Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0007594

Physical Location & Seq

Genomic Coordinates Forward (+)

9371000 .. 9374991

Gene Structure 3992 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g08460.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1473 bp

ATGGGGGGTCAATGCTTCAAACTCATACCATGTTGCTGGAATTCACAAATGAAGGCAGCGGTTCTCGAAACTCCTGATATTGATAATGAGGAGAAGAGTGAGGTTGATAACTTACCTGCATTTCGTGAATTCACATTTGAGCAACTTAAAAATGCAACATCTGGTTTTGCCGTGGAGTACATTGTGTCTGAGCAAGGAGAGAAGGCTCCAAATATTGTTTATAAAGGGAAACTTGAAAATCAAAAGAGAATTGCTGTTAAGCGCTTCAATAGGTTGGCCTGGCCCGATGCTCAGCAATTTGTGGAGGAAGCAAGATTGGTCGGTCACCTCCGCAACCATAGATTGGTCAATTTGCTTGGTTGTTGTTGTGAAGGTGATGAAAGGTTGCTTGTGGCGGAATATATGCCCAATGAAACACTTGCAAAGCATCTTTTTCATTGGGATACACAGCCTATGAAATGGGTAATGCGATTAAGAGTTGTATTACATCTTGCACAGGCTCTAGAATACTGCACAAGTAAGGGGCGTGCGCTTTATCACGACCTTAATGGTTACAGAATTTTATTTGATGAGGATGGCAATCCTAGACTATCCACCTTTGGACTGATGAAAAATAGTAGGGATGGGAAGAGTTATAGTACAAATCTGGCATTTACTCCTCCTGAATATATTAGGACTGGGAGAGTAACACCAGAAAGTGCAATATATAGCTTTGGGACTCTCTTGATTGATCTTCTCAGCGGAAAGCATATCCCCCCTAGCCATGCCCTAGACCTGATTCGAGACAGAAATGTTCAGATGCTGACAGATTCTTGCTTGGAAGTACAGCTTTCTAATGATGATGGTACTGAGTTGGCACGCTTGGCTTCACGATGTTTACAATCTGAACCCCGAGAGCGACCAAATCCAAAGTCATTAGTTGCTTCTTTGACTCCTCTTCAGAAAGAAACTGAGGTTCCTTCTTCTGTTTTGATGGGTATCCCACACGGTACCTCCTGGTCTTCTCTTTCACCACTCGGCGAAGCCTGCACAAGAAGGGATTTGACTGCTATACATGAGATCCTAGAGAGTATCGGCTATAAAGATGATGGAATGACAAATGAGCTCTCGTTCCAAATGTGGACTGACCAAATGCAGGAATCATTAGATTCAAAGAAAAAGGGGGATTCTGCTTTTAAGCACAAGGACTTCAGAACCACGATTGAGTGTTATTCACAGTTCATTGATGTTGGAACGATGGTTTCTCCAACAATTTTTGCCCGGCGTAGTTTGTCTTATCTCATGAGTGACAAGCCTCAGAAAGCTCTAAACGATGCAATGCAAGCACAAGTAGTCTCCCCAGTTTGGCACATTGCGTGTTATCTTCAGGCTGTTGCCCTTTCGACACTTGGAATGGACATTGAAACTCAAGCAGCACTTAAGGAGGGTACTACGCTTGAATCCAAAAGGAGTAAAGCAGTTGGACAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

491

Amino Acids

55.21

Weight (kDa)

6.22

Isoelectric Point (pI)

