RchiOBHm_Chr1g0354661

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
47526415 .. 47532473
6059 bp
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UTR
Exon/CDS
Intron
PRQ58018

Sequence Viewer

Length: 1476 bp
ATGGGGAGCCAATGCTCCAAACTCATACCATGCTGTGGGGATTCACAATTCAATGCAGCAGCGGTTCTTGAAGCTCCCGCTATTGAAAATGTGGAGAAGAGCGAGGTTGACTACTTGCCTAGATTTTGTGAATTCACGCTTGAGCAGCTTAAAAATGCTACATCTGGTTTTGCAGTGGAGTACATTGTGTCTGAACAGGGAGAGAAGGCTCCAAATGTTGTTTATAAAGGGAAATTGGAAAACCAGATGAGAATTGCTGTTAAGCGCTTCAATAGGGTGGCTTGGCCTGATGCTCGGCAATTTGTGGAAGAGGCAAGATTGGTTGGTCAGCTCCGCAACCATAGATTGGTAAATTTGCTTGGCTGCTGCTGCCAAGGTGATGAGAGGTTGCTTGTGGCGGAATATATGCCCAATGACACACTTGCAAAACACCTTTTCCATTGGGATGCACAGCCTATGAAATGGACAATGAGATTGAGGGTTGTTTTACATCTTGCACAAGCCCTAGAATACTGCACAAGCAAGGGGCGTGCCCTTTATCATGACCTTAATGCTTACAGAGTTTTATTTGATGAGAATAGTAATCCTAGAATATCTACCTTTGGCCTGATGAAAAATAGTAGGGACGGGAAGAGTTATAGTACAAATCTGGCATTTACTCCTCCTGAATATCTTAGAACTGGGAGAGTGACACCAGAAAGTGTGATATACAGCTTTGGAACTCTTTTACTTGATCTTCTCAGTGGAAAGCATATTCCCCCTAGTCATGCCCTAGACCTTATTCGAGACAGAAATCTTCAGATGCTGACAGATTCTTGCTTGGAAGGACAGCTGTCTCAAGATGATGGTACTGAATTGGTACGCTTGGCTTCACGATGTTTACAATCTGAACCCCGAGAGCGACCAAATCCTAAGTCATTAGTTGCTGCTTTGACTACTCTTCAGAAAGAAACTGAGATTCCTTCTCATGTTTTGATGGGTATCCCGCACACTAACTCCTGCTCTCCTCTTTCACCACTTGGTGAAGCCTGCTCCAGAAAGGATTTGACTGCAATCCATGAGATCCTAGAGAATATCGGCTATAAAGATGATGGAATGACAAATGAGCTCTCGTTCCAAATGTGGACGGACCAAATGCAGGAAACATTAGATTCAAAGAAAAATGGGGATTCTGCTTTTAAGCAGAAGGACTTCAGAACTGCAATCGAATGTTATTCACAGTTCATTGATGTTGGAAACATGGTTTCTCCCACCATTTTTGCCCGTCGTAGTTTGTCTTATCTCATGGATGAGATGCCTCAGGAGGCTCTAAATGATGCAATGCAAGCTCAAGTAATTTCCCCAATATGGCACATTGCATCTTATCTTCAGGCTGCTGCGCTTTCTGCACTCGGAATGGAGACTGAGGCACAATCAGCACTGAAGGAGGGTACTCTGCTTGAAGCCAAAAGGAACACTGCAGGTGGACACAAGTGA

Protein Analysis

491

Amino Acids

55.05

Weight (kDa)

5.81

Isoelectric Point (pI)

