FvH4_7g14010

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
12464402 .. 12470565
6164 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g14010.t2

Sequence Viewer

Length: 1476 bp
ATGGGGGGCCAATGCTCCAAACTCATACCATGCTGCGGGGATTCACAATTCAATGCAGCCGCAGTTCTTGAAGCTCCAACTATTGAAAATGTGGAGAAGAGCGAGGTTGACTACTTGCCTAGATTTTGTGAATTCACACTTGAGCAACTCAAAAATGCGACATCTGGTTTTGCAGTGGAATACATTATATCTGAACAGGGAGAGAAGGCTCCAAATGTTGTTTATAAAGGGAAATTGGAAAACCAGATGAGAATTGCTGTTAAGCGCTTCAATAAGGTGGCTTGGCCTGATGCTCGGCAATTTGTGGAGGAGGCAAGATTGGTTGGTCAGCTCCGCAACCATAGATTGGTTAATTTGCTTGGCTGCTGCGGCCAAGGTGATGAGAGGTTGCTTGTGGCAGAATATATGCCCAATGACACACTTGCAAAACACCTTTTCCATTGGGATGCACAGCCTATGAAATGGACAATGCGATTAAGGGTTGTTTTACATCTTGCGCAAGCCCTAGAATACTGCACAAGCAAGGGGCGTGCCCTTTATCATGACCTTAATGCTTACAGAGTTTTATTTGATGAGAATAGTAATCCTAGATTATCTACATTTGGTTTGATGAAAAATAGTAGGGACGGGAAGAGTTATAGTACAAATCTGGCATTTACTCCTCCTGAATATCTTAGAACTGGGAGAGTGACACCAGACAGTGTGATTTACAGCTTTGGGACTCTTTTACTCGATCTTCTCAGTGGAAAGCATATTCCCCCTAGTCATGCCCTAGACCTAATTAGGGACAGAAATCTTCAGATGCTGACAGATTCGTGCTTGGAAGGACAGCTGTCTCAAGATGATGGTACTGAATTGGTACGCTTGGCTTCGCGATGTTTACAATCTGAACCTCGAGAGCGACCAAATCCAAAGTCATTAGTAGCTGCATTGACTACTCTTCAGAAAGAAACTGAGATTCCTTCTCATGTTTTGATGGGTATCCCGCACACTAACTCCTGCTCTCCTCTTTCACCACTTGGTGAAGCCTGCTCCAGAAGGGATTTGACTGCAGTCCATGAGATCCTAGAGAATATCGGCTACAAAGATGATGGAATGACAAATGAGCTCTCGTTCCAAATGTGGACTGACCAAATGCAGGAAACGTTAGATTCAAAGAAAAATGGGGATTCCGCTTTTAAGAAAAAGGACTTCAGAACTGCAATCGAGTGTTATTCACAGTTCATTGATATTGGAAACATGGTTTCTCCCACAATCTTTGCCCGTCGTAGTTTGTCTTATCTCATGGATGGGATGCCTCAGGAAGCTCTGAACGATGCAATGCAAGCTCAAGTAGTTTCCCCAATATGGCACATTGCATCTTATCTACAGGCTGCTGCCCTTTCTGCACTCGGAATGGAGATGGAGGCACAATCAGCACTGAAGGAGGGTACTGTTCTTGAAGCCAAAAGGAACACTGCAGCTGGACACAAGTGA

Protein Analysis

492

Amino Acids

54.95

Weight (kDa)

6.0

Isoelectric Point (pI)