44.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01740 AT1G01740 AT4G00710 AT4G00710
fragaria_vesca	FvH4_7g14010 FvH4_7g14010 FvH4_7g14010 FvH4_7g14010 FvH4_7g14010
malus_domestica	MD01G1056600.v1.1
prunus_persica	Prupe.2G167300_v2.0.a1
pyrus_communis	pycom01g08210 pycom01g08290 pycom01g08460
rosa_chinensis	RchiOBHm_Chr1g0354661
rosa_laevigata	RLG00000028189
rosa_multiflora	Rmu_sc0003940.1_g000008 Rmu_sc0006632.1_g000013
rosa_roxburghii	Rroxscaffold_4G00300860
rosa_rugosa	Rorug01G0243700
rosa_samantha	Rh1AG255000 Rh1AG255800 Rh1DG253600
rosa_wichuraiana	Rw1G022310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	222
Acc36I	ACCTGC	1 cut(s)	124
Acc65I	GGTACC	1 cut(s)	989
AccB1I	GGYRCC	1 cut(s)	989
AccB7I	CCANNNNNTGG	1 cut(s)	343
AciI	CCGC	4 cut(s)	59, 331, 395, 741
AclWI	GGATC	1 cut(s)	1054
AcsI	RAATTY	3 cut(s)	40, 128, 558
AcuI	CTGAAG	3 cut(s)	923, 1174, 1349
AfaI	GTAC	6 cut(s)	179, 640, 825, 847, 991, 1429
AfeI	AGCGCT	1 cut(s)	263
AfiI	CCNNNNNNNGG	3 cut(s)	343, 1135, 1344
AflII	CTTAAG	1 cut(s)	1418
AgsI	TTSAA	6 cut(s)	19, 236, 268, 1152, 1403, 1439
AjnI	CCWGG	2 cut(s)	278, 995
AluBI	AGCT	4 cut(s)	711, 829, 1105, 1304
AluI	AGCT	4 cut(s)	711, 829, 1105, 1304
Alw21I	GWGCWC	1 cut(s)	1107
Alw26I	GTCTC	2 cut(s)	777, 1339
AlwI	GGATC	1 cut(s)	1054
AlwNI	CAGNNNCTG	1 cut(s)	802
Ama87I	CYCGRG	1 cut(s)	891
Aor51HI	AGCGCT	1 cut(s)	263
AoxI	GGCC	2 cut(s)	276, 281
ApeKI	GCWGC	2 cut(s)	56, 1412
ApoI	RAATTY	3 cut(s)	40, 128, 558
ArsI	GACNNNNNNTTYG	2 cut(s)	896, 928
Asp718I	GGTACC	1 cut(s)	989
AspLEI	GCGC	2 cut(s)	264, 532
AspS9I	GGNCC	1 cut(s)	282
AsuC2I	CCSGG	1 cut(s)	1261
AsuHPI	GGTGA	3 cut(s)	317, 386, 1002
AvaI	CYCGRG	1 cut(s)	891
BanI	GGYRCC	1 cut(s)	989
BanII	GRGCYC	1 cut(s)	1107
BbsI	GAAGAC	1 cut(s)	993
Bbv12I	GWGCWC	1 cut(s)	1107
BbvI	GCAGC	2 cut(s)	68, 1424
BccI	CCATC	6 cut(s)	569, 617, 836, 967, 1082, 1231
BceAI	ACGGC	1 cut(s)	155
BciT130I	CCWGG	2 cut(s)	280, 997
BciVI	GTATCC	2 cut(s)	436, 989
BcnI	CCSGG	1 cut(s)	1261
BcoDI	GTCTC	2 cut(s)	777, 1339
BfaI	CTAG	5 cut(s)	503, 585, 759, 770, 1064
BfoI	RGCGCY	1 cut(s)	265
BfrI	CTTAAG	1 cut(s)	1418
BfuAI	ACCTGC	1 cut(s)	124
BfuI	GTATCC	2 cut(s)	436, 989
BisI	GCNGC	2 cut(s)	57, 1413
BlpI	GCTNAGC	1 cut(s)	291
BlsI	GCNGC	2 cut(s)	58, 1414
Bme1390I	CCNGG	3 cut(s)	280, 997, 1261
BmeT110I	CYCGRG	1 cut(s)	891
BmgT120I	GGNCC	1 cut(s)	282
BmiI	GGNNCC	3 cut(s)	207, 957, 991
BmrFI	CCNGG	3 cut(s)	280, 997, 1261
BmrI	ACTGGG	2 cut(s)	687, 1334