43.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 73 - 310 1.9e-29 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 73 - 308 1.2e-23 Protein kinase domain
TPR_BSK1_C PF25575 342 - 458 7.1e-62 Serine/threonine-protein kinase BSK1-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 225
AarI CACCTGC 1 cut(s) 1451
Acc36I ACCTGC 1 cut(s) 1451
AccB7I CCANNNNNTGG 2 cut(s) 35, 346
AciI CCGC 5 cut(s) 62, 78, 334, 398, 986
AclWI GGATC 1 cut(s) 1057
AcsI RAATTY 2 cut(s) 131, 352
AcuI CTGAAG 5 cut(s) 782, 926, 1177, 1352, 1442
AdeI CACNNNGTG 1 cut(s) 1022
AfaI GTAC 5 cut(s) 182, 643, 850, 861, 1432
AfeI AGCGCT 1 cut(s) 266
AfiI CCNNNNNNNGG 4 cut(s) 35, 346, 1138, 1347
AgsI TTSAA 6 cut(s) 52, 71, 86, 271, 1155, 1442
AluBI AGCT 7 cut(s) 74, 148, 331, 714, 832, 1108, 1328
AluI AGCT 7 cut(s) 74, 148, 331, 714, 832, 1108, 1328
Alw21I GWGCWC 1 cut(s) 1110
Alw26I GTCTC 3 cut(s) 780, 840, 1394
AlwI GGATC 1 cut(s) 1057
AlwNI CAGNNNCTG 1 cut(s) 805
Ama87I CYCGRG 1 cut(s) 894
Aor51HI AGCGCT 1 cut(s) 266
AoxI GGCC 2 cut(s) 284, 604
ApeKI GCWGC 9 cut(s) 56, 59, 145, 363, 366, 369, 926, 1373, 1376
ApoI RAATTY 2 cut(s) 131, 352
ArsI GACNNNNNNTTYG 2 cut(s) 899, 931
Asp700I GAANNNNTTC 1 cut(s) 1190
AspLEI GCGC 2 cut(s) 267, 1381
AspS9I GGNCC 1 cut(s) 1129
AsuHPI GGTGA 3 cut(s) 389, 1005, 1034
AvaI CYCGRG 1 cut(s) 894
AvaII GGWCC 1 cut(s) 1129
AxyI CCTNAGG 1 cut(s) 1299
BaeGI GKGCMC 1 cut(s) 535
BanII GRGCYC 1 cut(s) 1110
Bbv12I GWGCWC 1 cut(s) 1110
BbvI GCAGC 9 cut(s) 68, 71, 157, 350, 353, 356, 913, 1360, 1363
BccI CCATC 3 cut(s) 839, 970, 1085
BciVI GTATCC 1 cut(s) 992
BcoDI GTCTC 3 cut(s) 780, 840, 1394
BfaI CTAG 6 cut(s) 120, 506, 588, 762, 773, 1067
BfmI CTRYAG 1 cut(s) 1458
BfoI RGCGCY 1 cut(s) 268
BfuAI ACCTGC 1 cut(s) 1451
BfuI GTATCC 1 cut(s) 992
BisI GCNGC 9 cut(s) 57, 60, 146, 364, 367, 370, 927, 1374, 1377
BlsI GCNGC 9 cut(s) 58, 61, 147, 365, 368, 371, 928, 1375, 1378
Bme18I GGWCC 1 cut(s) 1129
BmeT110I CYCGRG 1 cut(s) 894
BmgT120I GGNCC 1 cut(s) 1129
BmiI GGNNCC 2 cut(s) 8, 210
BmrI ACTGGG 1 cut(s) 690
BmsI GCATC 6 cut(s) 280, 436, 792, 1284, 1306, 1367
BmuI ACTGGG 1 cut(s) 690
BoxI GACNNNNGTC 1 cut(s) 832
BpmI CTGGAG 1 cut(s) 1018
BpuEI CTTGAG 3 cut(s) 161, 822, 1314
BsaBI GATNNNNATC 1 cut(s) 980
BsaJI CCNNGG 1 cut(s) 373
BsaXI ACNNNNNCTCC 2 cut(s) 980, 1010
Bsc4I CCNNNNNNNGG 4 cut(s) 35, 346, 1138, 1347
Bse1I ACTGG 1 cut(s) 685
Bse21I CCTNAGG 1 cut(s) 1299
Bse3DI GCAATG 2 cut(s) 1326, 1353