43.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 2 - 228 1.6e-26 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 3 - 226 4.9e-22 Protein kinase domain
TPR_BSK1_C PF25575 260 - 376 2.2e-61 Serine/threonine-protein kinase BSK1-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 225
Acc16I TGCGCA 1 cut(s) 498
AccB7I CCANNNNNTGG 1 cut(s) 346
AccII CGCG 1 cut(s) 874
AciI CCGC 6 cut(s) 36, 60, 334, 369, 986, 1173
AclI AACGTT 1 cut(s) 1145
AclWI GGATC 1 cut(s) 1057
AcoI YGGCCR 1 cut(s) 370
AcsI RAATTY 1 cut(s) 131
AcuI CTGAAG 4 cut(s) 782, 926, 1177, 1442
AdeI CACNNNGTG 1 cut(s) 1022
AfaI GTAC 4 cut(s) 643, 850, 861, 1432
AfeI AGCGCT 1 cut(s) 266
AfiI CCNNNNNNNGG 5 cut(s) 35, 346, 784, 1138, 1347
AgsI TTSAA 6 cut(s) 52, 71, 86, 271, 1155, 1442
AluBI AGCT 9 cut(s) 74, 331, 714, 832, 926, 1108, 1307, 1328, 1463
AluI AGCT 9 cut(s) 74, 331, 714, 832, 926, 1108, 1307, 1328, 1463
Alw21I GWGCWC 1 cut(s) 1110
Alw26I GTCTC 1 cut(s) 840
AlwI GGATC 1 cut(s) 1057
AlwNI CAGNNNCTG 1 cut(s) 805
Ama87I CYCGRG 1 cut(s) 894
Aor51HI AGCGCT 1 cut(s) 266
AoxI GGCC 3 cut(s) 7, 284, 370
ApeKI GCWGC 8 cut(s) 33, 56, 363, 366, 926, 1373, 1376, 1460
ApoI RAATTY 1 cut(s) 131
ArsI GACNNNNNNTTYG 2 cut(s) 899, 931
AspLEI GCGC 2 cut(s) 267, 499
AspS9I GGNCC 1 cut(s) 7
AsuHPI GGTGA 3 cut(s) 389, 1005, 1034
AvaI CYCGRG 1 cut(s) 894
AxyI CCTNAGG 1 cut(s) 1299
BaeGI GKGCMC 1 cut(s) 535
BanII GRGCYC 1 cut(s) 1110
Bbv12I GWGCWC 1 cut(s) 1110
BbvI GCAGC 8 cut(s) 20, 68, 350, 353, 913, 1360, 1363, 1472
BccI CCATC 5 cut(s) 839, 970, 1085, 1283, 1396
BciVI GTATCC 1 cut(s) 992
BcoDI GTCTC 1 cut(s) 840
BfaI CTAG 6 cut(s) 120, 506, 588, 762, 773, 1067
BfmI CTRYAG 3 cut(s) 1050, 1367, 1458
BfoI RGCGCY 1 cut(s) 268
BfuI GTATCC 1 cut(s) 992
BmeT110I CYCGRG 1 cut(s) 894
BmgT120I GGNCC 1 cut(s) 7
BmiI GGNNCC 2 cut(s) 8, 210
BmrI ACTGGG 1 cut(s) 690
BmsI GCATC 6 cut(s) 280, 436, 792, 1284, 1306, 1367
BmuI ACTGGG 1 cut(s) 690
BoxI GACNNNNGTC 2 cut(s) 832, 1052
BpmI CTGGAG 1 cut(s) 1018
BpuEI CTTGAG 3 cut(s) 161, 822, 1314
BsaBI GATNNNNATC 1 cut(s) 980
BsaJI CCNNGG 1 cut(s) 373
BsaXI ACNNNNNCTCC 2 cut(s) 980, 1010
Bsc4I CCNNNNNNNGG 5 cut(s) 35, 346, 784, 1138, 1347
Bse1I ACTGG 1 cut(s) 685
Bse21I CCTNAGG 1 cut(s) 1299
Bse3DI GCAATG 2 cut(s) 1326, 1353
Bse8I GATNNNNATC 1 cut(s) 980
BseDI CCNNGG 1 cut(s) 373
BseGI GGATG 3 cut(s) 451, 1294, 1299
BseJI GATNNNNATC 1 cut(s) 980
BseLI CCNNNNNNNGG 5 cut(s) 35, 346, 784, 1138, 1347
