Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0007594

Physical Location & Seq

Genomic Coordinates Forward (+)

47188100 .. 47196989

Gene Structure 8890 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG255800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGAGACTGAGGCACAATCAGCACTGAAGGAGGGTACTCTGCTTGAAGCCAAAAGGAACACTGCAGGGGATGCACAGCCCATGAAATGGACAATGCGATTGAGGGTTGTTTTACATCTTGCAGAAGCCCTAGAATACTGCACAAGCAAGGGGCGTGCCCTTTATCATGACCTTAATGCTTACAGAGTTCTATTTGATGAGAATAGTAATCCTAGAATATCTACCTTTGGCCTGATGAAAAATAGTAGGGACGGGAAGAGTTATAGTACAAATCTGGCATTTACTCCTCCTGAATATCTTAGAACTGGGAGAGTGACACCAGAAAGTGTGATATACAGCTTTGGAACTCTTTTACTTGATCTTCTCAGTGGAAAGCATATTCCCCCTAGTCATGCTCTAGACCTTATTCGAGACAGAAATCTTCAGATGCTGACAGATTCTTGCTTGGAAGGACAGCTGTCTCAAGATGATGGTACTGAATTGGTACGCTTGGCTTCACGATGTTTACAATCTGAACCCCGAGAGCGACCAAATCCCAAATCATTAGTTGCTGCTTTGACAACTCTTCAGAAAGAAACTGAGATTCCTTCTCATGTTTTGATGGGTATCCCGCACACTAACTCCTGCTCTCCAGTTTCACCACTTGGTGAAGCCTGCTCCAGAAGGGATTTGACTGCAATCCATGAGATCCTAGAGAATATCGGCTATAAAGATGATGGAATGACAAATGAGCTCTCGTTCCAAATGTGGACCGACCAAATGCAGGAAACATTAGATTCAAAGAAAAATGGGGATTCTGCTTTTAAGCAGAAGGACTTTAGAACCGCAATCGAATGTTATTCACAGTTCATTGATGTTGGAAACATGGTTTCTCCCACAATTTTTGCCCGGCGTAGTTTGTCTTATCTCATGGATGAGATGCCTCAGGAAGCTCTAAATGATGCAATGCAAGCTCAAGTAATTTCCCCAATATGGCACATTGCATCTTATCTTCAGGCTGCTGCGCTTTCTGCACTAGGAATGGAGACTGAGGCGCAATCAGCACTGAAGGAAGGTACTATGCTTGAAGCCAAAAGGAACACTGCAGCCGGACACAAGGGAAATCAAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

370

Amino Acids

41.14

Weight (kDa)

5.56

Isoelectric Point (pI)

