Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0012677

Physical Location & Seq

Genomic Coordinates Reverse (-)

52547946 .. 52549409

Gene Structure 1464 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG260700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGCATCCGATAATTCTAGCAACAACGACCTTCTTCTCCAGCAGCTGAAGGCCTTTGACGAATCCAAAGCTGGTATAAAAGGACTCGTGGATGCCGGAATCACAAAAGTCCCACAGATTTGCATCATACCACCGAAGGATCGCGCCAGCCAGGAACCAAGTGCTGGAAATATCCCTGTCATTGACCTCAGTGACATTATTGTGAAGCGTGATGAGGTGGTTGAACAAGTCCGGCGGGCTGCAGGGACTGTAGGGTTCTTCCAGGTGGTGAACCATGGGATACCGAATGAGTTAATGGACGAAATGATAGAGGGGGTGCGTGGATTTCACTACCTACCAAAGGAGGAGAAGGCTGAGTACTATACTAGAGAACTCCTGAGGAATGTGAAGTACTTCAGTAGCTTCAATTTATATGAGTCAAGATATGCTTCTTGGAAGGACACCATGTTTAGTGAAATGGCGAATCTTGATCCTCAAGAATTGCCACTGGTTTTAAGGGATATAAGTTTACGGTACTATAACCAAGCTTACAAGTTAGCTATTACTTTGTTTGAACTGCTATCCGAGGCACTAGGGCTCAAATCTAACCACCTTGTAGAGTTGGGTGGTCTGAAGGGGTGTCTTCTAGCCACTCACTTCTATCCACCATGTCCTGAGCCTGAACTGACCATTGGCAAAGTCGCCCACTCGGATGGTTGTTTTCTCACCATCCTCCTTCAAGACCAAATTGGTGGACTCCAGATTCTAAATGACGACAAATGGATTGACATTGCTCCTGTGCCTGGAGCTCTAATTATCAATGTCGGAGATTTCTTGCAGCTAGTCTCTAATGACAGGTTCATAAGTGTCAAACACCGAGTGTTGGCCAAAAAGGAAGGTCCAAGAATATCTGCGGGATGCTTTTTCAGAGATATTTCACGGGAAAGTTTGGACAAAGTGTATGAACCAATCAAGGAGTTGACATCTGATGATGACAATCCTCCAATTTACCGAGGAACGAGTGTAAAAGACTATGTTGCAGGCTATTACAGGCAAGGACTCTTCAGTGGCGCCTATAACGGACTAGAATATTTGAAGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

360

Amino Acids

40.39

Weight (kDa)

5.24

Isoelectric Point (pI)

