RLG00000028189

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
19877223 .. 19881876
4654 bp
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UTR
Exon/CDS
Intron
RLM00000028189

Sequence Viewer

Length: 1476 bp
ATGGGGAGCCAATGCTCCAAACTCATACCATGCTGTGGGGATTCACAATTCAATGCAGCAGCGGTTCTTGAAGCTCCCGCTATTGAAAATGTGGAGAAGAGCGAGGTCGACTACTTGCCTAGATTTTGTGAATTCACTCTCGAGCAACTTAAGAATGCCACATCTGGTTTTGCAGTGGAGTACATTGTGTCTGAACAGGGAGAAAAGGCTCCAAATGTTGTTTATAAAGGGAAATTGGAAAACCAGATGAGAATTGCTGTTAAGCGCTTCAATAGGGTGGCTTGGCCTGATGCTCGGCAATTTGTGGAAGAGGCAAGATTGGTTGGTCAGCTCCGCAACCATAGATTGGTAAATTTGCTTGGCTGCTGCTGCCAATGTGATGAGAGGTTGCTTGTGGCGGAATATATGCCCAATGACACACTTGCAAAACATCTTTTCCATTGGGATGCACAGCCTATGAAATGGACAATGAGATTGAGGGTTGTTTTACATCTTGCACAAGCCCTAGAATACTGCACAAGCAAGGGGCGTGCCCTTTATCATGACCTTAATGCTTACAGAGTTTTATTTGATGAGAATAGTAATCCTAGAATATCTACCTTTGGCCTGATGAAAAATAGTAGGGACGGGAAGAGTTACAGTACAAATCTGGCATTTACTCCCCCTGAATATCTAAGAACTGGGAGAGTGACACCAGAAAGTGTGATATACAGCTTTGGTACTCTTTTACTTGATCTTCTCAGTGGAAAGCATATTCCCCCTAGTCATGCCCTAGACCTTATTCGAGACAGAAATCTTCAGATGCTGACAGATTCTTGCTTGGAAGGACAGCTGTCTCAAGATGATGGTACTGAATTGGTACGCTTGGCTTCACGATGTTTACAATCTGAACCCCGAGAGCGACCAAATCCTAAGTCATTAGTTGCTGCTTTGACTACTCTTCAGAAAGAAACTGAGATTCCTTCTCATGTTTTGATGGGTATCCCGCACACTAACTCCTGCTCTCCTCTTTCACCACTTGGTGAAGCCTGCTCCAGAAAGGATTTGACTGCAATCCATGAGATCTTAGAGAATATCGGCTATAAAGATGATGGAATGACAAATGAGCTCTCGTTCCAAATGTGGACCGACCAAATGCAGGAAACATTAGATTCAAAGAAAAATGGGGATTCGGCTTTTAAGCAGAAGGACTTTAGAACTGCAATCGAATGTTATTCACAGTTCATTGATGTTGGAAACATGGTTTCTCCCACAATTTTTGCCCGGCGTAGTTTGTCTTATCTCATGGATGAGATGCCTCAGGAGGCCCTAAATGATGCAATGCAAGCTCAAGTAATTTCCCCAATATGGCACATTGCATCTTATCTTCAGGCTGCTGCGCTTTCTGCACTCGGAATGGAGATCGAGGCACAATCAGCACTGAAGGATGGTACTCTGCTTGAAGCCAAAAGGAACACTGCAGGTGGACACAAGTGA

Protein Analysis

492

Amino Acids

55.09

Weight (kDa)

5.81

Isoelectric Point (pI)