50.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	12 - 185	1.4e-14	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	35 - 183	2.2e-13	Protein kinase domain
TPR_BSK1_C	PF25575	217 - 333	3.8e-62	Serine/threonine-protein kinase BSK1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01740 AT1G01740 AT4G00710 AT4G00710
fragaria_vesca	FvH4_7g14010 FvH4_7g14010 FvH4_7g14010 FvH4_7g14010 FvH4_7g14010
malus_domestica	MD01G1056600.v1.1
prunus_persica	Prupe.2G167300_v2.0.a1
pyrus_communis	pycom01g08210 pycom01g08290 pycom01g08460
rosa_chinensis	RchiOBHm_Chr1g0354661
rosa_laevigata	RLG00000028189
rosa_multiflora	Rmu_sc0003940.1_g000008 Rmu_sc0006632.1_g000013
rosa_roxburghii	Rroxscaffold_4G00300860
rosa_rugosa	Rorug01G0243700
rosa_samantha	Rh1AG255000 Rh1AG255800 Rh1DG253600
rosa_wichuraiana	Rw1G022310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	87
AciI	CCGC	2 cut(s)	611, 825
AclWI	GGATC	1 cut(s)	682
AcuI	CTGAAG	5 cut(s)	47, 407, 551, 977, 1067
AdeI	CACNNNGTG	1 cut(s)	647
AfaI	GTAC	5 cut(s)	37, 268, 475, 486, 1057
AfiI	CCNNNNNNNGG	3 cut(s)	87, 763, 972
AgsI	TTSAA	3 cut(s)	47, 780, 1067
AluBI	AGCT	5 cut(s)	339, 457, 733, 932, 953
AluI	AGCT	5 cut(s)	339, 457, 733, 932, 953
Alw21I	GWGCWC	1 cut(s)	735
Alw26I	GTCTC	3 cut(s)	405, 465, 1019
AlwI	GGATC	1 cut(s)	682
AlwNI	CAGNNNCTG	1 cut(s)	430
Ama87I	CYCGRG	1 cut(s)	519
AoxI	GGCC	1 cut(s)	229
ApeKI	GCWGC	4 cut(s)	551, 998, 1001, 1085
AspLEI	GCGC	2 cut(s)	1006, 1036
AspS9I	GGNCC	1 cut(s)	750
AsuC2I	CCSGG	1 cut(s)	889
AsuHPI	GGTGA	2 cut(s)	630, 659
AvaI	CYCGRG	1 cut(s)	519
AvaII	GGWCC	1 cut(s)	750
AxyI	CCTNAGG	1 cut(s)	924
BaeGI	GKGCMC	1 cut(s)	160
BanII	GRGCYC	1 cut(s)	735
Bbv12I	GWGCWC	1 cut(s)	735
BbvI	GCAGC	4 cut(s)	538, 985, 988, 1097
BccI	CCATC	3 cut(s)	464, 595, 710
BciVI	GTATCC	1 cut(s)	617
BcnI	CCSGG	1 cut(s)	889
BcoDI	GTCTC	3 cut(s)	405, 465, 1019
BfaI	CTAG	6 cut(s)	131, 213, 387, 398, 692, 1016
BfmI	CTRYAG	2 cut(s)	63, 1083
BfuI	GTATCC	1 cut(s)	617
BisI	GCNGC	4 cut(s)	552, 999, 1002, 1086
BlsI	GCNGC	4 cut(s)	553, 1000, 1003, 1087
Bme1390I	CCNGG	1 cut(s)	889
Bme18I	GGWCC	1 cut(s)	750
BmeT110I	CYCGRG	1 cut(s)	519
BmgT120I	GGNCC	1 cut(s)	750
BmrFI	CCNGG	1 cut(s)	889
BmrI	ACTGGG	1 cut(s)	315