33.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	58 - 152	1.7e-21	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	207 - 303	9.1e-30	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012677)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0358541 RchiOBHm_Chr1g0358551
rosa_laevigata	RLG00000027948 RLG00000027949 RLG00000027950 RLG00000027951 RLG00000027952 RLG00000027953
rosa_multiflora	Rmu_sc0001609.1_g000006
rosa_roxburghii	Rroxscaffold_4G00297820
rosa_rugosa	Rorug01G0262500 Rorug01G0262500 Rorug01G0262500 Rorug01G0262500 Rorug01G0262600
rosa_samantha	Rh1AG277300 Rh1BG243500 Rh1BG243600 Rh1CG260700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1049
AccB7I	CCANNNNNTGG	1 cut(s)	164
AccII	CGCG	1 cut(s)	144
AciI	CCGC	2 cut(s)	235, 893
AclWI	GGATC	2 cut(s)	147, 464
AcoI	YGGCCR	1 cut(s)	864
AcuI	CTGAAG	4 cut(s)	68, 379, 632, 1027
AcyI	GRCGYC	1 cut(s)	1050
AdeI	CACNNNGTG	1 cut(s)	859
AfaI	GTAC	3 cut(s)	359, 392, 515
AfiI	CCNNNNNNNGG	4 cut(s)	164, 340, 782, 862
AgsI	TTSAA	5 cut(s)	224, 406, 554, 719, 1075
AjnI	CCWGG	3 cut(s)	150, 261, 781
AjuI	GAANNNNNNNTTGG	2 cut(s)	654, 686
AluBI	AGCT	8 cut(s)	46, 71, 402, 527, 539, 788, 820, 1078
AluI	AGCT	8 cut(s)	46, 71, 402, 527, 539, 788, 820, 1078
Alw21I	GWGCWC	1 cut(s)	790
Alw26I	GTCTC	1 cut(s)	829
AlwI	GGATC	2 cut(s)	147, 464
AlwNI	CAGNNNCTG	2 cut(s)	46, 248
AoxI	GGCC	2 cut(s)	51, 864
ApeKI	GCWGC	3 cut(s)	43, 239, 817
Asp700I	GAANNNNTTC	1 cut(s)	392
AspLEI	GCGC	2 cut(s)	146, 1052
AspS9I	GGNCC	1 cut(s)	878
AsuHPI	GGTGA	2 cut(s)	280, 697
AvaII	GGWCC	1 cut(s)	878
AxyI	CCTNAGG	1 cut(s)	377
BalI	TGGCCA	1 cut(s)	866
BanI	GGYRCC	1 cut(s)	1049
BanII	GRGCYC	2 cut(s)	579, 790
BarI	GAAGNNNNNNTAC	2 cut(s)	341, 373
BauI	CACGAG	1 cut(s)	86
BbsI	GAAGAC	1 cut(s)	614
Bbv12I	GWGCWC	1 cut(s)	790
BbvI	GCAGC	3 cut(s)	55, 226, 829
BccI	CCATC	2 cut(s)	686, 716
BciT130I	CCWGG	3 cut(s)	152, 263, 783
BciVI	GTATCC	1 cut(s)	273
BcoDI	GTCTC	1 cut(s)	829
BfaI	CTAG	6 cut(s)	18, 366, 572, 626, 821, 1064
BfmI	CTRYAG	2 cut(s)	240, 249
BfoI	RGCGCY	1 cut(s)	1053
BfuI	GTATCC	1 cut(s)	273
BisI	GCNGC	3 cut(s)	44, 240, 818
BlsI	GCNGC	3 cut(s)	45, 241, 819
BmcAI	AGTACT	2 cut(s)	359, 392
Bme1390I	CCNGG	3 cut(s)	152, 263, 783
Bme18I	GGWCC	1 cut(s)	878
BmgT120I	GGNCC	1 cut(s)	878
BmiI	GGNNCC	2 cut(s)	156, 1051
BmrFI	CCNGG	3 cut(s)	152, 263, 783
BmsI	GCATC	4 cut(s)	14, 82, 132, 887
BpiI	GAAGAC	1 cut(s)	614
BpmI	CTGGAG	3 cut(s)	23, 722, 804
Bpu10I	CCTNAGC	1 cut(s)	654
BpuEI	CTTGAG	1 cut(s)	459
BsaBI	GATNNNNATC	2 cut(s)	122, 975
BsaHI	GRCGYC	1 cut(s)	1050
BsaJI	CCNNGG	3 cut(s)	274, 564, 991