44.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 73 - 310 5.3e-29 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 73 - 308 2.5e-23 Protein kinase domain
TPR_BSK1_C PF25575 342 - 458 7.1e-62 Serine/threonine-protein kinase BSK1-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 225
AarI CACCTGC 1 cut(s) 1451
Acc36I ACCTGC 1 cut(s) 1451
AccB7I CCANNNNNTGG 2 cut(s) 35, 346
AccI GTMKAC 1 cut(s) 108
AciI CCGC 5 cut(s) 62, 78, 334, 398, 986
AcsI RAATTY 2 cut(s) 131, 352
AcuI CTGAAG 4 cut(s) 782, 926, 1352, 1442
AdeI CACNNNGTG 1 cut(s) 1022
AfaI GTAC 6 cut(s) 182, 643, 721, 850, 861, 1432
AfeI AGCGCT 1 cut(s) 266
AfiI CCNNNNNNNGG 4 cut(s) 35, 346, 1138, 1347
AflII CTTAAG 1 cut(s) 149
AgsI TTSAA 6 cut(s) 52, 71, 86, 271, 1155, 1442
AluBI AGCT 6 cut(s) 74, 331, 714, 832, 1108, 1328
AluI AGCT 6 cut(s) 74, 331, 714, 832, 1108, 1328
Alw21I GWGCWC 1 cut(s) 1110
Alw26I GTCTC 2 cut(s) 780, 840
AlwNI CAGNNNCTG 1 cut(s) 805
Ama87I CYCGRG 2 cut(s) 140, 894
Aor51HI AGCGCT 1 cut(s) 266
AoxI GGCC 3 cut(s) 284, 604, 1305
ApeKI GCWGC 8 cut(s) 56, 59, 363, 366, 369, 926, 1373, 1376
ApoI RAATTY 2 cut(s) 131, 352
ArsI GACNNNNNNTTYG 2 cut(s) 899, 931
AspLEI GCGC 2 cut(s) 267, 1381
AspS9I GGNCC 2 cut(s) 1125, 1306
AsuC2I CCSGG 1 cut(s) 1264
AsuHPI GGTGA 2 cut(s) 1005, 1034
AvaI CYCGRG 2 cut(s) 140, 894
AvaII GGWCC 1 cut(s) 1125
AxyI CCTNAGG 1 cut(s) 1299
BaeGI GKGCMC 1 cut(s) 535
BanII GRGCYC 1 cut(s) 1110
Bbv12I GWGCWC 1 cut(s) 1110
BbvI GCAGC 8 cut(s) 68, 71, 350, 353, 356, 913, 1360, 1363
BccI CCATC 4 cut(s) 839, 970, 1085, 1421
BciVI GTATCC 1 cut(s) 992
BcnI CCSGG 1 cut(s) 1264
BcoDI GTCTC 2 cut(s) 780, 840
BfaI CTAG 5 cut(s) 120, 506, 588, 762, 773
BfmI CTRYAG 1 cut(s) 1458
BfoI RGCGCY 1 cut(s) 268
BfrI CTTAAG 1 cut(s) 149
BfuAI ACCTGC 1 cut(s) 1451
BfuI GTATCC 1 cut(s) 992
BglII AGATCT 1 cut(s) 1062
BisI GCNGC 8 cut(s) 57, 60, 364, 367, 370, 927, 1374, 1377
BlsI GCNGC 8 cut(s) 58, 61, 365, 368, 371, 928, 1375, 1378
Bme1390I CCNGG 1 cut(s) 1264
Bme18I GGWCC 1 cut(s) 1125
BmeT110I CYCGRG 2 cut(s) 140, 894
BmgT120I GGNCC 2 cut(s) 1125, 1306
BmiI GGNNCC 2 cut(s) 8, 210
BmrFI CCNGG 1 cut(s) 1264
BmrI ACTGGG 1 cut(s) 690
BmsI GCATC 6 cut(s) 280, 436, 792, 1284, 1306, 1367
BmuI ACTGGG 1 cut(s) 690
BoxI GACNNNNGTC 1 cut(s) 832
BpmI CTGGAG 1 cut(s) 1018
BpuEI CTTGAG 2 cut(s) 822, 1314
BpuMI CCSGG 1 cut(s) 1264
BsaBI GATNNNNATC 1 cut(s) 980
BsaXI ACNNNNNCTCC 2 cut(s) 980, 1010
Bsc4I CCNNNNNNNGG 4 cut(s) 35, 346, 1138, 1347
Bse1I ACTGG 1 cut(s) 685
Bse21I CCTNAGG 1 cut(s) 1299
Bse3DI GCAATG 2 cut(s) 1326, 1353
Bse8I GATNNNNATC 1 cut(s) 980
