Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007594

Physical Location & Seq

Genomic Coordinates Forward (+)

34944836 .. 34949494

Gene Structure 4659 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0243700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGAAGTGGGAAGGTTACCGCTCTCAGCATCACAAAGAGGCAAGCTCATATCAGCGGGATACACTACTCTAGCTTCGCTCTCATCCATCTCTCCCTCCGACCTCGCTCGAGATTTAAAAGTTCCAGAGAGTGAAGCTTTTGAAATGCTCAAGGTTGCAAAACTTGGTTGTGGGTTGGAACAGCCAGATAAACATACGGCCATTGTCAATGGTGCACAAACTGCTTGGGATATCCTCAATGAGGAGAAGTTGTTACCACGCATTACTACATCTTGTGCCGATCTTGACAAAATTCTCGGTGGGGGAATTAATTGTAAAGAAGTTACTGAAATTGGTGGAGTTCCAGGCATTGGTAAAACACAGCTTGGGATTCAACTTGCAGTGAATGTGCAAATTCCTGTTGATTGTGGTGGACTAGGTGGAAAAGCAGTATATATTGATACTGAGGGCAGCTTTATGGTGGAGCGGGCTCTTCAAATTGCTGAAGCTTCTGTAGTAAACTGGTCATCTTATAGTGAACTTTTGCGGAAGGAATCCCAAGCTTGCCGAGTTGAAATACAGCCTACTGATATCCTGGAAAAGATATATTATTTTCGGATTTGCACTTCCACAGAGCAAATTGCCCTGATAAATTACTTGGACCAATTCATCTCGGAGCATAAAGATGTTAAGATTGTTATCATTGATAGTGTTACTTTTCACTTTCGCCAAGATTTTGAGGACTTTGCTCTCAGGAATCGATTACTTGGTGGAATGGCCTTAAAGTTGATGAACCTTGGAAAAAAGTACAATCTGGCGGTTGTCATATTCAATCAAGTAACGACTAAGTGTACAGAAGGTTCATTCCAATTGAGTCTAGCATTGGGTGATAGCTGGTCACATTGTTGTACAAATCGAGTCATATTGTATTGGAATGGTGATGAACGGAATGCATACATAGACAAGTCACCTTCTTTACGATCCGCATCAGCCTCATTTTCTGTGACCAGTGGAGGGATTAGGAATTCTGCTTCAAAACACAAACGAATCAGAGTGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

346

Amino Acids

37.98

Weight (kDa)

6.95

Isoelectric Point (pI)

35.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad51	PF08423	87 - 165	2e-20	Rad51
DnaB_C	PF03796	88 - 277	6.4e-07	DnaB-like helicase C terminal domain
ATPase	PF06745	90 - 274	1.1e-08	KaiC
Rad51	PF08423	180 - 335	4.6e-17	Rad51

