Rorug01G0262600

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
37251429 .. 37255175
3747 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0262600.1

Sequence Viewer

Length: 1683 bp
ATGGTGGAAGAAAGTGGCAGCGAGGTTTTGTCCAATACCCAGTCAGCCGAAGAATGGTTATCACAAGCAAGGGAGCTTGTTCCATTGGCACTGAATAAGGCAAGAGAGGTTAAGGGGTTTCCAGGTAGATGGAAGATGATCATTTCAAAGTTGGAGCAGATCCCATCACGATTATCAGACTTGTCTAGCCATCCCTGCTTCTCCAAGAATGCTCTTTGTAAGGAGCAATTGCAGTCAGTATCTAAGACATTGAAAGAAGCTATTGAATTGGCAGAGTTTTGTGTGGGGGAGAAGTATGAAGGAAAGCTTCGTATGCAGAGTGATCTTGATTCATTGTCTGGTAAATTGGACTTGAATTTGCGAGATTGTGGCCTTTTGATCAAGACTGGGGTGCTTGGTGAGGCTACTTTGCCTTTGTCTATGGCTAGTTCTTCAACTGAACCTGAGGTTGCTCTACATGGTAATATAAGGGAATTGCTTGCTCGGCTTCAGATTGGGCACTTGGAAGCAAAGCACAAAGCTCTTGACAGTCTTGTTGAGCTCATGAAAGAGGATGAAAAGAATGTGTTGTCGGTTTTGGGGCGTAGCAATATTGCTGCTTTGGTCCAACTGCTCACCGCAACATCTCCTCGTATCCGGGAGAAGACTGTAACTGTTATTTGCTCGCTTGCAGAATCTGGAAGTTGTGAGAATTGGCTTGTTTCTGAAGGTGTCTTGCCACCTCTAATAAGGCTAGTTGAATCTGGGAGTGCTGTTGGGAAAGAAAAGGCTACAATTTCGCTTCAGAGATTGTCAATGTCAGCTGAAGCAGCTAGAGCAATCGTTGGGCACGGTGGGGTTAGACCGCTGATTGAGATTTGTCAGACTGGTGATTCAGTTTCTCAGGCTGCTTCTGCTAGCACTTTGAAGAACATATCAGCTGTCCCCGAGGTTCGACAAACTCTAGATGAGGAAGGAATTGTTAAGGTTATGATCAATCTTCTTGATTGTGGAATGTTATTGGGGTCCAAAGAATATGCAGCCGAGTGTTTGCAGAATCTCACTGCAAGCAATGACAATCTAAGACGGTCTGTAATATCAGAAGGTGGAATTCGGAGCCTACTGGCTTATCTAGCCGGTCCATTGCCACAAGAGTCTGCAGTCGCTGCATTGAGGAACCTGGTTGGCTCGGTTTCTATGGAAGTTTTGGTTTCTCTTGGTCTTCTCCCTTGCTTGGTTCACGTGCTTAAATCTGGTTCACTAGGTGCACAACAAGCAGCTGCATCGGCGATATGCCGAGTTTGCAGCGCAACTGAGATGAAGAAATTGATCGGTGAGGCGGGCTACATTCCTCTTCTTATCAAGATGCTCGAGGCTAAATCAAACAGTGCCAGAGAGGTTGCTGCACAGGCGATATCGAGTTTGATGAGCCTTCCACACAATTGTAGAGAAGTGAAAAGGGACAACAAAAGCGTACCAAATTTGGTCCAATTGCTTGATCCTAGTCCACAAAACACAGCCAAAAAGTATGCAGTTTGTGCCCTCGGCTTAATTTGTTCGAGTAAGAAGTGTAAGAAGCTGATGGTATCCTATGGAGCAATTGGGTACCTCAAGAAGCTTACTGAGATGGACATACCAGGAGCCAAGAAGCTACTTGAGAGGTTGGAAAGAGGAAAGTTGAGAAGTTTCTTCACAAGAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

560

Amino Acids

60.29

Weight (kDa)

8.73

Isoelectric Point (pI)