BseGI GGATG 3 cut(s) 451, 1294, 1432
BseJI GATNNNNATC 1 cut(s) 980
BseLI CCNNNNNNNGG 4 cut(s) 35, 346, 1138, 1347
BseMI GCAATG 2 cut(s) 1326, 1353
BseMII CTCAG 3 cut(s) 754, 945, 1313
BseNI ACTGG 1 cut(s) 685
BseRI GAGGAG 1 cut(s) 996
BseSI GKGCMC 1 cut(s) 535
BseXI GCAGC 8 cut(s) 68, 71, 350, 353, 356, 913, 1360, 1363
BsgI GTGCAG 2 cut(s) 499, 1371
BshFI GGCC 3 cut(s) 286, 606, 1307
BsiHKAI GWGCWC 1 cut(s) 1110
BsiHKCI CYCGRG 2 cut(s) 140, 894
BsiSI CCGG 1 cut(s) 1264
BslFI GGGAC 1 cut(s) 638
BslI CCNNNNNNNGG 4 cut(s) 35, 346, 1138, 1347
BsmAI GTCTC 2 cut(s) 780, 840
BsmFI GGGAC 1 cut(s) 638
BsmI GAATGC 1 cut(s) 160
BsnI GGCC 3 cut(s) 286, 606, 1307
BsoBI CYCGRG 2 cut(s) 140, 894
Bsp1286I GDGCHC 2 cut(s) 535, 1110
Bsp143I GATC 3 cut(s) 733, 1062, 1401
BspACI CCGC 5 cut(s) 62, 78, 334, 398, 986
BspANI GGCC 3 cut(s) 286, 606, 1307
BspCNI CTCAG 3 cut(s) 753, 946, 1312
BspHI TCATGA 1 cut(s) 541
BspLI GGNNCC 2 cut(s) 8, 210
BspMAI CTGCAG 1 cut(s) 1462
BspMI ACCTGC 1 cut(s) 1451
BspQI GCTCTTC 1 cut(s) 92
BspTI CTTAAG 1 cut(s) 149
BsrDI GCAATG 2 cut(s) 1326, 1353
BsrI ACTGG 1 cut(s) 685
BssMI GATC 3 cut(s) 733, 1062, 1401
Bst4CI ACNGT 2 cut(s) 641, 1221
Bst6I CTCTTC 4 cut(s) 92, 303, 626, 945
BstAFI CTTAAG 1 cut(s) 149
BstC8I GCNNGC 3 cut(s) 531, 1030, 1326
BstDEI CTNAG 6 cut(s) 674, 740, 912, 954, 1066, 1299
BstF5I GGATG 3 cut(s) 451, 1294, 1432
BstH2I RGCGCY 1 cut(s) 268
BstHHI GCGC 2 cut(s) 267, 1381
BstKTI GATC 3 cut(s) 736, 1065, 1404
BstMAI GTCTC 2 cut(s) 780, 840
BstMBI GATC 3 cut(s) 733, 1062, 1401
BstMWI GCNNNNNNNGC 4 cut(s) 369, 1325, 1385, 1415
BstPAI GACNNNNGTC 1 cut(s) 832
BstSCI CCNGG 1 cut(s) 1262
BstSFI CTRYAG 1 cut(s) 1458
BstSLI GKGCMC 1 cut(s) 535
BstV1I GCAGC 8 cut(s) 68, 71, 350, 353, 356, 913, 1360, 1363
BstX2I RGATCY 1 cut(s) 1062
BstYI RGATCY 1 cut(s) 1062
Bsu36I CCTNAGG 1 cut(s) 1299
BsuI GTATCC 1 cut(s) 992
BsuRI GGCC 3 cut(s) 286, 606, 1307
BtsCI GGATG 3 cut(s) 451, 1294, 1432
BtsI GCAGTG 2 cut(s) 180, 1455
BtsIMutI CAGTG 4 cut(s) 180, 748, 1418, 1455
BveI ACCTGC 1 cut(s) 1451
Cac8I GCNNGC 3 cut(s) 531, 1030, 1326
CaiI CAGNNNCTG 1 cut(s) 805
CciI TCATGA 1 cut(s) 541
CfoI GCGC 2 cut(s) 267, 1381
Cfr13I GGNCC 2 cut(s) 1125, 1306
Csp6I GTAC 6 cut(s) 181, 642, 720, 849, 860, 1431
CspCI CAANNNNNGTGG 2 cut(s) 1240, 1275
CviAII CATG 7 cut(s) 30, 542, 767, 968, 1058, 1240, 1285
CviQI GTAC 6 cut(s) 181, 642, 720, 849, 860, 1431
DdeI CTNAG 6 cut(s) 674, 740, 912, 954, 1066, 1299
DpnI GATC 3 cut(s) 735, 1064, 1403
DpnII GATC 3 cut(s) 733, 1062, 1401
DraIII CACNNNGTG 1 cut(s) 1022
Eam1104I CTCTTC 4 cut(s) 92, 303, 626, 945