Bsc4I	CCNNNNNNNGG	4 cut(s)	164, 340, 782, 862
Bse1I	ACTGG	1 cut(s)	492
Bse21I	CCTNAGG	1 cut(s)	377
Bse3DI	GCAATG	1 cut(s)	768
Bse8I	GATNNNNATC	2 cut(s)	122, 975
BseBI	CCWGG	3 cut(s)	152, 263, 783
BseDI	CCNNGG	3 cut(s)	274, 564, 991
BseGI	GGATG	5 cut(s)	5, 97, 697, 708, 902
BseJI	GATNNNNATC	2 cut(s)	122, 975
BseLI	CCNNNNNNNGG	4 cut(s)	164, 340, 782, 862
BseMI	GCAATG	1 cut(s)	768
BseMII	CTCAG	4 cut(s)	202, 345, 368, 645
BseNI	ACTGG	1 cut(s)	492
BseRI	GAGGAG	1 cut(s)	359
BseXI	GCAGC	3 cut(s)	55, 226, 829
Bsh1236I	CGCG	1 cut(s)	144
BshFI	GGCC	2 cut(s)	53, 866
BshNI	GGYRCC	1 cut(s)	1049
BsiHKAI	GWGCWC	1 cut(s)	790
BsiSI	CCGG	2 cut(s)	96, 232
BslFI	GGGAC	2 cut(s)	95, 259
BslI	CCNNNNNNNGG	4 cut(s)	164, 340, 782, 862
BsmAI	GTCTC	1 cut(s)	829
BsmFI	GGGAC	2 cut(s)	95, 259
BsnI	GGCC	2 cut(s)	53, 866
Bsp1286I	GDGCHC	2 cut(s)	579, 790
Bsp143I	GATC	2 cut(s)	139, 469
Bsp19I	CCATGG	1 cut(s)	274
BspACI	CCGC	2 cut(s)	235, 893
BspANI	GGCC	2 cut(s)	53, 866
BspCNI	CTCAG	4 cut(s)	201, 346, 369, 646
BspFNI	CGCG	1 cut(s)	144
BspLI	GGNNCC	2 cut(s)	156, 1051
BspMAI	CTGCAG	1 cut(s)	244
BspPI	GGATC	2 cut(s)	147, 464
BspT107I	GGYRCC	1 cut(s)	1049
BsrDI	GCAATG	1 cut(s)	768
BsrI	ACTGG	1 cut(s)	492
BssECI	CCNNGG	3 cut(s)	274, 564, 991
BssMI	GATC	2 cut(s)	139, 469
BssNI	GRCGYC	1 cut(s)	1050
BssSI	CACGAG	1 cut(s)	86
BssT1I	CCWWGG	1 cut(s)	274
Bst2BI	CACGAG	1 cut(s)	86
Bst2UI	CCWGG	3 cut(s)	152, 263, 783
Bst4CI	ACNGT	2 cut(s)	250, 513
Bst6I	CTCTTC	1 cut(s)	1046
BstACI	GRCGYC	1 cut(s)	1050
BstC8I	GCNNGC	3 cut(s)	148, 237, 1021
BstDEI	CTNAG	4 cut(s)	188, 354, 377, 654
BstDSI	CCRYGG	1 cut(s)	274
BstENI	CCTNNNNNAGG	1 cut(s)	338
BstF5I	GGATG	5 cut(s)	5, 97, 697, 708, 902
BstFNI	CGCG	1 cut(s)	144
BstH2I	RGCGCY	1 cut(s)	1053
BstHHI	GCGC	2 cut(s)	146, 1052
BstKTI	GATC	2 cut(s)	142, 472
BstMAI	GTCTC	1 cut(s)	829
BstMBI	GATC	2 cut(s)	139, 469
BstNI	CCWGG	3 cut(s)	152, 263, 783
BstSCI	CCNGG	3 cut(s)	150, 261, 781
BstSFI	CTRYAG	2 cut(s)	240, 249
BstUI	CGCG	1 cut(s)	144
BstV1I	GCAGC	3 cut(s)	55, 226, 829
BstV2I	GAAGAC	1 cut(s)	614
BstXI	CCANNNNNNTGG	2 cut(s)	692, 731
Bsu36I	CCTNAGG	1 cut(s)	377
BsuI	GTATCC	1 cut(s)	273
BsuRI	GGCC	2 cut(s)	53, 866
BtgI	CCRYGG	1 cut(s)	274
BtsCI	GGATG	5 cut(s)	5, 97, 697, 708, 902
BtsIMutI	CAGTG	3 cut(s)	196, 485, 1051
Cac8I	GCNNGC	3 cut(s)	148, 237, 1021
CaiI	CAGNNNCTG	2 cut(s)	46, 248
CfoI	GCGC	2 cut(s)	146, 1052
Cfr13I	GGNCC	1 cut(s)	878
Csp6I	GTAC	3 cut(s)	358, 391, 514
CviAII	CATG	3 cut(s)	275, 445, 648
CviQI	GTAC	3 cut(s)	358, 391, 514
DdeI	CTNAG	4 cut(s)	188, 354, 377, 654
DinI	GGCGCC	1 cut(s)	1051