44.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7032 PF23005 22 - 131 6.9e-40 Domain of unknown function (DUF7032)
ARM_ARMC5 PF24768 266 - 477 1.1e-13 ARMC5
ARM_PUB PF25598 311 - 527 2.5e-06 Plant U-box protein ARM repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1584
AccB1I GGYRCC 1 cut(s) 1584
AciI CCGC 3 cut(s) 618, 845, 1319
AclWI GGATC 2 cut(s) 154, 1472
AcsI RAATTY 3 cut(s) 355, 1089, 1459
AcuI CTGAAG 4 cut(s) 473, 726, 767, 825
AcvI CACGTG 1 cut(s) 1222
AdeI CACNNNGTG 1 cut(s) 1244
AfaI GTAC 2 cut(s) 1455, 1586
AfiI CCNNNNNNNGG 2 cut(s) 54, 1213
AgsI TTSAA 7 cut(s) 147, 253, 266, 355, 435, 740, 907
AjnI CCWGG 3 cut(s) 121, 1158, 1615
Alw21I GWGCWC 2 cut(s) 543, 1249
Alw44I GTGCAC 1 cut(s) 1245
AlwI GGATC 2 cut(s) 154, 1472
AlwNI CAGNNNCTG 2 cut(s) 677, 1145
Ama87I CYCGRG 2 cut(s) 926, 1349
AoxI GGCC 1 cut(s) 370
ApaLI GTGCAC 1 cut(s) 1245
ApoI RAATTY 3 cut(s) 355, 1089, 1459
Asp718I GGTACC 1 cut(s) 1584
AspLEI GCGC 1 cut(s) 1289
AspS9I GGNCC 4 cut(s) 604, 1005, 1118, 1465
AsuC2I CCSGG 1 cut(s) 638
AsuHPI GGTGA 4 cut(s) 410, 607, 881, 1325
AsuNHI GCTAGC 1 cut(s) 896
AvaI CYCGRG 2 cut(s) 926, 1349
AvaII GGWCC 4 cut(s) 604, 1005, 1118, 1465
AxyI CCTNAGG 1 cut(s) 444
BaeGI GKGCMC 4 cut(s) 501, 831, 1249, 1522
BanI GGYRCC 1 cut(s) 1584
BanII GRGCYC 1 cut(s) 543
BbrPI CACGTG 1 cut(s) 1222
BbsI GAAGAC 2 cut(s) 650, 1193
Bbv12I GWGCWC 2 cut(s) 543, 1249
BccI CCATC 5 cut(s) 123, 172, 198, 1555, 1600
BcgI CGANNNNNNTGC 2 cut(s) 1245, 1279
BciT130I CCWGG 3 cut(s) 123, 1160, 1617
BciVI GTATCC 2 cut(s) 644, 1576
BclI TGATCA 3 cut(s) 138, 378, 972
BcnI CCSGG 1 cut(s) 638
BfaI CTAG 9 cut(s) 186, 426, 734, 813, 897, 944, 1112, 1241, 1482
BfmI CTRYAG 1 cut(s) 1137
BfuI GTATCC 2 cut(s) 644, 1576
Bme1390I CCNGG 4 cut(s) 123, 638, 1160, 1617
Bme18I GGWCC 4 cut(s) 604, 1005, 1118, 1465
BmeT110I CYCGRG 2 cut(s) 926, 1349
BmgT120I GGNCC 4 cut(s) 604, 1005, 1118, 1465
BmiI GGNNCC 5 cut(s) 1006, 1097, 1157, 1586, 1621
BmrFI CCNGG 4 cut(s) 123, 638, 1160, 1617
BmrI ACTGGG 2 cut(s) 34, 396
BmsI GCATC 2 cut(s) 1271, 1335
BmtI GCTAGC 1 cut(s) 900
BmuI ACTGGG 2 cut(s) 34, 396
BpiI GAAGAC 2 cut(s) 650, 1193
BpuEI CTTGAG 2 cut(s) 1574, 1655
BpuMI CCSGG 1 cut(s) 638
BsaAI YACGTR 1 cut(s) 1222
BsaJI CCNNGG 2 cut(s) 927, 1522
Bsc4I CCNNNNNNNGG 2 cut(s) 54, 1213
Bse118I RCCGGY 1 cut(s) 1115
Bse1I ACTGG 4 cut(s) 40, 391, 871, 1107
Bse21I CCTNAGG 1 cut(s) 444
Bse3DI GCAATG 2 cut(s) 1057, 1121
BseBI CCWGG 3 cut(s) 123, 1160, 1617
BseDI CCNNGG 2 cut(s) 927, 1522