BseMI GCAATG 2 cut(s) 1326, 1353
BseMII CTCAG 3 cut(s) 754, 945, 1313
BseNI ACTGG 1 cut(s) 685
BseRI GAGGAG 3 cut(s) 323, 651, 996
BseSI GKGCMC 1 cut(s) 535
BseXI GCAGC 8 cut(s) 20, 68, 350, 353, 913, 1360, 1363, 1472
BsgI GTGCAG 2 cut(s) 499, 1371
Bsh1236I CGCG 1 cut(s) 874
BshFI GGCC 3 cut(s) 9, 286, 372
BsiHKAI GWGCWC 1 cut(s) 1110
BsiHKCI CYCGRG 1 cut(s) 894
BslFI GGGAC 3 cut(s) 638, 733, 800
BslI CCNNNNNNNGG 5 cut(s) 35, 346, 784, 1138, 1347
BsmAI GTCTC 1 cut(s) 840
BsmFI GGGAC 3 cut(s) 638, 733, 800
BsnI GGCC 3 cut(s) 9, 286, 372
BsoBI CYCGRG 1 cut(s) 894
Bsp1286I GDGCHC 2 cut(s) 535, 1110
Bsp143I GATC 2 cut(s) 733, 1062
Bsp68I TCGCGA 1 cut(s) 874
BspACI CCGC 6 cut(s) 36, 60, 334, 369, 986, 1173
BspANI GGCC 3 cut(s) 9, 286, 372
BspCNI CTCAG 3 cut(s) 753, 946, 1312
BspFNI CGCG 1 cut(s) 874
BspHI TCATGA 1 cut(s) 541
BspLI GGNNCC 2 cut(s) 8, 210
BspMAI CTGCAG 2 cut(s) 1054, 1462
BspPI GGATC 1 cut(s) 1057
BspQI GCTCTTC 1 cut(s) 92
BsrDI GCAATG 2 cut(s) 1326, 1353
BsrI ACTGG 1 cut(s) 685
BssECI CCNNGG 1 cut(s) 373
BssMI GATC 2 cut(s) 733, 1062
BssT1I CCWWGG 1 cut(s) 373
Bst4CI ACNGT 3 cut(s) 701, 1221, 1435
Bst6I CTCTTC 3 cut(s) 92, 626, 945
BstC8I GCNNGC 4 cut(s) 501, 531, 1030, 1326
BstDEI CTNAG 4 cut(s) 674, 740, 954, 1299
BstF5I GGATG 3 cut(s) 451, 1294, 1299
BstFNI CGCG 1 cut(s) 874
BstH2I RGCGCY 1 cut(s) 268
BstHHI GCGC 2 cut(s) 267, 499
BstKTI GATC 2 cut(s) 736, 1065
BstMAI GTCTC 1 cut(s) 840
BstMBI GATC 2 cut(s) 733, 1062
BstMWI GCNNNNNNNGC 4 cut(s) 369, 1325, 1385, 1415
BstPAI GACNNNNGTC 2 cut(s) 832, 1052
BstSFI CTRYAG 3 cut(s) 1050, 1367, 1458
BstSLI GKGCMC 1 cut(s) 535
BstUI CGCG 1 cut(s) 874
BstV1I GCAGC 8 cut(s) 20, 68, 350, 353, 913, 1360, 1363, 1472
BstX2I RGATCY 1 cut(s) 1062
BstYI RGATCY 1 cut(s) 1062
Bsu36I CCTNAGG 1 cut(s) 1299
BsuI GTATCC 1 cut(s) 992
BsuRI GGCC 3 cut(s) 9, 286, 372
BtgZI GCGATG 1 cut(s) 889
BtsCI GGATG 3 cut(s) 451, 1294, 1299
BtsI GCAGTG 2 cut(s) 180, 1455
BtsIMutI CAGTG 5 cut(s) 180, 706, 748, 1418, 1455
BtuMI TCGCGA 1 cut(s) 874
Cac8I GCNNGC 4 cut(s) 501, 531, 1030, 1326
CaiI CAGNNNCTG 1 cut(s) 805
CciI TCATGA 1 cut(s) 541
CfoI GCGC 2 cut(s) 267, 499
Cfr13I GGNCC 1 cut(s) 7
Csp6I GTAC 4 cut(s) 642, 849, 860, 1431
CspCI CAANNNNNGTGG 2 cut(s) 1240, 1275
CviAII CATG 7 cut(s) 30, 542, 767, 968, 1058, 1240, 1285
CviQI GTAC 4 cut(s) 642, 849, 860, 1431
DdeI CTNAG 4 cut(s) 674, 740, 954, 1299
DpnI GATC 2 cut(s) 735, 1064