BmsI	GCATC	5 cut(s)	61, 417, 909, 931, 992
BmuI	ACTGGG	1 cut(s)	315
BoxI	GACNNNNGTC	1 cut(s)	457
BpmI	CTGGAG	2 cut(s)	615, 643
BpuEI	CTTGAG	2 cut(s)	447, 939
BpuMI	CCSGG	1 cut(s)	889
BsaBI	GATNNNNATC	1 cut(s)	605
BsaXI	ACNNNNNCTCC	2 cut(s)	605, 635
Bsc4I	CCNNNNNNNGG	3 cut(s)	87, 763, 972
Bse1I	ACTGG	2 cut(s)	310, 632
Bse21I	CCTNAGG	1 cut(s)	924
Bse3DI	GCAATG	2 cut(s)	951, 978
Bse8I	GATNNNNATC	1 cut(s)	605
BseGI	GGATG	2 cut(s)	76, 919
BseJI	GATNNNNATC	1 cut(s)	605
BseLI	CCNNNNNNNGG	3 cut(s)	87, 763, 972
BseMI	GCAATG	2 cut(s)	951, 978
BseMII	CTCAG	4 cut(s)	379, 570, 938, 1020
BseNI	ACTGG	2 cut(s)	310, 632
BseRI	GAGGAG	1 cut(s)	276
BseSI	GKGCMC	1 cut(s)	160
BseXI	GCAGC	4 cut(s)	538, 985, 988, 1097
BsgI	GTGCAG	2 cut(s)	124, 996
BshFI	GGCC	1 cut(s)	231
BsiHKAI	GWGCWC	1 cut(s)	735
BsiHKCI	CYCGRG	1 cut(s)	519
BsiSI	CCGG	2 cut(s)	889, 1089
BslFI	GGGAC	1 cut(s)	263
BslI	CCNNNNNNNGG	3 cut(s)	87, 763, 972
BsmAI	GTCTC	3 cut(s)	405, 465, 1019
BsmFI	GGGAC	1 cut(s)	263
BsnI	GGCC	1 cut(s)	231
BsoBI	CYCGRG	1 cut(s)	519
Bsp1286I	GDGCHC	2 cut(s)	160, 735
Bsp143I	GATC	2 cut(s)	358, 687
BspACI	CCGC	2 cut(s)	611, 825
BspANI	GGCC	1 cut(s)	231
BspCNI	CTCAG	4 cut(s)	378, 571, 937, 1021
BspHI	TCATGA	1 cut(s)	166
BspMAI	CTGCAG	2 cut(s)	67, 1087
BspPI	GGATC	1 cut(s)	682
BsrDI	GCAATG	2 cut(s)	951, 978
BsrI	ACTGG	2 cut(s)	310, 632
BssMI	GATC	2 cut(s)	358, 687
Bst4CI	ACNGT	1 cut(s)	846
Bst6I	CTCTTC	2 cut(s)	251, 570
BstAPI	GCANNNNNTGC	1 cut(s)	71
BstC8I	GCNNGC	3 cut(s)	156, 655, 951
BstDEI	CTNAG	6 cut(s)	9, 299, 365, 579, 924, 1029
BstF5I	GGATG	2 cut(s)	76, 919
BstHHI	GCGC	2 cut(s)	1006, 1036
BstKTI	GATC	2 cut(s)	361, 690
BstMAI	GTCTC	3 cut(s)	405, 465, 1019
BstMBI	GATC	2 cut(s)	358, 687
BstMWI	GCNNNNNNNGC	5 cut(s)	20, 71, 950, 1010, 1040
BstPAI	GACNNNNGTC	1 cut(s)	457
BstSCI	CCNGG	1 cut(s)	887
BstSFI	CTRYAG	2 cut(s)	63, 1083
BstSLI	GKGCMC	1 cut(s)	160
BstV1I	GCAGC	4 cut(s)	538, 985, 988, 1097
BstX2I	RGATCY	1 cut(s)	687
BstYI	RGATCY	1 cut(s)	687
Bsu36I	CCTNAGG	1 cut(s)	924
BsuI	GTATCC	1 cut(s)	617
BsuRI	GGCC	1 cut(s)	231
BtsCI	GGATG	2 cut(s)	76, 919
BtsI	GCAGTG	2 cut(s)	60, 1080
BtsIMutI	CAGTG	5 cut(s)	23, 60, 373, 1043, 1080
Cac8I	GCNNGC	3 cut(s)	156, 655, 951