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01740 AT1G01740 AT4G00710 AT4G00710
fragaria_vesca	FvH4_7g14010 FvH4_7g14010 FvH4_7g14010 FvH4_7g14010 FvH4_7g14010
malus_domestica	MD01G1056600.v1.1
prunus_persica	Prupe.2G167300_v2.0.a1
pyrus_communis	pycom01g08210 pycom01g08290 pycom01g08460
rosa_chinensis	RchiOBHm_Chr1g0354661
rosa_laevigata	RLG00000028189
rosa_multiflora	Rmu_sc0003940.1_g000008 Rmu_sc0006632.1_g000013
rosa_roxburghii	Rroxscaffold_4G00300860
rosa_rugosa	Rorug01G0243700
rosa_samantha	Rh1AG255000 Rh1AG255800 Rh1DG253600
rosa_wichuraiana	Rw1G022310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	350
AccBSI	CCGCTC	2 cut(s)	22, 466
AciI	CCGC	6 cut(s)	20, 56, 466, 526, 797, 963
AclWI	GGATC	1 cut(s)	954
AcoI	YGGCCR	1 cut(s)	198
AcsI	RAATTY	3 cut(s)	291, 393, 1003
AcuI	CTGAAG	1 cut(s)	504
AfaI	GTAC	3 cut(s)	788, 832, 889
AfiI	CCNNNNNNNGG	3 cut(s)	241, 350, 993
AgsI	TTSAA	6 cut(s)	143, 374, 476, 554, 811, 1014
AjnI	CCWGG	2 cut(s)	343, 573
AluBI	AGCT	8 cut(s)	46, 74, 137, 364, 453, 488, 542, 873
AluI	AGCT	8 cut(s)	46, 74, 137, 364, 453, 488, 542, 873
Alw21I	GWGCWC	1 cut(s)	217
Alw44I	GTGCAC	1 cut(s)	213
AlwI	GGATC	1 cut(s)	954
Ama87I	CYCGRG	1 cut(s)	108
AoxI	GGCC	2 cut(s)	198, 756
ApaLI	GTGCAC	1 cut(s)	213
ApeKI	GCWGC	1 cut(s)	450
ApoI	RAATTY	3 cut(s)	291, 393, 1003
AseI	ATTAAT	1 cut(s)	309
AspS9I	GGNCC	1 cut(s)	640
AsuHPI	GGTGA	3 cut(s)	878, 929, 939
AvaI	CYCGRG	1 cut(s)	108
AvaII	GGWCC	1 cut(s)	640
BaeGI	GKGCMC	1 cut(s)	217
BanII	GRGCYC	1 cut(s)	472
Bbv12I	GWGCWC	1 cut(s)	217
BbvI	GCAGC	1 cut(s)	462
BccI	CCATC	1 cut(s)	95
BceAI	ACGGC	1 cut(s)	213
BciT130I	CCWGG	2 cut(s)	345, 575
BciVI	GTATCC	1 cut(s)	53
BfaI	CTAG	3 cut(s)	71, 416, 857
BfmI	CTRYAG	1 cut(s)	492
BfuI	GTATCC	1 cut(s)	53
BisI	GCNGC	1 cut(s)	451
BlsI	GCNGC	1 cut(s)	452
Bme1390I	CCNGG	2 cut(s)	345, 575
Bme18I	GGWCC	1 cut(s)	640
BmeT110I	CYCGRG	1 cut(s)	108
BmgT120I	GGNCC	1 cut(s)	640
BmrFI	CCNGG	2 cut(s)	345, 575
BmsI	GCATC	2 cut(s)	38, 974
BplI	GAGNNNNNCTC	2 cut(s)	30, 62
BpuEI	CTTGAG	1 cut(s)	134
Bsa29I	ATCGAT	1 cut(s)	739
BsaBI	GATNNNNATC	2 cut(s)	677, 964
BsaJI	CCNNGG	1 cut(s)	775
BsaXI	ACNNNNNCTCC	2 cut(s)	236, 266
Bsc4I	CCNNNNNNNGG	3 cut(s)	241, 350, 993
Bse1I	ACTGG	2 cut(s)	506, 987
Bse8I	GATNNNNATC	2 cut(s)	677, 964
BseBI	CCWGG	2 cut(s)	345, 575
BseCI	ATCGAT	1 cut(s)	739
BseDI	CCNNGG	1 cut(s)	775
BseGI	GGATG	1 cut(s)	83
BseJI	GATNNNNATC	2 cut(s)	677, 964
BseLI	CCNNNNNNNGG	3 cut(s)	241, 350, 993
BseMII	CTCAG	3 cut(s)	39, 435, 745
BseNI	ACTGG	2 cut(s)	506, 987
BseRI	GAGGAG	1 cut(s)	257
BseSI	GKGCMC	1 cut(s)	217
BseXI	GCAGC	1 cut(s)	462
BshFI	GGCC	2 cut(s)	200, 758
BshVI	ATCGAT	1 cut(s)	739
BsiHKAI	GWGCWC	1 cut(s)	217
BsiHKCI	CYCGRG	1 cut(s)	108
BslI	CCNNNNNNNGG	3 cut(s)	241, 350, 993
BsmI	GAATGC	1 cut(s)	934