DpnII GATC 2 cut(s) 733, 1062
DraIII CACNNNGTG 1 cut(s) 1022
EaeI YGGCCR 1 cut(s) 370
Eam1104I CTCTTC 3 cut(s) 92, 626, 945
EarI CTCTTC 3 cut(s) 92, 626, 945
Ecl136II GAGCTC 1 cut(s) 1108
Eco130I CCWWGG 1 cut(s) 373
Eco24I GRGCYC 1 cut(s) 1110
Eco47III AGCGCT 1 cut(s) 266
Eco53kI GAGCTC 1 cut(s) 1108
Eco57I CTGAAG 4 cut(s) 782, 926, 1177, 1442
Eco81I CCTNAGG 1 cut(s) 1299
Eco88I CYCGRG 1 cut(s) 894
EcoICRI GAGCTC 1 cut(s) 1108
EcoRI GAATTC 1 cut(s) 131
EcoT14I CCWWGG 1 cut(s) 373
EcoT38I GRGCYC 1 cut(s) 1110
ErhI CCWWGG 1 cut(s) 373
FaeI CATG 7 cut(s) 33, 545, 770, 971, 1061, 1243, 1288
FaqI GGGAC 3 cut(s) 638, 733, 800
FatI CATG 7 cut(s) 29, 541, 766, 967, 1057, 1239, 1284
FauI CCCGC 2 cut(s) 29, 993
FokI GGATG 3 cut(s) 458, 1301, 1306
FriOI GRGCYC 1 cut(s) 1110
FspBI CTAG 6 cut(s) 120, 506, 588, 762, 773, 1067
FspI TGCGCA 1 cut(s) 498
GlaI GCGC 2 cut(s) 266, 498
GsuI CTGGAG 1 cut(s) 1018
HaeII RGCGCY 1 cut(s) 268
HaeIII GGCC 3 cut(s) 9, 286, 372
HhaI GCGC 2 cut(s) 267, 499
Hin1II CATG 7 cut(s) 33, 545, 770, 971, 1061, 1243, 1288
Hin6I GCGC 2 cut(s) 265, 497
HinP1I GCGC 2 cut(s) 265, 497
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HinfI GANTC 6 cut(s) 41, 721, 812, 958, 1151, 1169
HphI GGTGA 3 cut(s) 389, 1005, 1034
Hpy166II GTNNAC 3 cut(s) 109, 881, 1125
Hpy188I TCNGA 7 cut(s) 193, 801, 889, 945, 1196, 1311, 1394
Hpy188III TCNNGA 9 cut(s) 68, 542, 665, 839, 873, 896, 1035, 1301, 1439
Hpy8I GTNNAC 3 cut(s) 109, 881, 1125
Hpy99I CGWCG 1 cut(s) 1269
HpyAV CCTTC 5 cut(s) 199, 818, 972, 1032, 1417
HpyCH4III ACNGT 3 cut(s) 701, 1221, 1435
HpyCH4IV ACGT 1 cut(s) 1145
HpyF10VI GCNNNNNNNGC 4 cut(s) 369, 1325, 1385, 1415
HpyF3I CTNAG 4 cut(s) 674, 740, 954, 1299
HpySE526I ACGT 1 cut(s) 1145
Hsp92II CATG 7 cut(s) 33, 545, 770, 971, 1061, 1243, 1288
HspAI GCGC 2 cut(s) 265, 497
Kzo9I GATC 2 cut(s) 733, 1062
LguI GCTCTTC 1 cut(s) 92
LmnI GCTCC 5 cut(s) 20, 79, 214, 336, 1037
Lsp1109I GCAGC 8 cut(s) 20, 68, 350, 353, 913, 1360, 1363, 1472
LweI GCATC 6 cut(s) 280, 436, 792, 1284, 1306, 1367
MaeI CTAG 6 cut(s) 120, 506, 588, 762, 773, 1067
MaeII ACGT 1 cut(s) 1145
MaeIII GTNAC 1 cut(s) 688
MalI GATC 2 cut(s) 735, 1064
MboI GATC 2 cut(s) 733, 1062
MboII GAAGA 5 cut(s) 109, 643, 728, 788, 932
MflI RGATCY 1 cut(s) 1062
MhlI GDGCHC 2 cut(s) 535, 1110
MluCI AATT 8 cut(s) 47, 131, 233, 252, 299, 352, 780, 854
MlyI GAGTC 1 cut(s) 715
MmeI TCCRAC 1 cut(s) 101
MseI TTAA 5 cut(s) 261, 351, 476, 549, 1179