CaiI	CAGNNNCTG	1 cut(s)	430
CciI	TCATGA	1 cut(s)	166
CfoI	GCGC	2 cut(s)	1006, 1036
Cfr13I	GGNCC	1 cut(s)	750
Csp6I	GTAC	5 cut(s)	36, 267, 474, 485, 1056
CspCI	CAANNNNNGTGG	2 cut(s)	865, 900
CviAII	CATG	7 cut(s)	82, 167, 392, 593, 683, 865, 910
CviQI	GTAC	5 cut(s)	36, 267, 474, 485, 1056
DdeI	CTNAG	6 cut(s)	9, 299, 365, 579, 924, 1029
DpnI	GATC	2 cut(s)	360, 689
DpnII	GATC	2 cut(s)	358, 687
DraIII	CACNNNGTG	1 cut(s)	647
Eam1104I	CTCTTC	2 cut(s)	251, 570
EarI	CTCTTC	2 cut(s)	251, 570
Ecl136II	GAGCTC	1 cut(s)	733
Eco24I	GRGCYC	1 cut(s)	735
Eco47I	GGWCC	1 cut(s)	750
Eco53kI	GAGCTC	1 cut(s)	733
Eco57I	CTGAAG	5 cut(s)	47, 407, 551, 977, 1067
Eco81I	CCTNAGG	1 cut(s)	924
Eco88I	CYCGRG	1 cut(s)	519
EcoICRI	GAGCTC	1 cut(s)	733
EcoT38I	GRGCYC	1 cut(s)	735
FaeI	CATG	7 cut(s)	85, 170, 395, 596, 686, 868, 913
FaqI	GGGAC	1 cut(s)	263
FatI	CATG	7 cut(s)	81, 166, 391, 592, 682, 864, 909
FauI	CCCGC	1 cut(s)	618
Fnu4HI	GCNGC	4 cut(s)	552, 999, 1002, 1086
FokI	GGATG	2 cut(s)	83, 926
FriOI	GRGCYC	1 cut(s)	735
Fsp4HI	GCNGC	4 cut(s)	552, 999, 1002, 1086
FspBI	CTAG	6 cut(s)	131, 213, 387, 398, 692, 1016
GlaI	GCGC	2 cut(s)	1005, 1035
GluI	GCNGC	4 cut(s)	552, 999, 1002, 1086
GsuI	CTGGAG	2 cut(s)	615, 643
HaeIII	GGCC	1 cut(s)	231
HapII	CCGG	2 cut(s)	889, 1089
HhaI	GCGC	2 cut(s)	1006, 1036
Hin1II	CATG	7 cut(s)	85, 170, 395, 596, 686, 868, 913
Hin6I	GCGC	2 cut(s)	1004, 1034
HinP1I	GCGC	2 cut(s)	1004, 1034
HinfI	GANTC	4 cut(s)	437, 583, 776, 794
HpaII	CCGG	2 cut(s)	889, 1089
HphI	GGTGA	2 cut(s)	630, 659
Hpy166II	GTNNAC	2 cut(s)	506, 750
Hpy188I	TCNGA	3 cut(s)	426, 514, 570
Hpy188III	TCNNGA	8 cut(s)	167, 290, 398, 410, 464, 498, 660, 926
Hpy8I	GTNNAC	2 cut(s)	506, 750
HpyAV	CCTTC	7 cut(s)	22, 443, 597, 657, 805, 1042, 1046
HpyCH4III	ACNGT	1 cut(s)	846
HpyF10VI	GCNNNNNNNGC	5 cut(s)	20, 71, 950, 1010, 1040
HpyF3I	CTNAG	6 cut(s)	9, 299, 365, 579, 924, 1029
Hsp92II	CATG	7 cut(s)	85, 170, 395, 596, 686, 868, 913
HspAI	GCGC	2 cut(s)	1004, 1034
Kzo9I	GATC	2 cut(s)	358, 687
LmnI	GCTCC	1 cut(s)	662
Lsp1109I	GCAGC	4 cut(s)	538, 985, 988, 1097
LweI	GCATC	5 cut(s)	61, 417, 909, 931, 992
MaeI	CTAG	6 cut(s)	131, 213, 387, 398, 692, 1016
MaeIII	GTNAC	1 cut(s)	313
MalI	GATC	2 cut(s)	360, 689