DpnI	GATC	2 cut(s)	141, 471
DpnII	GATC	2 cut(s)	139, 469
DraIII	CACNNNGTG	1 cut(s)	859
EaeI	YGGCCR	1 cut(s)	864
Eam1104I	CTCTTC	1 cut(s)	1046
EarI	CTCTTC	1 cut(s)	1046
Ecl136II	GAGCTC	1 cut(s)	788
Eco130I	CCWWGG	1 cut(s)	274
Eco147I	AGGCCT	1 cut(s)	53
Eco24I	GRGCYC	2 cut(s)	579, 790
Eco47I	GGWCC	1 cut(s)	878
Eco53kI	GAGCTC	1 cut(s)	788
Eco57I	CTGAAG	4 cut(s)	68, 379, 632, 1027
Eco81I	CCTNAGG	1 cut(s)	377
EcoICRI	GAGCTC	1 cut(s)	788
EcoNI	CCTNNNNNAGG	1 cut(s)	338
EcoRII	CCWGG	3 cut(s)	150, 261, 781
EcoT14I	CCWWGG	1 cut(s)	274
EcoT38I	GRGCYC	2 cut(s)	579, 790
EgeI	GGCGCC	1 cut(s)	1051
EheI	GGCGCC	1 cut(s)	1051
ErhI	CCWWGG	1 cut(s)	274
FaeI	CATG	3 cut(s)	278, 448, 651
FalI	AAGNNNNNCTT	2 cut(s)	412, 444
FaqI	GGGAC	2 cut(s)	95, 259
FatI	CATG	3 cut(s)	274, 444, 647
FauI	CCCGC	2 cut(s)	228, 886
Fnu4HI	GCNGC	3 cut(s)	44, 240, 818
FokI	GGATG	4 cut(s)	104, 695, 704, 909
FriOI	GRGCYC	2 cut(s)	579, 790
Fsp4HI	GCNGC	3 cut(s)	44, 240, 818
FspBI	CTAG	6 cut(s)	18, 366, 572, 626, 821, 1064
GlaI	GCGC	2 cut(s)	145, 1051
GluI	GCNGC	3 cut(s)	44, 240, 818
GsuI	CTGGAG	3 cut(s)	23, 722, 804
HaeII	RGCGCY	1 cut(s)	1053
HaeIII	GGCC	2 cut(s)	53, 866
HapII	CCGG	2 cut(s)	96, 232
HhaI	GCGC	2 cut(s)	146, 1052
Hin1I	GRCGYC	1 cut(s)	1050
Hin1II	CATG	3 cut(s)	278, 448, 651
Hin6I	GCGC	2 cut(s)	144, 1050
HinP1I	GCGC	2 cut(s)	144, 1050
HincII	GTYRAC	1 cut(s)	960
HindII	GTYRAC	1 cut(s)	960
HindIII	AAGCTT	1 cut(s)	525
HinfI	GANTC	8 cut(s)	62, 84, 99, 416, 463, 735, 742, 1038
HpaII	CCGG	2 cut(s)	96, 232
HphI	GGTGA	2 cut(s)	280, 697
Hpy166II	GTNNAC	4 cut(s)	271, 509, 734, 960
Hpy188I	TCNGA	7 cut(s)	10, 565, 612, 691, 806, 908, 967
Hpy188III	TCNNGA	7 cut(s)	376, 420, 467, 476, 653, 719, 739
Hpy8I	GTNNAC	4 cut(s)	271, 509, 734, 960
HpyAV	CCTTC	8 cut(s)	41, 43, 130, 343, 430, 607, 725, 869
HpyCH4III	ACNGT	2 cut(s)	250, 513
HpyCH4V	TGCA	4 cut(s)	123, 242, 817, 1019
HpyF3I	CTNAG	4 cut(s)	188, 354, 377, 654
Hsp92I	GRCGYC	1 cut(s)	1050
Hsp92II	CATG	3 cut(s)	278, 448, 651
HspAI	GCGC	2 cut(s)	144, 1050
KasI	GGCGCC	1 cut(s)	1049
Kzo9I	GATC	2 cut(s)	139, 469
LmnI	GCTCC	2 cut(s)	778, 785
Lsp1109I	GCAGC	3 cut(s)	55, 226, 829
LweI	GCATC	4 cut(s)	14, 82, 132, 887
MaeI	CTAG	6 cut(s)	18, 366, 572, 626, 821, 1064
MaeIII	GTNAC	1 cut(s)	191
MalI	GATC	2 cut(s)	141, 471
MboI	GATC	2 cut(s)	139, 469
MboII	GAAGA	4 cut(s)	26, 250, 614, 1033
MhlI	GDGCHC	2 cut(s)	579, 790
MlsI	TGGCCA	1 cut(s)	866
MluCI	AATT	6 cut(s)	13, 406, 479, 726, 792, 984
MluNI	TGGCCA	1 cut(s)	866
Mly113I	GGCGCC	1 cut(s)	1050
MlyI	GAGTC	4 cut(s)	78, 425, 729, 1032
MmeI	TCCRAC	1 cut(s)	784