EarI CTCTTC 4 cut(s) 92, 303, 626, 945
EciI GGCGGA 1 cut(s) 413
Ecl136II GAGCTC 1 cut(s) 1108
Eco24I GRGCYC 1 cut(s) 1110
Eco47I GGWCC 1 cut(s) 1125
Eco47III AGCGCT 1 cut(s) 266
Eco53kI GAGCTC 1 cut(s) 1108
Eco57I CTGAAG 4 cut(s) 782, 926, 1352, 1442
Eco81I CCTNAGG 1 cut(s) 1299
Eco88I CYCGRG 2 cut(s) 140, 894
EcoICRI GAGCTC 1 cut(s) 1108
EcoO109I RGGNCCY 1 cut(s) 1306
EcoRI GAATTC 1 cut(s) 131
EcoT38I GRGCYC 1 cut(s) 1110
FaeI CATG 7 cut(s) 33, 545, 770, 971, 1061, 1243, 1288
FaqI GGGAC 1 cut(s) 638
FatI CATG 7 cut(s) 29, 541, 766, 967, 1057, 1239, 1284
FauI CCCGC 2 cut(s) 85, 993
FblI GTMKAC 1 cut(s) 108
Fnu4HI GCNGC 8 cut(s) 57, 60, 364, 367, 370, 927, 1374, 1377
FokI GGATG 3 cut(s) 458, 1301, 1439
FriOI GRGCYC 1 cut(s) 1110
Fsp4HI GCNGC 8 cut(s) 57, 60, 364, 367, 370, 927, 1374, 1377
FspBI CTAG 5 cut(s) 120, 506, 588, 762, 773
GlaI GCGC 2 cut(s) 266, 1380
GluI GCNGC 8 cut(s) 57, 60, 364, 367, 370, 927, 1374, 1377
GsuI CTGGAG 1 cut(s) 1018
HaeII RGCGCY 1 cut(s) 268
HaeIII GGCC 3 cut(s) 286, 606, 1307
HapII CCGG 1 cut(s) 1264
HhaI GCGC 2 cut(s) 267, 1381
Hin1II CATG 7 cut(s) 33, 545, 770, 971, 1061, 1243, 1288
Hin6I GCGC 2 cut(s) 265, 1379
HinP1I GCGC 2 cut(s) 265, 1379
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HinfI GANTC 5 cut(s) 41, 812, 958, 1151, 1169
HpaII CCGG 1 cut(s) 1264
HphI GGTGA 2 cut(s) 1005, 1034
Hpy166II GTNNAC 4 cut(s) 109, 881, 1125, 1466
Hpy188I TCNGA 5 cut(s) 193, 801, 889, 945, 1394
Hpy188III TCNNGA 8 cut(s) 68, 140, 542, 785, 839, 873, 1035, 1301
Hpy8I GTNNAC 4 cut(s) 109, 881, 1125, 1466
HpyAV CCTTC 4 cut(s) 818, 972, 1180, 1417
HpyCH4III ACNGT 2 cut(s) 641, 1221
HpyF10VI GCNNNNNNNGC 4 cut(s) 369, 1325, 1385, 1415
HpyF3I CTNAG 6 cut(s) 674, 740, 912, 954, 1066, 1299
Hsp92II CATG 7 cut(s) 33, 545, 770, 971, 1061, 1243, 1288
HspAI GCGC 2 cut(s) 265, 1379
Kzo9I GATC 3 cut(s) 733, 1062, 1401
LguI GCTCTTC 1 cut(s) 92
LmnI GCTCC 6 cut(s) 6, 20, 79, 214, 336, 1037
Lsp1109I GCAGC 8 cut(s) 68, 71, 350, 353, 356, 913, 1360, 1363
LweI GCATC 6 cut(s) 280, 436, 792, 1284, 1306, 1367
MaeI CTAG 5 cut(s) 120, 506, 588, 762, 773
MaeIII GTNAC 2 cut(s) 635, 688
MalI GATC 3 cut(s) 735, 1064, 1403
MboI GATC 3 cut(s) 733, 1062, 1401
MboII GAAGA 7 cut(s) 109, 320, 643, 728, 788, 932, 1358
MflI RGATCY 1 cut(s) 1062
MhlI GDGCHC 2 cut(s) 535, 1110
MluCI AATT 9 cut(s) 47, 131, 233, 252, 299, 352, 854, 1254, 1335
MmeI TCCRAC 1 cut(s) 1213
MnlI CCTC 8 cut(s) 97, 304, 378, 471, 1017, 1297, 1308, 1399
MseI TTAA 4 cut(s) 150, 261, 549, 1179
MslI CAYNNNNRTG 1 cut(s) 444
MspA1I CMGCKG 2 cut(s) 62, 832
MspCI CTTAAG 1 cut(s) 149
