MD01G1056600.v1.1

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Forward (+)
16168146 .. 16172978
4833 bp
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UTR
Exon/CDS
Intron
MD01G1056600.v1.1.491

Sequence Viewer

Length: 1473 bp
ATGGGGGGTCAATGCTTCAAATTCATACCATGTTGCTGGAATTCACAAATGAAGGCAGCGGTTCTCGAAACTCCTGACATTGATAATGAGGAGAAGAGCGAGGTTGATAACTTACCTGCATTTCGTGAATTCACATTTGAGCAACTTAAAAAGGCAACATCTGGTTTTGCCGTGGAGTATATTGTGTCTGAGCAAGGAGAGAAGGCTCCAAATATTGTTTATAAAGGGAAACTTGAAAATCAGAAGAGAATTGCTGTTAAGCGCTTCAATAGGATGGCCTGGCCCGATGCTCAGCAATTTTTGGAGGAAGCAAGATTGGTTGGTCACCTCCGCAACCATAGATTGGTCAATTTGCTTGGTTGTTGTTGCGAAGGTGATGAAAGGTTGCTTGTGGCGGAATATATGCCCAATGAAACACTTGCAAAGCATCTTTTTCATTGGGATGCACAGCCTATGAAATGGGTAATGCGATTAAGGGTTGTGTTACATCTTGCACAGGCTCTAGAATACTGCACAAGTAAAGGGCGTGCGCTTTATCACGACCTTAATGCTTACAGAATTTTATTCGATGAGGATGGCAATCCTAGAATATCCACCTTCGGACTGATGAAAAATAGTAGGGATGGGAAGAGTTATAGTACAAATCTGGCATTTACTCCACCTGAATATATTAGGAATGGGAGAGTAACACCAGAAAGTGCAATATATAGCTTTGGGACTCTCTTGATTGATCTTCTCAGCGGAAAGCATATCCCCCCTAGCCATGCCCTAGACCTGATTCGGGACAGAAATCTTCAGATGCTGACAGATTCTTGCTTGGAAGTACAGCTTTCTAATGATGATGGTACTGAGTTGGCACGCTTGGCTTCACGATGTTTACAATCTGAACCCCGAGAGCGACCAAATCCAAAGTCATTAGTTGCTTCTTTGACTCCTCTTCAGAAAGAAGATGAGGTTCCTTCTTCTGTTTTGATGGGTATCCCACACGGTACCTCCGGGTCTTCTCTTTCACCGCTTGGCGAAGCCTGCACAAGAAGGGATTTGACTGCTATACATGAGATCCTAGAGAGTATCGGCTATAAAGATGATGGAATGACAAATGAGCTCTCGTTCCAAATGTGGACTGACCAAATGCAGGAATCATTAGATTCAAAGAAAAAGGGGGATTCTGCTTTTAAGCACAAGGACTTCAGAACCACGATTGAGTGTTATTCACAGTTCATTGATGTTGGAACGATGGTTTCTCCAACAATTTTTGCCCGGCGTAGTTTGTCTTATCTCATGAGTGACAAGCCTCAGAATGCTATAAACGATGCAATGCAAGCACAAGTAGTTTCCCCAGTTTGGCACATTGCATGTTATCTTCAGGCTGTTGCCCTTTCAGCCCTTGGAATGGACAGTGAAGCTCAAGCAGCACTTAAGGAGGGTACTACGCTTGAATCCAAAAGGAGTAAAGCAGTTGGACAAAAGTGA

Protein Analysis

491

Amino Acids

55.09

Weight (kDa)

6.11

Isoelectric Point (pI)