MboI	GATC	2 cut(s)	358, 687
MboII	GAAGA	5 cut(s)	268, 353, 413, 557, 983
MflI	RGATCY	1 cut(s)	687
MhlI	GDGCHC	2 cut(s)	160, 735
MluCI	AATT	3 cut(s)	479, 879, 960
MmeI	TCCRAC	1 cut(s)	838
MnlI	CCTC	6 cut(s)	4, 25, 96, 297, 933, 1024
MseI	TTAA	2 cut(s)	174, 804
MspA1I	CMGCKG	1 cut(s)	457
MspI	CCGG	2 cut(s)	889, 1089
MspR9I	CCNGG	1 cut(s)	889
MwoI	GCNNNNNNNGC	5 cut(s)	20, 71, 950, 1010, 1040
NciI	CCSGG	1 cut(s)	889
NdeII	GATC	2 cut(s)	358, 687
NlaIII	CATG	7 cut(s)	85, 170, 395, 596, 686, 868, 913
NmuCI	GTSAC	1 cut(s)	313
PagI	TCATGA	1 cut(s)	166
PfeI	GAWTC	4 cut(s)	437, 583, 776, 794
PflMI	CCANNNNNTGG	1 cut(s)	87
PkrI	GCNGC	4 cut(s)	553, 1000, 1003, 1087
PshAI	GACNNNNGTC	1 cut(s)	457
Psp124BI	GAGCTC	1 cut(s)	735
PspPI	GGNCC	1 cut(s)	750
PstI	CTGCAG	2 cut(s)	67, 1087
PstNI	CAGNNNCTG	1 cut(s)	430
PsuI	RGATCY	1 cut(s)	687
PvuII	CAGCTG	1 cut(s)	457
RsaI	GTAC	5 cut(s)	37, 268, 475, 486, 1057
RsaNI	GTAC	5 cut(s)	36, 267, 474, 485, 1056
SacI	GAGCTC	1 cut(s)	735
SaqAI	TTAA	2 cut(s)	174, 804
SatI	GCNGC	4 cut(s)	552, 999, 1002, 1086
Sau3AI	GATC	2 cut(s)	358, 687
Sau96I	GGNCC	1 cut(s)	750
ScrFI	CCNGG	1 cut(s)	889
SduI	GDGCHC	2 cut(s)	160, 735
SetI	ASST	9 cut(s)	174, 227, 341, 405, 459, 735, 934, 955, 1057
SfaNI	GCATC	5 cut(s)	61, 417, 909, 931, 992
SfcI	CTRYAG	2 cut(s)	63, 1083
SinI	GGWCC	1 cut(s)	750
SmlI	CTYRAG	2 cut(s)	462, 954
SmoI	CTYRAG	2 cut(s)	462, 954
Sse9I	AATT	3 cut(s)	479, 879, 960
SsiI	CCGC	2 cut(s)	611, 825
SspMI	CTAG	6 cut(s)	131, 213, 387, 398, 692, 1016
SstI	GAGCTC	1 cut(s)	735
StyD4I	CCNGG	1 cut(s)	887
TaaI	ACNGT	1 cut(s)	846
TaqI	TCGA	2 cut(s)	409, 831
TaqII	GACCGA	1 cut(s)	767
TasI	AATT	3 cut(s)	479, 879, 960
TatI	WGTACW	1 cut(s)	266
TfiI	GAWTC	4 cut(s)	437, 583, 776, 794
Tru1I	TTAA	2 cut(s)	174, 804
Tru9I	TTAA	2 cut(s)	174, 804
TscAI	CASTG	5 cut(s)	30, 67, 373, 1050, 1087
TseFI	GTSAC	1 cut(s)	313
TseI	GCWGC	4 cut(s)	551, 998, 1001, 1085
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	3 cut(s)	98, 251, 838
TspRI	CASTG	5 cut(s)	30, 67, 373, 1050, 1087
Van91I	CCANNNNNTGG	1 cut(s)	87
VpaK11BI	GGWCC	1 cut(s)	750
XbaI	TCTAGA	1 cut(s)	397
XspI	CTAG	6 cut(s)	131, 213, 387, 398, 692, 1016

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.