BseGI GGATG 2 cut(s) 190, 559
BseLI CCNNNNNNNGG 2 cut(s) 54, 1213
BseMI GCAATG 2 cut(s) 1057, 1121
BseMII CTCAG 4 cut(s) 435, 896, 1284, 1593
BseNI ACTGG 4 cut(s) 40, 391, 871, 1107
BseRI GAGGAG 1 cut(s) 618
BseSI GKGCMC 4 cut(s) 501, 831, 1249, 1522
BsgI GTGCAG 1 cut(s) 1368
BshFI GGCC 1 cut(s) 372
BshNI GGYRCC 1 cut(s) 1584
BsiHKAI GWGCWC 2 cut(s) 543, 1249
BsiHKCI CYCGRG 2 cut(s) 926, 1349
BsiSI CCGG 2 cut(s) 637, 1116
BslFI GGGAC 2 cut(s) 908, 1454
BslI CCNNNNNNNGG 2 cut(s) 54, 1213
BsmFI GGGAC 2 cut(s) 908, 1454
BsmI GAATGC 1 cut(s) 214
BsnI GGCC 1 cut(s) 372
BsoBI CYCGRG 2 cut(s) 926, 1349
Bsp1286I GDGCHC 5 cut(s) 501, 543, 831, 1249, 1522
Bsp143I GATC 7 cut(s) 138, 159, 322, 378, 972, 1308, 1477
BspACI CCGC 3 cut(s) 618, 845, 1319
BspANI GGCC 1 cut(s) 372
BspCNI CTCAG 4 cut(s) 436, 895, 1285, 1594
BspHI TCATGA 1 cut(s) 543
BspLI GGNNCC 5 cut(s) 1006, 1097, 1157, 1586, 1621
BspMAI CTGCAG 1 cut(s) 1141
BspOI GCTAGC 1 cut(s) 900
BspPI GGATC 2 cut(s) 154, 1472
BspT107I GGYRCC 1 cut(s) 1584
BsrDI GCAATG 2 cut(s) 1057, 1121
BsrFI RCCGGY 1 cut(s) 1115
BsrI ACTGG 4 cut(s) 40, 391, 871, 1107
BssAI RCCGGY 1 cut(s) 1115
BssECI CCNNGG 2 cut(s) 927, 1522
BssMI GATC 7 cut(s) 138, 159, 322, 378, 972, 1308, 1477
Bst2UI CCWGG 3 cut(s) 123, 1160, 1617
Bst4CI ACNGT 6 cut(s) 530, 649, 655, 833, 1068, 1367
Bst6I CTCTTC 1 cut(s) 1338
BstAPI GCANNNNNTGC 2 cut(s) 1145, 1517
BstBAI YACGTR 1 cut(s) 1222
BstC8I GCNNGC 6 cut(s) 480, 665, 669, 898, 1048, 1321
BstDEI CTNAG 6 cut(s) 243, 444, 882, 1061, 1293, 1602
BstF5I GGATG 2 cut(s) 190, 559
BstHHI GCGC 1 cut(s) 1289
BstKTI GATC 7 cut(s) 141, 162, 325, 381, 975, 1311, 1480
BstMBI GATC 7 cut(s) 138, 159, 322, 378, 972, 1308, 1477
BstNI CCWGG 3 cut(s) 123, 1160, 1617
BstSCI CCNGG 4 cut(s) 121, 636, 1158, 1615
BstSFI CTRYAG 1 cut(s) 1137
BstSLI GKGCMC 4 cut(s) 501, 831, 1249, 1522
BstV2I GAAGAC 2 cut(s) 650, 1193
BstX2I RGATCY 1 cut(s) 159
BstXI CCANNNNNNTGG 1 cut(s) 129
BstYI RGATCY 1 cut(s) 159
Bsu36I CCTNAGG 1 cut(s) 444
BsuI GTATCC 2 cut(s) 644, 1576
BsuRI GGCC 1 cut(s) 372
BtsCI GGATG 2 cut(s) 190, 559
BtsI GCAGTG 1 cut(s) 1041
BtsIMutI CAGTG 3 cut(s) 89, 1041, 1372
Cac8I GCNNGC 6 cut(s) 480, 665, 669, 898, 1048, 1321
CaiI CAGNNNCTG 2 cut(s) 677, 1145
CciI TCATGA 1 cut(s) 543
CfoI GCGC 1 cut(s) 1289
Cfr10I RCCGGY 1 cut(s) 1115
Cfr13I GGNCC 4 cut(s) 604, 1005, 1118, 1465
CsiI ACCWGGT 1 cut(s) 1158
Csp6I GTAC 2 cut(s) 1454, 1585
CviAII CATG 2 cut(s) 458, 544
CviQI GTAC 2 cut(s) 1454, 1585