46.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 73 - 310 7e-30 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 73 - 308 3.7e-26 Protein kinase domain
TPR_BSK1_C PF25575 341 - 457 2.3e-61 Serine/threonine-protein kinase BSK1-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 222
Acc36I ACCTGC 1 cut(s) 124
Acc65I GGTACC 1 cut(s) 989
AccB1I GGYRCC 1 cut(s) 989
AccB7I CCANNNNNTGG 1 cut(s) 343
AciI CCGC 5 cut(s) 59, 331, 395, 741, 1013
AclWI GGATC 1 cut(s) 1054
AcsI RAATTY 4 cut(s) 20, 40, 128, 558
AcuI CTGAAG 4 cut(s) 779, 923, 1174, 1349
AfaI GTAC 5 cut(s) 640, 825, 847, 991, 1429
AfeI AGCGCT 1 cut(s) 263
AfiI CCNNNNNNNGG 5 cut(s) 343, 781, 1135, 1344, 1393
AflII CTTAAG 1 cut(s) 1418
AgsI TTSAA 5 cut(s) 19, 236, 268, 1152, 1439
AjnI CCWGG 1 cut(s) 278
AluBI AGCT 4 cut(s) 711, 829, 1105, 1406
AluI AGCT 4 cut(s) 711, 829, 1105, 1406
Alw21I GWGCWC 1 cut(s) 1107
AlwI GGATC 1 cut(s) 1054
AlwNI CAGNNNCTG 1 cut(s) 802
Ama87I CYCGRG 1 cut(s) 891
Aor51HI AGCGCT 1 cut(s) 263
AoxI GGCC 2 cut(s) 276, 281
ApeKI GCWGC 2 cut(s) 56, 1412
ApoI RAATTY 4 cut(s) 20, 40, 128, 558
ArsI GACNNNNNNTTYG 2 cut(s) 896, 928
Asp718I GGTACC 1 cut(s) 989
AspLEI GCGC 2 cut(s) 264, 532
AspS9I GGNCC 1 cut(s) 282
AsuC2I CCSGG 2 cut(s) 997, 1261
AsuHPI GGTGA 3 cut(s) 317, 386, 1002
AvaI CYCGRG 1 cut(s) 891
BanI GGYRCC 1 cut(s) 989
BanII GRGCYC 1 cut(s) 1107
BbsI GAAGAC 1 cut(s) 993
Bbv12I GWGCWC 1 cut(s) 1107
BbvI GCAGC 2 cut(s) 68, 1424
BccI CCATC 7 cut(s) 268, 569, 617, 836, 967, 1082, 1231
BceAI ACGGC 1 cut(s) 155
BcgI CGANNNNNNTGC 2 cut(s) 530, 564
BciT130I CCWGG 1 cut(s) 280
BciVI GTATCC 1 cut(s) 989
BcnI CCSGG 2 cut(s) 997, 1261
BfaI CTAG 5 cut(s) 503, 585, 759, 770, 1064
BfoI RGCGCY 1 cut(s) 265
BfrI CTTAAG 1 cut(s) 1418
BfuAI ACCTGC 1 cut(s) 124
BfuI GTATCC 1 cut(s) 989
BisI GCNGC 2 cut(s) 57, 1413
BlpI GCTNAGC 1 cut(s) 291
BlsI GCNGC 2 cut(s) 58, 1414
Bme1390I CCNGG 3 cut(s) 280, 997, 1261
BmeT110I CYCGRG 1 cut(s) 891
BmgT120I GGNCC 1 cut(s) 282
BmiI GGNNCC 3 cut(s) 207, 957, 991
BmrFI CCNGG 3 cut(s) 280, 997, 1261
BmrI ACTGGG 1 cut(s) 1334
BmsI GCATC 5 cut(s) 277, 433, 436, 789, 1303
BmuI ACTGGG 1 cut(s) 1334
BpiI GAAGAC 1 cut(s) 993
Bpu1102I GCTNAGC 1 cut(s) 291
BpuEI CTTGAG 1 cut(s) 1392
BpuMI CCSGG 2 cut(s) 997, 1261
BsaBI GATNNNNATC 2 cut(s) 579, 977
BsaJI CCNNGG 2 cut(s) 171, 1387
BsaXI ACNNNNNCTCC 2 cut(s) 977, 1007
Bsc4I CCNNNNNNNGG 5 cut(s) 343, 781, 1135, 1344, 1393
Bse1I ACTGG 1 cut(s) 1340
Bse3DI GCAATG 2 cut(s) 1323, 1350
Bse8I GATNNNNATC 2 cut(s) 579, 977