Mox20I	TGGCCA	1 cut(s)	866
MroXI	GAANNNNTTC	1 cut(s)	392
MscI	TGGCCA	1 cut(s)	866
MseI	TTAA	2 cut(s)	293, 494
MslI	CAYNNNNRTG	2 cut(s)	200, 690
Msp20I	TGGCCA	1 cut(s)	866
MspA1I	CMGCKG	1 cut(s)	46
MspI	CCGG	2 cut(s)	96, 232
MspR9I	CCNGG	3 cut(s)	152, 263, 783
MvaI	CCWGG	3 cut(s)	152, 263, 783
MvnI	CGCG	1 cut(s)	144
NarI	GGCGCC	1 cut(s)	1050
NcoI	CCATGG	1 cut(s)	274
NdeII	GATC	2 cut(s)	139, 469
NlaIII	CATG	3 cut(s)	278, 448, 651
NlaIV	GGNNCC	2 cut(s)	156, 1051
NmuCI	GTSAC	1 cut(s)	191
PceI	AGGCCT	1 cut(s)	53
PdmI	GAANNNNTTC	1 cut(s)	392
PfeI	GAWTC	4 cut(s)	62, 99, 463, 742
PflMI	CCANNNNNTGG	1 cut(s)	164
PkrI	GCNGC	3 cut(s)	45, 241, 819
PleI	GAGTC	4 cut(s)	78, 424, 729, 1032
PluTI	GGCGCC	1 cut(s)	1053
PpsI	GAGTC	4 cut(s)	78, 424, 729, 1032
Psp124BI	GAGCTC	1 cut(s)	790
Psp6I	CCWGG	3 cut(s)	150, 261, 781
PspGI	CCWGG	3 cut(s)	150, 261, 781
PspN4I	GGNNCC	2 cut(s)	156, 1051
PspPI	GGNCC	1 cut(s)	878
PstI	CTGCAG	1 cut(s)	244
PstNI	CAGNNNCTG	2 cut(s)	46, 248
PvuII	CAGCTG	1 cut(s)	46
RsaI	GTAC	3 cut(s)	359, 392, 515
RsaNI	GTAC	3 cut(s)	358, 391, 514
RseI	CAYNNNNRTG	2 cut(s)	200, 690
SacI	GAGCTC	1 cut(s)	790
SaqAI	TTAA	2 cut(s)	293, 494
SatI	GCNGC	3 cut(s)	44, 240, 818
Sau3AI	GATC	2 cut(s)	139, 469
Sau96I	GGNCC	1 cut(s)	878
ScaI	AGTACT	2 cut(s)	359, 392
SchI	GAGTC	4 cut(s)	78, 425, 729, 1032
ScrFI	CCNGG	3 cut(s)	152, 263, 783
SduI	GDGCHC	2 cut(s)	579, 790
SfaNI	GCATC	4 cut(s)	14, 82, 132, 887
SfcI	CTRYAG	2 cut(s)	240, 249
SfoI	GGCGCC	1 cut(s)	1051
SinI	GGWCC	1 cut(s)	878
SmiMI	CAYNNNNRTG	2 cut(s)	200, 690
SmlI	CTYRAG	1 cut(s)	474
SmoI	CTYRAG	1 cut(s)	474
Sse9I	AATT	6 cut(s)	13, 406, 479, 726, 792, 984
SseBI	AGGCCT	1 cut(s)	53
SsiI	CCGC	2 cut(s)	235, 893
SspDI	GGCGCC	1 cut(s)	1049
SspI	AATATT	1 cut(s)	1070
SspMI	CTAG	6 cut(s)	18, 366, 572, 626, 821, 1064
SstI	GAGCTC	1 cut(s)	790
StuI	AGGCCT	1 cut(s)	53
StyD4I	CCNGG	3 cut(s)	150, 261, 781
StyI	CCWWGG	1 cut(s)	274
TaaI	ACNGT	2 cut(s)	250, 513
TasI	AATT	6 cut(s)	13, 406, 479, 726, 792, 984
TatI	WGTACW	2 cut(s)	357, 390
TfiI	GAWTC	4 cut(s)	62, 99, 463, 742
Tru1I	TTAA	2 cut(s)	293, 494
Tru9I	TTAA	2 cut(s)	293, 494
TscAI	CASTG	3 cut(s)	196, 492, 1051
TseFI	GTSAC	1 cut(s)	191
TseI	GCWGC	3 cut(s)	43, 239, 817
Tsp45I	GTSAC	1 cut(s)	191
TspDTI	ATGAA	2 cut(s)	829, 957
TspGWI	ACGGA	1 cut(s)	1074
TspRI	CASTG	3 cut(s)	196, 492, 1051
Van91I	CCANNNNNTGG	1 cut(s)	164
VpaK11BI	GGWCC	1 cut(s)	878
XagI	CCTNNNNNAGG	1 cut(s)	338
XmnI	GAANNNNTTC	1 cut(s)	392
XspI	CTAG	6 cut(s)	18, 366, 572, 626, 821, 1064
ZrmI	AGTACT	2 cut(s)	359, 392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.