DdeI CTNAG 6 cut(s) 243, 444, 882, 1061, 1293, 1602
DpnI GATC 7 cut(s) 140, 161, 324, 380, 974, 1310, 1479
DpnII GATC 7 cut(s) 138, 159, 322, 378, 972, 1308, 1477
DraIII CACNNNGTG 1 cut(s) 1244
Eam1104I CTCTTC 1 cut(s) 1338
EarI CTCTTC 1 cut(s) 1338
Ecl136II GAGCTC 1 cut(s) 541
Eco24I GRGCYC 1 cut(s) 543
Eco32I GATATC 1 cut(s) 1395
Eco47I GGWCC 4 cut(s) 604, 1005, 1118, 1465
Eco53kI GAGCTC 1 cut(s) 541
Eco57I CTGAAG 4 cut(s) 473, 726, 767, 825
Eco72I CACGTG 1 cut(s) 1222
Eco81I CCTNAGG 1 cut(s) 444
Eco88I CYCGRG 2 cut(s) 926, 1349
EcoICRI GAGCTC 1 cut(s) 541
EcoRI GAATTC 1 cut(s) 1089
EcoRII CCWGG 3 cut(s) 121, 1158, 1615
EcoRV GATATC 1 cut(s) 1395
EcoT38I GRGCYC 1 cut(s) 543
FaeI CATG 2 cut(s) 461, 547
FalI AAGNNNNNCTT 2 cut(s) 291, 323
FaqI GGGAC 2 cut(s) 908, 1454
FatI CATG 2 cut(s) 457, 543
FauI CCCGC 1 cut(s) 1312
FbaI TGATCA 3 cut(s) 138, 378, 972
FokI GGATG 2 cut(s) 177, 566
FriOI GRGCYC 1 cut(s) 543
FspBI CTAG 9 cut(s) 186, 426, 734, 813, 897, 944, 1112, 1241, 1482
GlaI GCGC 1 cut(s) 1288
HaeIII GGCC 1 cut(s) 372
HapII CCGG 2 cut(s) 637, 1116
HhaI GCGC 1 cut(s) 1289
Hin1II CATG 2 cut(s) 461, 547
Hin6I GCGC 1 cut(s) 1287
HinP1I GCGC 1 cut(s) 1287
HindIII AAGCTT 2 cut(s) 305, 1595
HinfI GANTC 6 cut(s) 329, 674, 740, 872, 1036, 1133
HpaII CCGG 2 cut(s) 637, 1116
HphI GGTGA 4 cut(s) 410, 607, 881, 1325
Hpy166II GTNNAC 4 cut(s) 1219, 1238, 1247, 1487
Hpy188I TCNGA 7 cut(s) 178, 492, 706, 786, 864, 1081, 1095
Hpy8I GTNNAC 4 cut(s) 1219, 1238, 1247, 1487
HpyAV CCTTC 5 cut(s) 293, 701, 947, 1076, 1421
HpyCH4III ACNGT 6 cut(s) 530, 649, 655, 833, 1068, 1367
HpyCH4IV ACGT 1 cut(s) 1221
HpyF3I CTNAG 6 cut(s) 243, 444, 882, 1061, 1293, 1602
HpySE526I ACGT 1 cut(s) 1221
Hsp92II CATG 2 cut(s) 461, 547
HspAI GCGC 1 cut(s) 1287
KpnI GGTACC 1 cut(s) 1588
Ksp22I TGATCA 3 cut(s) 138, 378, 972
Kzo9I GATC 7 cut(s) 138, 159, 322, 378, 972, 1308, 1477
LmnI GCTCC 6 cut(s) 73, 154, 223, 1095, 1574, 1619
LweI GCATC 2 cut(s) 1271, 1335
MabI ACCWGGT 1 cut(s) 1158
MaeI CTAG 9 cut(s) 186, 426, 734, 813, 897, 944, 1112, 1241, 1482
MaeII ACGT 1 cut(s) 1221
MaeIII GTNAC 1 cut(s) 649
MalI GATC 7 cut(s) 140, 161, 324, 380, 974, 1310, 1479
MboI GATC 7 cut(s) 138, 159, 322, 378, 972, 1308, 1477
MfeI CAATTG 4 cut(s) 227, 1420, 1469, 1578
MflI RGATCY 1 cut(s) 159
MhlI GDGCHC 5 cut(s) 501, 543, 831, 1249, 1522
MlyI GAGTC 1 cut(s) 1142
MmeI TCCRAC 3 cut(s) 132, 631, 1623
MseI TTAA 4 cut(s) 111, 963, 1227, 1529
MspA1I CMGCKG 4 cut(s) 803, 847, 920, 1259
MspI CCGG 2 cut(s) 637, 1116