Bse8I GATNNNNATC 1 cut(s) 980
BseDI CCNNGG 1 cut(s) 373
BseGI GGATG 2 cut(s) 451, 1294
BseJI GATNNNNATC 1 cut(s) 980
BseLI CCNNNNNNNGG 4 cut(s) 35, 346, 1138, 1347
BseMI GCAATG 2 cut(s) 1326, 1353
BseMII CTCAG 4 cut(s) 754, 945, 1313, 1395
BseNI ACTGG 1 cut(s) 685
BseRI GAGGAG 2 cut(s) 651, 996
BseSI GKGCMC 1 cut(s) 535
BseXI GCAGC 9 cut(s) 68, 71, 157, 350, 353, 356, 913, 1360, 1363
BsgI GTGCAG 2 cut(s) 499, 1371
BshFI GGCC 2 cut(s) 286, 606
BsiHKAI GWGCWC 1 cut(s) 1110
BsiHKCI CYCGRG 1 cut(s) 894
BslFI GGGAC 1 cut(s) 638
BslI CCNNNNNNNGG 4 cut(s) 35, 346, 1138, 1347
BsmAI GTCTC 3 cut(s) 780, 840, 1394
BsmFI GGGAC 1 cut(s) 638
BsnI GGCC 2 cut(s) 286, 606
BsoBI CYCGRG 1 cut(s) 894
Bsp1286I GDGCHC 2 cut(s) 535, 1110
Bsp143I GATC 2 cut(s) 733, 1062
BspACI CCGC 5 cut(s) 62, 78, 334, 398, 986
BspANI GGCC 2 cut(s) 286, 606
BspCNI CTCAG 4 cut(s) 753, 946, 1312, 1396
BspHI TCATGA 1 cut(s) 541
BspLI GGNNCC 2 cut(s) 8, 210
BspMAI CTGCAG 1 cut(s) 1462
BspMI ACCTGC 1 cut(s) 1451
BspPI GGATC 1 cut(s) 1057
BspQI GCTCTTC 1 cut(s) 92
BsrDI GCAATG 2 cut(s) 1326, 1353
BsrI ACTGG 1 cut(s) 685
BssECI CCNNGG 1 cut(s) 373
BssMI GATC 2 cut(s) 733, 1062
BssT1I CCWWGG 1 cut(s) 373
Bst4CI ACNGT 1 cut(s) 1221
Bst6I CTCTTC 4 cut(s) 92, 303, 626, 945
BstC8I GCNNGC 3 cut(s) 531, 1030, 1326
BstDEI CTNAG 6 cut(s) 674, 740, 912, 954, 1299, 1404
BstF5I GGATG 2 cut(s) 451, 1294
BstH2I RGCGCY 1 cut(s) 268
BstHHI GCGC 2 cut(s) 267, 1381
BstKTI GATC 2 cut(s) 736, 1065
BstMAI GTCTC 3 cut(s) 780, 840, 1394
BstMBI GATC 2 cut(s) 733, 1062
BstMWI GCNNNNNNNGC 5 cut(s) 145, 369, 1325, 1385, 1415
BstPAI GACNNNNGTC 1 cut(s) 832
BstSFI CTRYAG 1 cut(s) 1458
BstSLI GKGCMC 1 cut(s) 535
BstV1I GCAGC 9 cut(s) 68, 71, 157, 350, 353, 356, 913, 1360, 1363
BstX2I RGATCY 1 cut(s) 1062
BstYI RGATCY 1 cut(s) 1062
Bsu36I CCTNAGG 1 cut(s) 1299
BsuI GTATCC 1 cut(s) 992
BsuRI GGCC 2 cut(s) 286, 606
BtsCI GGATG 2 cut(s) 451, 1294
BtsI GCAGTG 2 cut(s) 180, 1455
BtsIMutI CAGTG 4 cut(s) 180, 748, 1418, 1455
BveI ACCTGC 1 cut(s) 1451
Cac8I GCNNGC 3 cut(s) 531, 1030, 1326
CaiI CAGNNNCTG 1 cut(s) 805
CciI TCATGA 1 cut(s) 541
CfoI GCGC 2 cut(s) 267, 1381
Cfr13I GGNCC 1 cut(s) 1129
Csp6I GTAC 5 cut(s) 181, 642, 849, 860, 1431
CspCI CAANNNNNGTGG 2 cut(s) 1240, 1275
CviAII CATG 7 cut(s) 30, 542, 767, 968, 1058, 1240, 1285
CviQI GTAC 5 cut(s) 181, 642, 849, 860, 1431
DdeI CTNAG 6 cut(s) 674, 740, 912, 954, 1299, 1404
DpnI GATC 2 cut(s) 735, 1064
DpnII GATC 2 cut(s) 733, 1062