BseBI CCWGG 1 cut(s) 280
BseDI CCNNGG 2 cut(s) 171, 1387
BseGI GGATG 4 cut(s) 279, 448, 580, 628
BseJI GATNNNNATC 2 cut(s) 579, 977
BseLI CCNNNNNNNGG 5 cut(s) 343, 781, 1135, 1344, 1393
BseMI GCAATG 2 cut(s) 1323, 1350
BseMII CTCAG 5 cut(s) 180, 305, 751, 840, 1310
BseNI ACTGG 1 cut(s) 1340
BseRI GAGGAG 2 cut(s) 104, 924
BseXI GCAGC 2 cut(s) 68, 1424
BsgI GTGCAG 2 cut(s) 496, 1012
BshFI GGCC 2 cut(s) 278, 283
BshNI GGYRCC 1 cut(s) 989
BsiHKAI GWGCWC 1 cut(s) 1107
BsiHKCI CYCGRG 1 cut(s) 891
BsiSI CCGG 2 cut(s) 996, 1261
BslFI GGGAC 2 cut(s) 730, 797
BslI CCNNNNNNNGG 5 cut(s) 343, 781, 1135, 1344, 1393
BsmFI GGGAC 2 cut(s) 730, 797
BsmI GAATGC 1 cut(s) 1306
BsnI GGCC 2 cut(s) 278, 283
BsoBI CYCGRG 1 cut(s) 891
Bsp1286I GDGCHC 1 cut(s) 1107
Bsp143I GATC 2 cut(s) 730, 1059
Bsp1720I GCTNAGC 1 cut(s) 291
BspACI CCGC 5 cut(s) 59, 331, 395, 741, 1013
BspANI GGCC 2 cut(s) 278, 283
BspCNI CTCAG 5 cut(s) 181, 304, 750, 841, 1309
BspHI TCATGA 1 cut(s) 1281
BspLI GGNNCC 3 cut(s) 207, 957, 991
BspMI ACCTGC 1 cut(s) 124
BspPI GGATC 1 cut(s) 1054
BspQI GCTCTTC 1 cut(s) 89
BspT107I GGYRCC 1 cut(s) 989
BspTI CTTAAG 1 cut(s) 1418
BsrDI GCAATG 2 cut(s) 1323, 1350
BsrI ACTGG 1 cut(s) 1340
BssECI CCNNGG 2 cut(s) 171, 1387
BssMI GATC 2 cut(s) 730, 1059
BssT1I CCWWGG 1 cut(s) 1387
Bst2UI CCWGG 1 cut(s) 280
Bst4CI ACNGT 3 cut(s) 989, 1218, 1400
Bst6I CTCTTC 4 cut(s) 89, 239, 623, 942
BstAFI CTTAAG 1 cut(s) 1418
BstC8I GCNNGC 4 cut(s) 528, 859, 1027, 1323
BstDEI CTNAG 5 cut(s) 189, 291, 737, 849, 1296
BstDSI CCRYGG 1 cut(s) 171
BstEII GGTNACC 1 cut(s) 323
BstF5I GGATG 4 cut(s) 279, 448, 580, 628
BstH2I RGCGCY 1 cut(s) 265
BstHHI GCGC 2 cut(s) 264, 532
BstKTI GATC 2 cut(s) 733, 1062
BstMBI GATC 2 cut(s) 730, 1059
BstMWI GCNNNNNNNGC 5 cut(s) 863, 1026, 1322, 1382, 1412
BstNI CCWGG 1 cut(s) 280
BstNSI RCATGY 1 cut(s) 1359
BstPI GGTNACC 1 cut(s) 323
BstSCI CCNGG 3 cut(s) 278, 995, 1259
BstV1I GCAGC 2 cut(s) 68, 1424
BstV2I GAAGAC 1 cut(s) 993
BstX2I RGATCY 1 cut(s) 1059
BstXI CCANNNNNNTGG 1 cut(s) 36
BstYI RGATCY 1 cut(s) 1059
BsuI GTATCC 1 cut(s) 989
BsuRI GGCC 2 cut(s) 278, 283
BtgI CCRYGG 1 cut(s) 171
BtsCI GGATG 4 cut(s) 279, 448, 580, 628
BtsIMutI CAGTG 1 cut(s) 1405
BveI ACCTGC 1 cut(s) 124
Cac8I GCNNGC 4 cut(s) 528, 859, 1027, 1323
CaiI CAGNNNCTG 1 cut(s) 802
CciI TCATGA 1 cut(s) 1281
CfoI GCGC 2 cut(s) 264, 532
Cfr13I GGNCC 1 cut(s) 282
Csp6I GTAC 5 cut(s) 639, 824, 846, 990, 1428
CviAII CATG 5 cut(s) 30, 764, 1055, 1282, 1356