MspR9I CCNGG 4 cut(s) 123, 638, 1160, 1617
MunI CAATTG 4 cut(s) 227, 1420, 1469, 1578
Mva1269I GAATGC 1 cut(s) 214
MvaI CCWGG 3 cut(s) 123, 1160, 1617
NciI CCSGG 1 cut(s) 638
NdeII GATC 7 cut(s) 138, 159, 322, 378, 972, 1308, 1477
NheI GCTAGC 1 cut(s) 896
NlaIII CATG 2 cut(s) 461, 547
NlaIV GGNNCC 5 cut(s) 1006, 1097, 1157, 1586, 1621
NmeAIII GCCGAG 4 cut(s) 463, 1048, 1301, 1503
PaeR7I CTCGAG 1 cut(s) 1349
PagI TCATGA 1 cut(s) 543
PctI GAATGC 1 cut(s) 214
PfeI GAWTC 5 cut(s) 329, 674, 740, 872, 1036
PfoI TCCNGGA 1 cut(s) 636
PleI GAGTC 1 cut(s) 1141
PmaCI CACGTG 1 cut(s) 1222
PmlI CACGTG 1 cut(s) 1222
PpsI GAGTC 1 cut(s) 1141
Ppu21I YACGTR 1 cut(s) 1222
Psp124BI GAGCTC 1 cut(s) 543
Psp6I CCWGG 3 cut(s) 121, 1158, 1615
PspCI CACGTG 1 cut(s) 1222
PspGI CCWGG 3 cut(s) 121, 1158, 1615
PspN4I GGNNCC 5 cut(s) 1006, 1097, 1157, 1586, 1621
PspPI GGNCC 4 cut(s) 604, 1005, 1118, 1465
PspXI VCTCGAGB 1 cut(s) 1349
PstI CTGCAG 1 cut(s) 1141
PstNI CAGNNNCTG 2 cut(s) 677, 1145
PsuI RGATCY 1 cut(s) 159
PvuII CAGCTG 3 cut(s) 803, 920, 1259
RsaI GTAC 2 cut(s) 1455, 1586
RsaNI GTAC 2 cut(s) 1454, 1585
SacI GAGCTC 1 cut(s) 543
SaqAI TTAA 4 cut(s) 111, 963, 1227, 1529
Sau3AI GATC 7 cut(s) 138, 159, 322, 378, 972, 1308, 1477
Sau96I GGNCC 4 cut(s) 604, 1005, 1118, 1465
SchI GAGTC 1 cut(s) 1142
ScrFI CCNGG 4 cut(s) 123, 638, 1160, 1617
SduI GDGCHC 5 cut(s) 501, 543, 831, 1249, 1522
SexAI ACCWGGT 1 cut(s) 1158
SfaNI GCATC 2 cut(s) 1271, 1335
SfcI CTRYAG 1 cut(s) 1137
Sfr274I CTCGAG 1 cut(s) 1349
SinI GGWCC 4 cut(s) 604, 1005, 1118, 1465
SlaI CTCGAG 1 cut(s) 1349
SmlI CTYRAG 3 cut(s) 1349, 1589, 1634
SmoI CTYRAG 3 cut(s) 1349, 1589, 1634
SsiI CCGC 3 cut(s) 618, 845, 1319
SspI AATATT 1 cut(s) 592
SspMI CTAG 9 cut(s) 186, 426, 734, 813, 897, 944, 1112, 1241, 1482
SstI GAGCTC 1 cut(s) 543
StyD4I CCNGG 4 cut(s) 121, 636, 1158, 1615
TaaI ACNGT 6 cut(s) 530, 649, 655, 833, 1068, 1367
TaiI ACGT 1 cut(s) 1224
TaqI TCGA 4 cut(s) 934, 1350, 1397, 1538
TfiI GAWTC 5 cut(s) 329, 674, 740, 872, 1036
Tru1I TTAA 4 cut(s) 111, 963, 1227, 1529
Tru9I TTAA 4 cut(s) 111, 963, 1227, 1529
TscAI CASTG 3 cut(s) 96, 1048, 1372
TspDTI ATGAA 5 cut(s) 312, 321, 560, 570, 1313
TspRI CASTG 3 cut(s) 96, 1048, 1372
VneI GTGCAC 1 cut(s) 1245
VpaK11BI GGWCC 4 cut(s) 604, 1005, 1118, 1465
XapI RAATTY 3 cut(s) 355, 1089, 1459
XbaI TCTAGA 1 cut(s) 943
XhoI CTCGAG 1 cut(s) 1349
XspI CTAG 9 cut(s) 186, 426, 734, 813, 897, 944, 1112, 1241, 1482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.