DraIII CACNNNGTG 1 cut(s) 1022
Eam1104I CTCTTC 4 cut(s) 92, 303, 626, 945
EarI CTCTTC 4 cut(s) 92, 303, 626, 945
EciI GGCGGA 1 cut(s) 413
Ecl136II GAGCTC 1 cut(s) 1108
Eco130I CCWWGG 1 cut(s) 373
Eco24I GRGCYC 1 cut(s) 1110
Eco47I GGWCC 1 cut(s) 1129
Eco47III AGCGCT 1 cut(s) 266
Eco53kI GAGCTC 1 cut(s) 1108
Eco57I CTGAAG 5 cut(s) 782, 926, 1177, 1352, 1442
Eco81I CCTNAGG 1 cut(s) 1299
Eco88I CYCGRG 1 cut(s) 894
EcoICRI GAGCTC 1 cut(s) 1108
EcoRI GAATTC 1 cut(s) 131
EcoT14I CCWWGG 1 cut(s) 373
EcoT38I GRGCYC 1 cut(s) 1110
ErhI CCWWGG 1 cut(s) 373
FaeI CATG 7 cut(s) 33, 545, 770, 971, 1061, 1243, 1288
FaqI GGGAC 1 cut(s) 638
FatI CATG 7 cut(s) 29, 541, 766, 967, 1057, 1239, 1284
FauI CCCGC 2 cut(s) 85, 993
Fnu4HI GCNGC 9 cut(s) 57, 60, 146, 364, 367, 370, 927, 1374, 1377
FokI GGATG 2 cut(s) 458, 1301
FriOI GRGCYC 1 cut(s) 1110
Fsp4HI GCNGC 9 cut(s) 57, 60, 146, 364, 367, 370, 927, 1374, 1377
FspBI CTAG 6 cut(s) 120, 506, 588, 762, 773, 1067
GlaI GCGC 2 cut(s) 266, 1380
GluI GCNGC 9 cut(s) 57, 60, 146, 364, 367, 370, 927, 1374, 1377
GsuI CTGGAG 1 cut(s) 1018
HaeII RGCGCY 1 cut(s) 268
HaeIII GGCC 2 cut(s) 286, 606
HhaI GCGC 2 cut(s) 267, 1381
Hin1II CATG 7 cut(s) 33, 545, 770, 971, 1061, 1243, 1288
Hin6I GCGC 2 cut(s) 265, 1379
HinP1I GCGC 2 cut(s) 265, 1379
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HinfI GANTC 5 cut(s) 41, 812, 958, 1151, 1169
HphI GGTGA 3 cut(s) 389, 1005, 1034
Hpy166II GTNNAC 4 cut(s) 109, 881, 1125, 1466
Hpy188I TCNGA 6 cut(s) 193, 801, 889, 945, 1196, 1394
Hpy188III TCNNGA 8 cut(s) 68, 542, 665, 785, 839, 873, 1035, 1301
Hpy8I GTNNAC 4 cut(s) 109, 881, 1125, 1466
Hpy99I CGWCG 1 cut(s) 1269
HpyAV CCTTC 5 cut(s) 199, 818, 972, 1180, 1417
HpyCH4III ACNGT 1 cut(s) 1221
HpyF10VI GCNNNNNNNGC 5 cut(s) 145, 369, 1325, 1385, 1415
HpyF3I CTNAG 6 cut(s) 674, 740, 912, 954, 1299, 1404
Hsp92II CATG 7 cut(s) 33, 545, 770, 971, 1061, 1243, 1288
HspAI GCGC 2 cut(s) 265, 1379
Kzo9I GATC 2 cut(s) 733, 1062
LguI GCTCTTC 1 cut(s) 92
LmnI GCTCC 6 cut(s) 6, 20, 79, 214, 336, 1037
Lsp1109I GCAGC 9 cut(s) 68, 71, 157, 350, 353, 356, 913, 1360, 1363
LweI GCATC 6 cut(s) 280, 436, 792, 1284, 1306, 1367
MaeI CTAG 6 cut(s) 120, 506, 588, 762, 773, 1067
MaeIII GTNAC 1 cut(s) 688
MalI GATC 2 cut(s) 735, 1064
MboI GATC 2 cut(s) 733, 1062
MboII GAAGA 7 cut(s) 109, 320, 643, 728, 788, 932, 1358
MflI RGATCY 1 cut(s) 1062
MhlI GDGCHC 2 cut(s) 535, 1110
MluCI AATT 8 cut(s) 47, 131, 233, 252, 299, 352, 854, 1335