MslI CAYNNNNRTG 1 cut(s) 444
MspA1I CMGCKG 2 cut(s) 832, 1463
MvnI CGCG 1 cut(s) 874
MwoI GCNNNNNNNGC 4 cut(s) 369, 1325, 1385, 1415
NdeII GATC 2 cut(s) 733, 1062
NlaIII CATG 7 cut(s) 33, 545, 770, 971, 1061, 1243, 1288
NlaIV GGNNCC 2 cut(s) 8, 210
NmeAIII GCCGAG 1 cut(s) 274
NmuCI GTSAC 1 cut(s) 688
NruI TCGCGA 1 cut(s) 874
NsbI TGCGCA 1 cut(s) 498
PaeR7I CTCGAG 1 cut(s) 894
PagI TCATGA 1 cut(s) 541
PciSI GCTCTTC 1 cut(s) 92
PfeI GAWTC 5 cut(s) 41, 812, 958, 1151, 1169
PflMI CCANNNNNTGG 1 cut(s) 346
PleI GAGTC 1 cut(s) 715
PpsI GAGTC 1 cut(s) 715
PshAI GACNNNNGTC 2 cut(s) 832, 1052
PsiI TTATAA 1 cut(s) 225
Psp124BI GAGCTC 1 cut(s) 1110
Psp1406I AACGTT 1 cut(s) 1145
PspN4I GGNNCC 2 cut(s) 8, 210
PspPI GGNCC 1 cut(s) 7
PstI CTGCAG 2 cut(s) 1054, 1462
PstNI CAGNNNCTG 1 cut(s) 805
PsuI RGATCY 1 cut(s) 1062
PvuII CAGCTG 2 cut(s) 832, 1463
RruI TCGCGA 1 cut(s) 874
RsaI GTAC 4 cut(s) 643, 850, 861, 1432
RsaNI GTAC 4 cut(s) 642, 849, 860, 1431
RseI CAYNNNNRTG 1 cut(s) 444
SacI GAGCTC 1 cut(s) 1110
SapI GCTCTTC 1 cut(s) 92
SaqAI TTAA 5 cut(s) 261, 351, 476, 549, 1179
Sau3AI GATC 2 cut(s) 733, 1062
Sau96I GGNCC 1 cut(s) 7
SchI GAGTC 1 cut(s) 715
SduI GDGCHC 2 cut(s) 535, 1110
SfaNI GCATC 6 cut(s) 280, 436, 792, 1284, 1306, 1367
SfcI CTRYAG 3 cut(s) 1050, 1367, 1458
Sfr274I CTCGAG 1 cut(s) 894
SlaI CTCGAG 1 cut(s) 894
SmiMI CAYNNNNRTG 1 cut(s) 444
SmlI CTYRAG 4 cut(s) 140, 837, 894, 1329
SmoI CTYRAG 4 cut(s) 140, 837, 894, 1329
Sse9I AATT 8 cut(s) 47, 131, 233, 252, 299, 352, 780, 854
SsiI CCGC 6 cut(s) 36, 60, 334, 369, 986, 1173
SspMI CTAG 6 cut(s) 120, 506, 588, 762, 773, 1067
SstI GAGCTC 1 cut(s) 1110
StyI CCWWGG 1 cut(s) 373
TaaI ACNGT 3 cut(s) 701, 1221, 1435
TaiI ACGT 1 cut(s) 1148
TaqI TCGA 3 cut(s) 732, 895, 1206
TasI AATT 8 cut(s) 47, 131, 233, 252, 299, 352, 780, 854
TatI WGTACW 1 cut(s) 641
TauI GCSGC 2 cut(s) 62, 372
TfiI GAWTC 5 cut(s) 41, 812, 958, 1151, 1169
Tru1I TTAA 5 cut(s) 261, 351, 476, 549, 1179
Tru9I TTAA 5 cut(s) 261, 351, 476, 549, 1179
TscAI CASTG 5 cut(s) 180, 706, 748, 1425, 1462
TseFI GTSAC 1 cut(s) 688
TseI GCWGC 8 cut(s) 33, 56, 363, 366, 926, 1373, 1376, 1460
Tsp45I GTSAC 1 cut(s) 688
TspDTI ATGAA 3 cut(s) 473, 626, 1213
TspRI CASTG 5 cut(s) 180, 706, 748, 1425, 1462
Van91I CCANNNNNTGG 1 cut(s) 346
XapI RAATTY 1 cut(s) 131
XhoI CTCGAG 1 cut(s) 894
XspI CTAG 6 cut(s) 120, 506, 588, 762, 773, 1067
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.