BmsI	GCATC	4 cut(s)	277, 436, 789, 1303
BmuI	ACTGGG	2 cut(s)	687, 1334
BpiI	GAAGAC	1 cut(s)	993
Bpu1102I	GCTNAGC	1 cut(s)	291
BpuEI	CTTGAG	1 cut(s)	1392
BpuMI	CCSGG	1 cut(s)	1261
BsaBI	GATNNNNATC	2 cut(s)	579, 977
BsaJI	CCNNGG	1 cut(s)	171
BsaXI	ACNNNNNCTCC	2 cut(s)	977, 1007
Bsc4I	CCNNNNNNNGG	3 cut(s)	343, 1135, 1344
Bse1I	ACTGG	2 cut(s)	682, 1340
Bse3DI	GCAATG	2 cut(s)	1323, 1350
Bse8I	GATNNNNATC	2 cut(s)	579, 977
BseBI	CCWGG	2 cut(s)	280, 997
BseDI	CCNNGG	1 cut(s)	171
BseGI	GGATG	2 cut(s)	580, 628
BseJI	GATNNNNATC	2 cut(s)	579, 977
BseLI	CCNNNNNNNGG	3 cut(s)	343, 1135, 1344
BseMI	GCAATG	2 cut(s)	1323, 1350
BseMII	CTCAG	6 cut(s)	180, 305, 751, 840, 942, 1310
BseNI	ACTGG	2 cut(s)	682, 1340
BseRI	GAGGAG	3 cut(s)	104, 648, 924
BseXI	GCAGC	2 cut(s)	68, 1424
BsgI	GTGCAG	2 cut(s)	496, 1012
BshFI	GGCC	2 cut(s)	278, 283
BshNI	GGYRCC	1 cut(s)	989
BsiHKAI	GWGCWC	1 cut(s)	1107
BsiHKCI	CYCGRG	1 cut(s)	891
BsiSI	CCGG	1 cut(s)	1261
BslFI	GGGAC	1 cut(s)	730
BslI	CCNNNNNNNGG	3 cut(s)	343, 1135, 1344
BsmAI	GTCTC	2 cut(s)	777, 1339
BsmFI	GGGAC	1 cut(s)	730
BsnI	GGCC	2 cut(s)	278, 283
BsoBI	CYCGRG	1 cut(s)	891
Bsp1286I	GDGCHC	1 cut(s)	1107
Bsp143I	GATC	2 cut(s)	730, 1059
Bsp1720I	GCTNAGC	1 cut(s)	291
BspACI	CCGC	4 cut(s)	59, 331, 395, 741
BspANI	GGCC	2 cut(s)	278, 283
BspCNI	CTCAG	6 cut(s)	181, 304, 750, 841, 943, 1309
BspHI	TCATGA	1 cut(s)	1281
BspLI	GGNNCC	3 cut(s)	207, 957, 991
BspMI	ACCTGC	1 cut(s)	124
BspPI	GGATC	1 cut(s)	1054
BspT107I	GGYRCC	1 cut(s)	989
BspTI	CTTAAG	1 cut(s)	1418
BsrDI	GCAATG	2 cut(s)	1323, 1350
BsrI	ACTGG	2 cut(s)	682, 1340
BssECI	CCNNGG	1 cut(s)	171
BssMI	GATC	2 cut(s)	730, 1059
Bst2UI	CCWGG	2 cut(s)	280, 997
Bst4CI	ACNGT	2 cut(s)	989, 1218
Bst6I	CTCTTC	3 cut(s)	89, 623, 942
BstAFI	CTTAAG	1 cut(s)	1418
BstC8I	GCNNGC	4 cut(s)	528, 859, 1027, 1323
BstDEI	CTNAG	6 cut(s)	189, 291, 737, 849, 951, 1296
BstDSI	CCRYGG	1 cut(s)	171
BstEII	GGTNACC	1 cut(s)	323
BstF5I	GGATG	2 cut(s)	580, 628
BstH2I	RGCGCY	1 cut(s)	265
BstHHI	GCGC	2 cut(s)	264, 532
BstKTI	GATC	2 cut(s)	733, 1062
BstMAI	GTCTC	2 cut(s)	777, 1339
BstMBI	GATC	2 cut(s)	730, 1059
BstMWI	GCNNNNNNNGC	3 cut(s)	863, 1026, 1322
BstNI	CCWGG	2 cut(s)	280, 997
BstPI	GGTNACC	1 cut(s)	323
BstSCI	CCNGG	3 cut(s)	278, 995, 1259
BstV1I	GCAGC	2 cut(s)	68, 1424
BstV2I	GAAGAC	1 cut(s)	993
BstX2I	RGATCY	1 cut(s)	1059
BstXI	CCANNNNNNTGG	1 cut(s)	36
BstYI	RGATCY	1 cut(s)	1059
BsuI	GTATCC	2 cut(s)	436, 989
BsuRI	GGCC	2 cut(s)	278, 283