CviQI GTAC 5 cut(s) 639, 824, 846, 990, 1428
DdeI CTNAG 5 cut(s) 189, 291, 737, 849, 1296
DpnI GATC 2 cut(s) 732, 1061
DpnII GATC 2 cut(s) 730, 1059
Eam1104I CTCTTC 4 cut(s) 89, 239, 623, 942
EarI CTCTTC 4 cut(s) 89, 239, 623, 942
EciI GGCGGA 1 cut(s) 410
Ecl136II GAGCTC 1 cut(s) 1105
Eco130I CCWWGG 1 cut(s) 1387
Eco24I GRGCYC 1 cut(s) 1107
Eco47III AGCGCT 1 cut(s) 263
Eco53kI GAGCTC 1 cut(s) 1105
Eco57I CTGAAG 4 cut(s) 779, 923, 1174, 1349
Eco88I CYCGRG 1 cut(s) 891
Eco91I GGTNACC 1 cut(s) 323
EcoICRI GAGCTC 1 cut(s) 1105
EcoO65I GGTNACC 1 cut(s) 323
EcoRI GAATTC 2 cut(s) 40, 128
EcoRII CCWGG 1 cut(s) 278
EcoT14I CCWWGG 1 cut(s) 1387
EcoT38I GRGCYC 1 cut(s) 1107
ErhI CCWWGG 1 cut(s) 1387
FaeI CATG 5 cut(s) 33, 767, 1058, 1285, 1359
FalI AAGNNNNNCTT 6 cut(s) 216, 248, 813, 845, 1401, 1433
FaqI GGGAC 2 cut(s) 730, 797
FatI CATG 5 cut(s) 29, 763, 1054, 1281, 1355
Fnu4HI GCNGC 2 cut(s) 57, 1413
FokI GGATG 4 cut(s) 286, 455, 587, 635
FriOI GRGCYC 1 cut(s) 1107
Fsp4HI GCNGC 2 cut(s) 57, 1413
FspBI CTAG 5 cut(s) 503, 585, 759, 770, 1064
GlaI GCGC 2 cut(s) 263, 531
GluI GCNGC 2 cut(s) 57, 1413
HaeII RGCGCY 1 cut(s) 265
HaeIII GGCC 2 cut(s) 278, 283
HapII CCGG 2 cut(s) 996, 1261
HhaI GCGC 2 cut(s) 264, 532
Hin1II CATG 5 cut(s) 33, 767, 1058, 1285, 1359
Hin6I GCGC 2 cut(s) 262, 530
HinP1I GCGC 2 cut(s) 262, 530
HinfI GANTC 8 cut(s) 718, 778, 809, 931, 1139, 1148, 1166, 1439
HpaII CCGG 2 cut(s) 996, 1261
HphI GGTGA 3 cut(s) 317, 386, 1002
Hpy166II GTNNAC 2 cut(s) 878, 1122
Hpy188I TCNGA 8 cut(s) 190, 243, 602, 798, 886, 942, 1193, 1299
Hpy188III TCNNGA 9 cut(s) 65, 74, 125, 503, 539, 724, 782, 870, 1282
Hpy8I GTNNAC 2 cut(s) 878, 1122
HpyAV CCTTC 6 cut(s) 46, 196, 365, 607, 969, 1029
HpyCH4III ACNGT 3 cut(s) 989, 1218, 1400
HpyF10VI GCNNNNNNNGC 5 cut(s) 863, 1026, 1322, 1382, 1412
HpyF3I CTNAG 5 cut(s) 189, 291, 737, 849, 1296
Hsp92II CATG 5 cut(s) 33, 767, 1058, 1285, 1359
HspAI GCGC 2 cut(s) 262, 530
KpnI GGTACC 1 cut(s) 993
Kzo9I GATC 2 cut(s) 730, 1059
LguI GCTCTTC 1 cut(s) 89
LmnI GCTCC 1 cut(s) 211
Lsp1109I GCAGC 2 cut(s) 68, 1424
LweI GCATC 5 cut(s) 277, 433, 436, 789, 1303
MaeI CTAG 5 cut(s) 503, 585, 759, 770, 1064
MaeIII GTNAC 4 cut(s) 323, 483, 685, 1286
MalI GATC 2 cut(s) 732, 1061
MboI GATC 2 cut(s) 730, 1059
MflI RGATCY 1 cut(s) 1059
MhlI GDGCHC 1 cut(s) 1107
MluCI AATT 8 cut(s) 20, 40, 128, 249, 296, 349, 558, 1251
MlyI GAGTC 2 cut(s) 712, 925
MmeI TCCRAC 3 cut(s) 1210, 1271, 1441
MseI TTAA 6 cut(s) 147, 258, 473, 546, 1176, 1419
MslI CAYNNNNRTG 1 cut(s) 441