MmeI TCCRAC 1 cut(s) 1213
MroXI GAANNNNTTC 1 cut(s) 1190
MseI TTAA 4 cut(s) 150, 261, 549, 1179
MslI CAYNNNNRTG 1 cut(s) 444
MspA1I CMGCKG 2 cut(s) 62, 832
MwoI GCNNNNNNNGC 5 cut(s) 145, 369, 1325, 1385, 1415
NdeII GATC 2 cut(s) 733, 1062
NlaIII CATG 7 cut(s) 33, 545, 770, 971, 1061, 1243, 1288
NlaIV GGNNCC 2 cut(s) 8, 210
NmeAIII GCCGAG 1 cut(s) 274
NmuCI GTSAC 1 cut(s) 688
PagI TCATGA 1 cut(s) 541
PaqCI CACCTGC 1 cut(s) 1451
PciSI GCTCTTC 1 cut(s) 92
PdmI GAANNNNTTC 1 cut(s) 1190
PfeI GAWTC 5 cut(s) 41, 812, 958, 1151, 1169
PflMI CCANNNNNTGG 2 cut(s) 35, 346
PkrI GCNGC 9 cut(s) 58, 61, 147, 365, 368, 371, 928, 1375, 1378
PshAI GACNNNNGTC 1 cut(s) 832
PsiI TTATAA 1 cut(s) 225
Psp124BI GAGCTC 1 cut(s) 1110
PspN4I GGNNCC 2 cut(s) 8, 210
PspPI GGNCC 1 cut(s) 1129
PstI CTGCAG 1 cut(s) 1462
PstNI CAGNNNCTG 1 cut(s) 805
PsuI RGATCY 1 cut(s) 1062
PvuII CAGCTG 1 cut(s) 832
RsaI GTAC 5 cut(s) 182, 643, 850, 861, 1432
RsaNI GTAC 5 cut(s) 181, 642, 849, 860, 1431
RseI CAYNNNNRTG 1 cut(s) 444
SacI GAGCTC 1 cut(s) 1110
SapI GCTCTTC 1 cut(s) 92
SaqAI TTAA 4 cut(s) 150, 261, 549, 1179
SatI GCNGC 9 cut(s) 57, 60, 146, 364, 367, 370, 927, 1374, 1377
Sau3AI GATC 2 cut(s) 733, 1062
Sau96I GGNCC 1 cut(s) 1129
SduI GDGCHC 2 cut(s) 535, 1110
SfaNI GCATC 6 cut(s) 280, 436, 792, 1284, 1306, 1367
SfcI CTRYAG 1 cut(s) 1458
SinI GGWCC 1 cut(s) 1129
SmiMI CAYNNNNRTG 1 cut(s) 444
SmlI CTYRAG 3 cut(s) 140, 837, 1329
SmoI CTYRAG 3 cut(s) 140, 837, 1329
Sse9I AATT 8 cut(s) 47, 131, 233, 252, 299, 352, 854, 1335
SsiI CCGC 5 cut(s) 62, 78, 334, 398, 986
SspMI CTAG 6 cut(s) 120, 506, 588, 762, 773, 1067
SstI GAGCTC 1 cut(s) 1110
StyI CCWWGG 1 cut(s) 373
TaaI ACNGT 1 cut(s) 1221
TaqI TCGA 2 cut(s) 784, 1206
TasI AATT 8 cut(s) 47, 131, 233, 252, 299, 352, 854, 1335
TatI WGTACW 2 cut(s) 180, 641
TfiI GAWTC 5 cut(s) 41, 812, 958, 1151, 1169
Tru1I TTAA 4 cut(s) 150, 261, 549, 1179
Tru9I TTAA 4 cut(s) 150, 261, 549, 1179
TscAI CASTG 4 cut(s) 180, 748, 1425, 1462
TseFI GTSAC 1 cut(s) 688
TseI GCWGC 9 cut(s) 56, 59, 145, 363, 366, 369, 926, 1373, 1376
Tsp45I GTSAC 1 cut(s) 688
TspDTI ATGAA 3 cut(s) 473, 626, 1213
TspGWI ACGGA 1 cut(s) 1142
TspRI CASTG 4 cut(s) 180, 748, 1425, 1462
Van91I CCANNNNNTGG 2 cut(s) 35, 346
VpaK11BI GGWCC 1 cut(s) 1129
XapI RAATTY 2 cut(s) 131, 352
XmnI GAANNNNTTC 1 cut(s) 1190
XspI CTAG 6 cut(s) 120, 506, 588, 762, 773, 1067
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.