BsnI	GGCC	2 cut(s)	200, 758
BsoBI	CYCGRG	1 cut(s)	108
Bsp1286I	GDGCHC	2 cut(s)	217, 472
Bsp1407I	TGTACA	2 cut(s)	830, 887
Bsp143I	GATC	2 cut(s)	280, 959
BspACI	CCGC	6 cut(s)	20, 56, 466, 526, 797, 963
BspANI	GGCC	2 cut(s)	200, 758
BspCNI	CTCAG	3 cut(s)	38, 436, 744
BspDI	ATCGAT	1 cut(s)	739
BspPI	GGATC	1 cut(s)	954
BspQI	GCTCTTC	1 cut(s)	477
BsrBI	CCGCTC	2 cut(s)	22, 466
BsrGI	TGTACA	2 cut(s)	830, 887
BsrI	ACTGG	2 cut(s)	506, 987
BssECI	CCNNGG	1 cut(s)	775
BssMI	GATC	2 cut(s)	280, 959
BssT1I	CCWWGG	1 cut(s)	775
Bst2UI	CCWGG	2 cut(s)	345, 575
Bst6I	CTCTTC	1 cut(s)	477
BstAPI	GCANNNNNTGC	1 cut(s)	221
BstAUI	TGTACA	2 cut(s)	830, 887
BstC8I	GCNNGC	3 cut(s)	44, 468, 544
BstDEI	CTNAG	4 cut(s)	25, 444, 731, 825
BstEII	GGTNACC	1 cut(s)	15
BstENI	CCTNNNNNAGG	1 cut(s)	239
BstF5I	GGATG	1 cut(s)	83
BstKTI	GATC	2 cut(s)	283, 962
BstMBI	GATC	2 cut(s)	280, 959
BstMWI	GCNNNNNNNGC	1 cut(s)	221
BstNI	CCWGG	2 cut(s)	345, 575
BstPI	GGTNACC	1 cut(s)	15
BstSCI	CCNGG	2 cut(s)	343, 573
BstSFI	CTRYAG	1 cut(s)	492
BstSLI	GKGCMC	1 cut(s)	217
BstV1I	GCAGC	1 cut(s)	462
Bsu15I	ATCGAT	1 cut(s)	739
BsuI	GTATCC	1 cut(s)	53
BsuRI	GGCC	2 cut(s)	200, 758
BsuTUI	ATCGAT	1 cut(s)	739
BtsCI	GGATG	1 cut(s)	83
BtsI	GCAGTG	1 cut(s)	387
BtsIMutI	CAGTG	2 cut(s)	387, 994
Cac8I	GCNNGC	3 cut(s)	44, 468, 544
Cfr13I	GGNCC	1 cut(s)	640
ClaI	ATCGAT	1 cut(s)	739
Csp6I	GTAC	3 cut(s)	787, 831, 888
CviQI	GTAC	3 cut(s)	787, 831, 888
DdeI	CTNAG	4 cut(s)	25, 444, 731, 825
DpnI	GATC	2 cut(s)	282, 961
DpnII	GATC	2 cut(s)	280, 959
DraI	TTTAAA	1 cut(s)	117
EaeI	YGGCCR	1 cut(s)	198
Eam1104I	CTCTTC	1 cut(s)	477
EarI	CTCTTC	1 cut(s)	477
Eco130I	CCWWGG	1 cut(s)	775
Eco24I	GRGCYC	1 cut(s)	472
Eco32I	GATATC	2 cut(s)	232, 571
Eco47I	GGWCC	1 cut(s)	640
Eco57I	CTGAAG	1 cut(s)	504
Eco88I	CYCGRG	1 cut(s)	108
Eco91I	GGTNACC	1 cut(s)	15
EcoNI	CCTNNNNNAGG	1 cut(s)	239
EcoO65I	GGTNACC	1 cut(s)	15
EcoRI	GAATTC	1 cut(s)	1003
EcoRII	CCWGG	2 cut(s)	343, 573
EcoRV	GATATC	2 cut(s)	232, 571
EcoT14I	CCWWGG	1 cut(s)	775
EcoT22I	ATGCAT	1 cut(s)	934
EcoT38I	GRGCYC	1 cut(s)	472
ErhI	CCWWGG	1 cut(s)	775
FauI	CCCGC	2 cut(s)	49, 459
Fnu4HI	GCNGC	1 cut(s)	451
FokI	GGATG	1 cut(s)	70
FriOI	GRGCYC	1 cut(s)	472
Fsp4HI	GCNGC	1 cut(s)	451
FspBI	CTAG	3 cut(s)	71, 416, 857
GluI	GCNGC	1 cut(s)	451
HaeIII	GGCC	2 cut(s)	200, 758
HindIII	AAGCTT	3 cut(s)	135, 486, 540
HinfI	GANTC	6 cut(s)	370, 533, 736, 853, 897, 1026
HphI	GGTGA	3 cut(s)	878, 929, 939
Hpy166II	GTNNAC	5 cut(s)	215, 413, 499, 518, 831
Hpy188I	TCNGA	4 cut(s)	100, 597, 655, 1031
Hpy188III	TCNNGA	4 cut(s)	110, 125, 284, 733
Hpy8I	GTNNAC	5 cut(s)	215, 413, 499, 518, 831
HpyAV	CCTTC	4 cut(s)	6, 523, 830, 960
HpyCH4V	TGCA	6 cut(s)	158, 215, 380, 391, 603, 932
HpyF10VI	GCNNNNNNNGC	1 cut(s)	221
HpyF3I	CTNAG	4 cut(s)	25, 444, 731, 825