BtgI	CCRYGG	1 cut(s)	171
BtsCI	GGATG	2 cut(s)	580, 628
BveI	ACCTGC	1 cut(s)	124
Cac8I	GCNNGC	4 cut(s)	528, 859, 1027, 1323
CaiI	CAGNNNCTG	1 cut(s)	802
CciI	TCATGA	1 cut(s)	1281
CfoI	GCGC	2 cut(s)	264, 532
Cfr13I	GGNCC	1 cut(s)	282
Csp6I	GTAC	6 cut(s)	178, 639, 824, 846, 990, 1428
CviAII	CATG	4 cut(s)	30, 764, 1055, 1282
CviQI	GTAC	6 cut(s)	178, 639, 824, 846, 990, 1428
DdeI	CTNAG	6 cut(s)	189, 291, 737, 849, 951, 1296
DpnI	GATC	2 cut(s)	732, 1061
DpnII	GATC	2 cut(s)	730, 1059
Eam1104I	CTCTTC	3 cut(s)	89, 623, 942
EarI	CTCTTC	3 cut(s)	89, 623, 942
EciI	GGCGGA	1 cut(s)	410
Ecl136II	GAGCTC	1 cut(s)	1105
Eco24I	GRGCYC	1 cut(s)	1107
Eco47III	AGCGCT	1 cut(s)	263
Eco53kI	GAGCTC	1 cut(s)	1105
Eco57I	CTGAAG	3 cut(s)	923, 1174, 1349
Eco88I	CYCGRG	1 cut(s)	891
Eco91I	GGTNACC	1 cut(s)	323
EcoICRI	GAGCTC	1 cut(s)	1105
EcoO65I	GGTNACC	1 cut(s)	323
EcoRI	GAATTC	2 cut(s)	40, 128
EcoRII	CCWGG	2 cut(s)	278, 995
EcoT38I	GRGCYC	1 cut(s)	1107
FaeI	CATG	4 cut(s)	33, 767, 1058, 1285
FalI	AAGNNNNNCTT	6 cut(s)	216, 248, 813, 845, 1401, 1433
FaqI	GGGAC	1 cut(s)	730
FatI	CATG	4 cut(s)	29, 763, 1054, 1281
Fnu4HI	GCNGC	2 cut(s)	57, 1413
FokI	GGATG	2 cut(s)	587, 635
FriOI	GRGCYC	1 cut(s)	1107
Fsp4HI	GCNGC	2 cut(s)	57, 1413
FspBI	CTAG	5 cut(s)	503, 585, 759, 770, 1064
GlaI	GCGC	2 cut(s)	263, 531
GluI	GCNGC	2 cut(s)	57, 1413
HaeII	RGCGCY	1 cut(s)	265
HaeIII	GGCC	2 cut(s)	278, 283
HapII	CCGG	1 cut(s)	1261
HhaI	GCGC	2 cut(s)	264, 532
Hin1II	CATG	4 cut(s)	33, 767, 1058, 1285
Hin6I	GCGC	2 cut(s)	262, 530
HinP1I	GCGC	2 cut(s)	262, 530
HinfI	GANTC	8 cut(s)	718, 778, 809, 931, 1139, 1148, 1166, 1439
HpaII	CCGG	1 cut(s)	1261
HphI	GGTGA	3 cut(s)	317, 386, 1002
Hpy166II	GTNNAC	2 cut(s)	878, 1122
Hpy188I	TCNGA	6 cut(s)	190, 798, 886, 942, 1193, 1299
Hpy8I	GTNNAC	2 cut(s)	878, 1122
HpyAV	CCTTC	5 cut(s)	46, 196, 365, 969, 1029
HpyCH4III	ACNGT	2 cut(s)	989, 1218
HpyF10VI	GCNNNNNNNGC	3 cut(s)	863, 1026, 1322
HpyF3I	CTNAG	6 cut(s)	189, 291, 737, 849, 951, 1296
Hsp92II	CATG	4 cut(s)	33, 767, 1058, 1285
HspAI	GCGC	2 cut(s)	262, 530
KpnI	GGTACC	1 cut(s)	993
Kzo9I	GATC	2 cut(s)	730, 1059
LmnI	GCTCC	1 cut(s)	211
Lsp1109I	GCAGC	2 cut(s)	68, 1424
LweI	GCATC	4 cut(s)	277, 436, 789, 1303
MaeI	CTAG	5 cut(s)	503, 585, 759, 770, 1064
MaeIII	GTNAC	4 cut(s)	323, 551, 685, 1286
MalI	GATC	2 cut(s)	732, 1061
MboI	GATC	2 cut(s)	730, 1059
MboII	GAAGA	7 cut(s)	106, 640, 725, 929, 954, 993, 1355
MflI	RGATCY	1 cut(s)	1059
