s)	373
FaeI	CATG	5 cut(s)	33, 545, 770, 971, 1061
FaqI	GGGAC	1 cut(s)	638
FatI	CATG	5 cut(s)	29, 541, 766, 967, 1057
FauI	CCCGC	2 cut(s)	85, 993
FblI	GTMKAC	1 cut(s)	108
Fnu4HI	GCNGC	6 cut(s)	57, 60, 364, 367, 370, 927
FokI	GGATG	1 cut(s)	458
Fsp4HI	GCNGC	6 cut(s)	57, 60, 364, 367, 370, 927
FspBI	CTAG	6 cut(s)	120, 506, 588, 762, 773, 1067
GlaI	GCGC	1 cut(s)	266
GluI	GCNGC	6 cut(s)	57, 60, 364, 367, 370, 927
GsuI	CTGGAG	1 cut(s)	1018
HaeII	RGCGCY	1 cut(s)	268
HaeIII	GGCC	2 cut(s)	286, 606
HhaI	GCGC	1 cut(s)	267
Hin1II	CATG	5 cut(s)	33, 545, 770, 971, 1061
Hin6I	GCGC	1 cut(s)	265
HinP1I	GCGC	1 cut(s)	265
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HinfI	GANTC	3 cut(s)	41, 812, 958
HphI	GGTGA	3 cut(s)	389, 1005, 1034
Hpy166II	GTNNAC	3 cut(s)	109, 881, 1127
Hpy188I	TCNGA	4 cut(s)	193, 801, 889, 945
Hpy188III	TCNNGA	7 cut(s)	68, 542, 665, 785, 839, 873, 1035
Hpy8I	GTNNAC	3 cut(s)	109, 881, 1127
HpyAV	CCTTC	3 cut(s)	199, 818, 972
HpyCH4V	TGCA	7 cut(s)	56, 173, 425, 449, 497, 516, 1052
HpyF10VI	GCNNNNNNNGC	1 cut(s)	369
HpyF3I	CTNAG	4 cut(s)	674, 740, 912, 954
Hsp92II	CATG	5 cut(s)	33, 545, 770, 971, 1061
HspAI	GCGC	1 cut(s)	265
Kzo9I	GATC	2 cut(s)	733, 1062
LguI	GCTCTTC	1 cut(s)	92
LmnI	GCTCC	6 cut(s)	6, 20, 79, 214, 336, 1037
Lsp1109I	GCAGC	6 cut(s)	68, 71, 350, 353, 356, 913
LweI	GCATC	3 cut(s)	280, 436, 792
MaeI	CTAG	6 cut(s)	120, 506, 588, 762, 773, 1067
MaeIII	GTNAC	1 cut(s)	688
MalI	GATC	2 cut(s)	735, 1064
MboI	GATC	2 cut(s)	733, 1062
MboII	GAAGA	6 cut(s)	109, 320, 643, 728, 788, 932
MfeI	CAATTG	1 cut(s)	1130
MflI	RGATCY	1 cut(s)	1062
MhlI	GDGCHC	1 cut(s)	535
MluCI	AATT	8 cut(s)	47, 131, 233, 252, 299, 352, 854, 1130
MnlI	CCTC	7 cut(s)	97, 304, 378, 471, 672, 1017, 1099
MseI	TTAA	4 cut(s)	150, 261, 549, 1137
MslI	CAYNNNNRTG	1 cut(s)	444
MspA1I	CMGCKG	2 cut(s)	62, 832
MunI	CAATTG	1 cut(s)	1130
MwoI	GCNNNNNNNGC	1 cut(s)	369
NdeII	GATC	2 cut(s)	733, 1062
NlaIII	CATG	5 cut(s)	33, 545, 770, 971, 1061
NlaIV	GGNNCC	2 cut(s)	8, 210
NmeAIII	GCCGAG	1 cut(s)	274
NmuCI	GTSAC	1 cut(s)	688
PagI	TCATGA	1 cut(s)	541
PciSI	GCTCTTC	1 cut(s)	92
PfeI	GAWTC	3 cut(s)	41, 812, 958
PflMI	CCANNNNNTGG	2 cut(s)	35, 346
PkrI	GCNGC	6 cut(s)	58, 61, 365, 368, 371, 928
PshAI	GACNNNNGTC	1 cut(s)	832
PsiI	TTATAA	1 cut(s)	225
PspN4I	GGNNCC	2 cut(s)	8, 210
PstNI	CAGNNNCTG	1 cut(s)	805
PsuI	RGATCY	1 cut(s)	1062
PvuII	CAGCTG	1 cut(s)	832
RsaI	GTAC	5 cut(s)	182, 643, 850, 861, 1148
RsaNI	GTAC	5 cut(s)	181, 642, 849, 860, 1147
RseI	CAYNNNNRTG	1 cut(s)	444
SalI	GTCGAC	1 cut(s)	107
SapI	GCTCTTC	1 cut(s)	92
SaqAI	TTAA	4 cut(s)	150, 261, 549, 1137
SatI	GCNGC	6 cut(s)	57, 60, 364, 367, 370, 927
Sau3AI	GATC	2 cut(s)	733, 1062
SduI	GDGCHC	1 cut(s)	535
SfaNI	GCATC	3 cut(s)	280, 436, 792
SmiMI	CAYNNNNRTG	1 cut(s)	444
SmlI	CTYRAG	2 cut(s)	140, 837
SmoI	CTYRAG	2 cut(s)	140, 837
Sse9I	AATT	8 cut(s)	47, 131, 233, 252, 299, 352, 854, 1130
SsiI	CCGC	5 cut(s)	62, 78, 334, 398, 986
SspMI	CTAG	6 cut(s)	120, 506, 588, 762, 773, 1067
StyI	CCWWGG	1 cut(s)	373
TaqI	TCGA	2 cut(s)	108, 784
TasI	AATT	8 cut(s)	47, 131, 233, 252, 299, 352, 854, 1130
TatI	WGTACW	3 cut(s)	180, 641, 1146
TfiI	GAWTC	3 cut(s)	41, 812, 958
Tru1I	TTAA	4 cut(s)	150, 261, 549, 1137
Tru9I	TTAA	4 cut(s)	150, 261, 549, 1137
TscAI	CASTG	2 cut(s)	180, 748
TseFI	GTSAC	1 cut(s)	688
TseI	GCWGC	6 cut(s)	56, 59, 363, 366, 369, 926
Tsp45I	GTSAC	1 cut(s)	688
TspDTI	ATGAA	2 cut(s)	473, 626
TspRI	CASTG	2 cut(s)	180, 748
Van91I	CCANNNNNTGG	2 cut(s)	35, 346
XapI	RAATTY	2 cut(s)	131, 352
XmiI	GTMKAC	1 cut(s)	108
XspI	CTAG	6 cut(s)	120, 506, 588, 762, 773, 1067

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.