Kzo9I	GATC	2 cut(s)	280, 959
LguI	GCTCTTC	1 cut(s)	477
LmnI	GCTCC	2 cut(s)	463, 655
Lsp1109I	GCAGC	1 cut(s)	462
LweI	GCATC	2 cut(s)	38, 974
MaeI	CTAG	3 cut(s)	71, 416, 857
MaeIII	GTNAC	8 cut(s)	15, 252, 322, 691, 817, 876, 945, 982
MalI	GATC	2 cut(s)	282, 961
MbiI	CCGCTC	2 cut(s)	22, 466
MboI	GATC	2 cut(s)	280, 959
MboII	GAAGA	1 cut(s)	464
MfeI	CAATTG	1 cut(s)	848
MhlI	GDGCHC	2 cut(s)	217, 472
MlyI	GAGTC	2 cut(s)	862, 906
MmeI	TCCRAC	2 cut(s)	123, 156
MnlI	CCTC	9 cut(s)	32, 106, 113, 235, 245, 439, 712, 982, 986
Mph1103I	ATGCAT	1 cut(s)	934
MseI	TTAA	4 cut(s)	116, 309, 669, 761
MslI	CAYNNNNRTG	1 cut(s)	663
MspA1I	CMGCKG	1 cut(s)	56
MspR9I	CCNGG	2 cut(s)	345, 575
MunI	CAATTG	1 cut(s)	848
Mva1269I	GAATGC	1 cut(s)	934
MvaI	CCWGG	2 cut(s)	345, 575
MwoI	GCNNNNNNNGC	1 cut(s)	221
NdeII	GATC	2 cut(s)	280, 959
NmeAIII	GCCGAG	1 cut(s)	572
NmuCI	GTSAC	3 cut(s)	876, 945, 982
NsiI	ATGCAT	1 cut(s)	934
PaeR7I	CTCGAG	1 cut(s)	108
PciSI	GCTCTTC	1 cut(s)	477
PctI	GAATGC	1 cut(s)	934
PfeI	GAWTC	4 cut(s)	370, 533, 736, 1026
PflMI	CCANNNNNTGG	1 cut(s)	350
PfoI	TCCNGGA	1 cut(s)	573
PkrI	GCNGC	1 cut(s)	452
PleI	GAGTC	2 cut(s)	861, 905
PpsI	GAGTC	2 cut(s)	861, 905
PshBI	ATTAAT	1 cut(s)	309
Psp6I	CCWGG	2 cut(s)	343, 573
PspEI	GGTNACC	1 cut(s)	15
PspGI	CCWGG	2 cut(s)	343, 573
PspPI	GGNCC	1 cut(s)	640
PsrI	GAACNNNNNNTAC	2 cut(s)	823, 855
RsaI	GTAC	3 cut(s)	788, 832, 889
RsaNI	GTAC	3 cut(s)	787, 831, 888
RseI	CAYNNNNRTG	1 cut(s)	663
SapI	GCTCTTC	1 cut(s)	477
SaqAI	TTAA	4 cut(s)	116, 309, 669, 761
SatI	GCNGC	1 cut(s)	451
Sau3AI	GATC	2 cut(s)	280, 959
Sau96I	GGNCC	1 cut(s)	640
SchI	GAGTC	2 cut(s)	862, 906
ScrFI	CCNGG	2 cut(s)	345, 575
SduI	GDGCHC	2 cut(s)	217, 472
SfaNI	GCATC	2 cut(s)	38, 974
SfcI	CTRYAG	1 cut(s)	492
Sfr274I	CTCGAG	1 cut(s)	108
SinI	GGWCC	1 cut(s)	640
SlaI	CTCGAG	1 cut(s)	108
SmiMI	CAYNNNNRTG	1 cut(s)	663
SmlI	CTYRAG	2 cut(s)	108, 149
SmoI	CTYRAG	2 cut(s)	108, 149
SsiI	CCGC	6 cut(s)	20, 56, 466, 526, 797, 963
SspMI	CTAG	3 cut(s)	71, 416, 857
StyD4I	CCNGG	2 cut(s)	343, 573
StyI	CCWWGG	1 cut(s)	775
TaqI	TCGA	3 cut(s)	109, 739, 895
TatI	WGTACW	3 cut(s)	786, 830, 887
TfiI	GAWTC	4 cut(s)	370, 533, 736, 1026
Tru1I	TTAA	4 cut(s)	116, 309, 669, 761
Tru9I	TTAA	4 cut(s)	116, 309, 669, 761
TscAI	CASTG	2 cut(s)	387, 994
TseFI	GTSAC	3 cut(s)	876, 945, 982
TseI	GCWGC	1 cut(s)	450
Tsp45I	GTSAC	3 cut(s)	876, 945, 982
TspDTI	ATGAA	4 cut(s)	637, 785, 831, 936
TspGWI	ACGGA	1 cut(s)	940
TspRI	CASTG	2 cut(s)	387, 994
Van91I	CCANNNNNTGG	1 cut(s)	350
VneI	GTGCAC	1 cut(s)	213
VpaK11BI	GGWCC	1 cut(s)	640
VspI	ATTAAT	1 cut(s)	309
XagI	CCTNNNNNAGG	1 cut(s)	239
XapI	RAATTY	3 cut(s)	291, 393, 1003
XhoI	CTCGAG	1 cut(s)	108
XspI	CTAG	3 cut(s)	71, 416, 857
Zsp2I	ATGCAT	1 cut(s)	934

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.