MhlI	GDGCHC	1 cut(s)	1107
MluCI	AATT	7 cut(s)	40, 128, 249, 296, 349, 558, 1251
MlyI	GAGTC	2 cut(s)	712, 925
MmeI	TCCRAC	3 cut(s)	1210, 1271, 1441
MseI	TTAA	6 cut(s)	147, 258, 473, 546, 1176, 1419
MspA1I	CMGCKG	2 cut(s)	59, 741
MspCI	CTTAAG	1 cut(s)	1418
MspI	CCGG	1 cut(s)	1261
MspR9I	CCNGG	3 cut(s)	280, 997, 1261
MvaI	CCWGG	2 cut(s)	280, 997
MwoI	GCNNNNNNNGC	3 cut(s)	863, 1026, 1322
NciI	CCSGG	1 cut(s)	1261
NdeII	GATC	2 cut(s)	730, 1059
NlaIII	CATG	4 cut(s)	33, 767, 1058, 1285
NlaIV	GGNNCC	3 cut(s)	207, 957, 991
NmeAIII	GCCGAG	1 cut(s)	996
NmuCI	GTSAC	2 cut(s)	323, 1286
PagI	TCATGA	1 cut(s)	1281
PfeI	GAWTC	6 cut(s)	778, 809, 1139, 1148, 1166, 1439
PflMI	CCANNNNNTGG	1 cut(s)	343
PkrI	GCNGC	2 cut(s)	58, 1414
PleI	GAGTC	2 cut(s)	712, 925
PpsI	GAGTC	2 cut(s)	712, 925
PsiI	TTATAA	1 cut(s)	222
Psp124BI	GAGCTC	1 cut(s)	1107
Psp6I	CCWGG	2 cut(s)	278, 995
PspEI	GGTNACC	1 cut(s)	323
PspGI	CCWGG	2 cut(s)	278, 995
PspN4I	GGNNCC	3 cut(s)	207, 957, 991
PspPI	GGNCC	1 cut(s)	282
PstNI	CAGNNNCTG	1 cut(s)	802
PsuI	RGATCY	1 cut(s)	1059
RsaI	GTAC	6 cut(s)	179, 640, 825, 847, 991, 1429
RsaNI	GTAC	6 cut(s)	178, 639, 824, 846, 990, 1428
SacI	GAGCTC	1 cut(s)	1107
SaqAI	TTAA	6 cut(s)	147, 258, 473, 546, 1176, 1419
SatI	GCNGC	2 cut(s)	57, 1413
Sau3AI	GATC	2 cut(s)	730, 1059
Sau96I	GGNCC	1 cut(s)	282
SchI	GAGTC	2 cut(s)	712, 925
ScrFI	CCNGG	3 cut(s)	280, 997, 1261
SduI	GDGCHC	1 cut(s)	1107
SfaNI	GCATC	4 cut(s)	277, 436, 789, 1303
SmlI	CTYRAG	2 cut(s)	1407, 1418
SmoI	CTYRAG	2 cut(s)	1407, 1418
Sse9I	AATT	7 cut(s)	40, 128, 249, 296, 349, 558, 1251
SsiI	CCGC	4 cut(s)	59, 331, 395, 741
SspI	AATATT	1 cut(s)	214
SspMI	CTAG	5 cut(s)	503, 585, 759, 770, 1064
SstI	GAGCTC	1 cut(s)	1107
StyD4I	CCNGG	3 cut(s)	278, 995, 1259
TaaI	ACNGT	2 cut(s)	989, 1218
TaqI	TCGA	3 cut(s)	66, 781, 1382
TaqII	GACCGA	1 cut(s)	311
TasI	AATT	7 cut(s)	40, 128, 249, 296, 349, 558, 1251
TatI	WGTACW	3 cut(s)	177, 638, 823
TfiI	GAWTC	6 cut(s)	778, 809, 1139, 1148, 1166, 1439
Tru1I	TTAA	6 cut(s)	147, 258, 473, 546, 1176, 1419
Tru9I	TTAA	6 cut(s)	147, 258, 473, 546, 1176, 1419
TseFI	GTSAC	2 cut(s)	323, 1286
TseI	GCWGC	2 cut(s)	56, 1412
Tsp45I	GTSAC	2 cut(s)	323, 1286
TspDTI	ATGAA	7 cut(s)	65, 393, 425, 426, 470, 623, 1210
Van91I	CCANNNNNTGG	1 cut(s)	343
Vha464I	CTTAAG	1 cut(s)	1418
XapI	RAATTY	3 cut(s)	40, 128, 558
XbaI	TCTAGA	1 cut(s)	502
XspI	CTAG	5 cut(s)	503, 585, 759, 770, 1064

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.