MspI CCGG 1 cut(s) 1264
MspR9I CCNGG 1 cut(s) 1264
Mva1269I GAATGC 1 cut(s) 160
MwoI GCNNNNNNNGC 4 cut(s) 369, 1325, 1385, 1415
NciI CCSGG 1 cut(s) 1264
NdeII GATC 3 cut(s) 733, 1062, 1401
NlaIII CATG 7 cut(s) 33, 545, 770, 971, 1061, 1243, 1288
NlaIV GGNNCC 2 cut(s) 8, 210
NmeAIII GCCGAG 1 cut(s) 274
NmuCI GTSAC 1 cut(s) 688
PaeR7I CTCGAG 1 cut(s) 140
PagI TCATGA 1 cut(s) 541
PaqCI CACCTGC 1 cut(s) 1451
PciSI GCTCTTC 1 cut(s) 92
PctI GAATGC 1 cut(s) 160
PfeI GAWTC 5 cut(s) 41, 812, 958, 1151, 1169
PflMI CCANNNNNTGG 2 cut(s) 35, 346
PkrI GCNGC 8 cut(s) 58, 61, 365, 368, 371, 928, 1375, 1378
PshAI GACNNNNGTC 1 cut(s) 832
PsiI TTATAA 1 cut(s) 225
Psp124BI GAGCTC 1 cut(s) 1110
PspN4I GGNNCC 2 cut(s) 8, 210
PspPI GGNCC 2 cut(s) 1125, 1306
PstI CTGCAG 1 cut(s) 1462
PstNI CAGNNNCTG 1 cut(s) 805
PsuI RGATCY 1 cut(s) 1062
PvuII CAGCTG 1 cut(s) 832
RsaI GTAC 6 cut(s) 182, 643, 721, 850, 861, 1432
RsaNI GTAC 6 cut(s) 181, 642, 720, 849, 860, 1431
RseI CAYNNNNRTG 1 cut(s) 444
SacI GAGCTC 1 cut(s) 1110
SalI GTCGAC 1 cut(s) 107
SapI GCTCTTC 1 cut(s) 92
SaqAI TTAA 4 cut(s) 150, 261, 549, 1179
SatI GCNGC 8 cut(s) 57, 60, 364, 367, 370, 927, 1374, 1377
Sau3AI GATC 3 cut(s) 733, 1062, 1401
Sau96I GGNCC 2 cut(s) 1125, 1306
ScrFI CCNGG 1 cut(s) 1264
SduI GDGCHC 2 cut(s) 535, 1110
SfaNI GCATC 6 cut(s) 280, 436, 792, 1284, 1306, 1367
SfcI CTRYAG 1 cut(s) 1458
Sfr274I CTCGAG 1 cut(s) 140
SinI GGWCC 1 cut(s) 1125
SlaI CTCGAG 1 cut(s) 140
SmiMI CAYNNNNRTG 1 cut(s) 444
SmlI CTYRAG 4 cut(s) 140, 149, 837, 1329
SmoI CTYRAG 4 cut(s) 140, 149, 837, 1329
Sse9I AATT 9 cut(s) 47, 131, 233, 252, 299, 352, 854, 1254, 1335
SsiI CCGC 5 cut(s) 62, 78, 334, 398, 986
SspMI CTAG 5 cut(s) 120, 506, 588, 762, 773
SstI GAGCTC 1 cut(s) 1110
StyD4I CCNGG 1 cut(s) 1262
TaaI ACNGT 2 cut(s) 641, 1221
TaqI TCGA 5 cut(s) 108, 141, 784, 1206, 1404
TaqII GACCGA 1 cut(s) 1142
TasI AATT 9 cut(s) 47, 131, 233, 252, 299, 352, 854, 1254, 1335
TatI WGTACW 2 cut(s) 180, 641
TfiI GAWTC 5 cut(s) 41, 812, 958, 1151, 1169
Tru1I TTAA 4 cut(s) 150, 261, 549, 1179
Tru9I TTAA 4 cut(s) 150, 261, 549, 1179
TscAI CASTG 4 cut(s) 180, 748, 1425, 1462
TseFI GTSAC 1 cut(s) 688
TseI GCWGC 8 cut(s) 56, 59, 363, 366, 369, 926, 1373, 1376
Tsp45I GTSAC 1 cut(s) 688
TspDTI ATGAA 3 cut(s) 473, 626, 1213
TspRI CASTG 4 cut(s) 180, 748, 1425, 1462
Van91I CCANNNNNTGG 2 cut(s) 35, 346
Vha464I CTTAAG 1 cut(s) 149
VpaK11BI GGWCC 1 cut(s) 1125
XapI RAATTY 2 cut(s) 131, 352
XhoI CTCGAG 1 cut(s) 140
XmiI GTMKAC 1 cut(s) 108
XspI CTAG 5 cut(s) 120, 506, 588, 762, 773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.