MspA1I CMGCKG 2 cut(s) 59, 741
MspCI CTTAAG 1 cut(s) 1418
MspI CCGG 2 cut(s) 996, 1261
MspR9I CCNGG 3 cut(s) 280, 997, 1261
Mva1269I GAATGC 1 cut(s) 1306
MvaI CCWGG 1 cut(s) 280
MwoI GCNNNNNNNGC 5 cut(s) 863, 1026, 1322, 1382, 1412
NciI CCSGG 2 cut(s) 997, 1261
NdeII GATC 2 cut(s) 730, 1059
NlaIII CATG 5 cut(s) 33, 767, 1058, 1285, 1359
NlaIV GGNNCC 3 cut(s) 207, 957, 991
NmuCI GTSAC 2 cut(s) 323, 1286
NspI RCATGY 1 cut(s) 1359
PagI TCATGA 1 cut(s) 1281
PciSI GCTCTTC 1 cut(s) 89
PctI GAATGC 1 cut(s) 1306
PfeI GAWTC 6 cut(s) 778, 809, 1139, 1148, 1166, 1439
PflMI CCANNNNNTGG 1 cut(s) 343
PkrI GCNGC 2 cut(s) 58, 1414
PleI GAGTC 2 cut(s) 712, 925
PpsI GAGTC 2 cut(s) 712, 925
PsiI TTATAA 1 cut(s) 222
Psp124BI GAGCTC 1 cut(s) 1107
Psp6I CCWGG 1 cut(s) 278
PspEI GGTNACC 1 cut(s) 323
PspGI CCWGG 1 cut(s) 278
PspN4I GGNNCC 3 cut(s) 207, 957, 991
PspPI GGNCC 1 cut(s) 282
PstNI CAGNNNCTG 1 cut(s) 802
PsuI RGATCY 1 cut(s) 1059
RsaI GTAC 5 cut(s) 640, 825, 847, 991, 1429
RsaNI GTAC 5 cut(s) 639, 824, 846, 990, 1428
RseI CAYNNNNRTG 1 cut(s) 441
SacI GAGCTC 1 cut(s) 1107
SapI GCTCTTC 1 cut(s) 89
SaqAI TTAA 6 cut(s) 147, 258, 473, 546, 1176, 1419
SatI GCNGC 2 cut(s) 57, 1413
Sau3AI GATC 2 cut(s) 730, 1059
Sau96I GGNCC 1 cut(s) 282
SchI GAGTC 2 cut(s) 712, 925
ScrFI CCNGG 3 cut(s) 280, 997, 1261
SduI GDGCHC 1 cut(s) 1107
SfaNI GCATC 5 cut(s) 277, 433, 436, 789, 1303
SmiMI CAYNNNNRTG 1 cut(s) 441
SmlI CTYRAG 2 cut(s) 1407, 1418
SmoI CTYRAG 2 cut(s) 1407, 1418
Sse9I AATT 8 cut(s) 20, 40, 128, 249, 296, 349, 558, 1251
SsiI CCGC 5 cut(s) 59, 331, 395, 741, 1013
SspI AATATT 1 cut(s) 214
SspMI CTAG 5 cut(s) 503, 585, 759, 770, 1064
SstI GAGCTC 1 cut(s) 1107
StyD4I CCNGG 3 cut(s) 278, 995, 1259
StyI CCWWGG 1 cut(s) 1387
TaaI ACNGT 3 cut(s) 989, 1218, 1400
TaqI TCGA 2 cut(s) 66, 567
TasI AATT 8 cut(s) 20, 40, 128, 249, 296, 349, 558, 1251
TatI WGTACW 2 cut(s) 638, 823
TfiI GAWTC 6 cut(s) 778, 809, 1139, 1148, 1166, 1439
Tru1I TTAA 6 cut(s) 147, 258, 473, 546, 1176, 1419
Tru9I TTAA 6 cut(s) 147, 258, 473, 546, 1176, 1419
TscAI CASTG 1 cut(s) 1405
TseFI GTSAC 2 cut(s) 323, 1286
TseI GCWGC 2 cut(s) 56, 1412
Tsp45I GTSAC 2 cut(s) 323, 1286
TspDTI ATGAA 8 cut(s) 13, 65, 393, 425, 426, 470, 623, 1210
TspRI CASTG 1 cut(s) 1405
Van91I CCANNNNNTGG 1 cut(s) 343
Vha464I CTTAAG 1 cut(s) 1418
XapI RAATTY 4 cut(s) 20, 40, 128, 558
XbaI TCTAGA 1 cut(s) 502
XceI RCATGY 1 cut(s) 1359
XspI CTAG 5 cut(s) 503, 585, 759, 770, 1064
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.