Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001604

Physical Location & Seq

Genomic Coordinates Reverse (-)

63168787 .. 63171852

Gene Structure 3066 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG425500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGGTTCCATGACACTTCCCAAAGAGCTTCCCATCATCAATTTCTCCCTCTTGAAGCCTGGCACAAGCTCCTGGGCTTCCACCTGCAAACAAGTCCGCTGTGCACTCGAAGAATATGGTTGCTTTGTGGCACTGTACCAACAAGTTTCCCCACAGCTCATGGACAATATCTTTGGCCAATCCAGGGATTTGTTCGAGGTTCCCCTTGAAAACAAAGTCAGGAACACCAGTGAGGAGCCTTACCGTGGCTATATCGGACCAAACCAGCTCATGCCGCTCTATGAAAGCGTGGCCATTGACAACGTTACATCCCCACAAGAAACTCAGAAGTTCAGGGACCTCATGTGGCCTTATGGAAAGACCAACTTTTGTGAAATCACAGATCTGTTTGCCAAGTTGGTTGGGGACCTAGAAAACACTGTGGGAAAGATGATATTCGAAAGCTTCGGGATTCCTCAAGAGCAATATGAATCGTTGGCGAGTTCAAACAGTCATCTTCTTCGTTTTCTCAAGTATAGGACACCAGAAGAGAGCGACACTGTCATAAGGTTTCCGAGCCTCACAGACAAGAACTTCACCAGCATTGTTGTTCAGCATGATGTCGGTGGCCTCGAGGTTCAGACTAAGGATGGCGATTGGATTAGTGTCGAGTCTGCACCTTCTCTCTTCTTGGCTGCTGATGGACTTCAGGTATGGAGTAATGACAGAATGAAAGCTTGCCAGCATCGAGTAAAGAACTGCGGGGACAAGACTCGATACTCGTTGGGAATGTTTACGTTTAACAATGGAGTATTCCAAGTACCCAAAGAGCTAGTAGACGACAGTCACCCACTTCTCTACAACCAGTTCGACGGTCGTGGCTTCATTAGATTTTACACCACAAAGGAGGCCAAGAAGGCAAAGTCACCCATCAAAGCCTATTGCGGCATTAAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

312

Amino Acids

35.42

Weight (kDa)

5.91

Isoelectric Point (pI)

30.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	10 - 87	1.1e-13	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	170 - 259	4.1e-15	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001604)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28210 FvH4_6g42700 FvH4_7g15780
malus_domestica	MD03G1085000.v1.1 MD05G1208700.v1.1 MD10G1195200.v1.1 MD11G1092600.v1.1
prunus_persica	Prupe.4G262900_v2.0.a1 Prupe.4G263000_v2.0.a1 Prupe.4G263100_v2.0.a1 Prupe.4G264400_v2.0.a1
pyrus_communis	pycom03g06720 pycom05g19460 pycom10g16890 pycom11g07800 pycom11g07820
rosa_chinensis	RchiOBHm_Chr1g0358581 RchiOBHm_Chr4g0395841 RchiOBHm_Chr4g0444921 RchiOBHm_Chr5g0050321 RchiOBHm_Chr5g0050341
rosa_laevigata	RLG00000027944 RLG00000034696 RLG00000034697 RLG00000034698
rosa_multiflora	Rmu_sc0001103.1_g000025 Rmu_sc0001609.1_g000014 Rmu_sc0005060.1_g000004 Rmu_sc0005060.1_g000006
rosa_roxburghii	Rroxscaffold_1G00027250 Rroxscaffold_1G00030670 Rroxscaffold_1G00030700 Rroxscaffold_4G00297680 Rroxscaffold_4G00297780
rosa_rugosa	Rorug01G0262600 Rorug01G0262700 Rorug05G0260000 Rorug05G0260000 Rorug05G0260100
rosa_samantha	Rh1BG243900 Rh1CG260900 Rh4BG429600 Rh4DG425500 Rh5AG331700 Rh5AG331800 Rh5CG369400 Rh5CG369500
rosa_wichuraiana	Rw1G024650 Rw5G031370 Rw5G031380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	92
AbsI	CCTCGAGG	1 cut(s)	611
Acc36I	ACCTGC	1 cut(s)	92
AccBSI	CCGCTC	1 cut(s)	277
AccI	GTMKAC	1 cut(s)	816
AciI	CCGC	4 cut(s)	97, 275, 741, 924
AclI	AACGTT	1 cut(s)	303
AcoI	YGGCCR	2 cut(s)	175, 291
AcuI	CTGAAG	1 cut(s)	671
AfaI	GTAC	2 cut(s)	137, 801
AfiI	CCNNNNNNNGG	2 cut(s)	184, 245
AgsI	TTSAA	3 cut(s)	55, 209, 486
AjnI	CCWGG	3 cut(s)	58, 71, 182
AluBI	AGCT	7 cut(s)	28, 69, 157, 268, 444, 716, 811
AluI	AGCT	7 cut(s)	28, 69, 157, 268, 444, 716, 811
Alw21I	GWGCWC	1 cut(s)	106
Alw44I	GTGCAC	1 cut(s)	102
Ama87I	CYCGRG	1 cut(s)	611
AoxI	GGCC	5 cut(s)	175, 291, 347, 607, 888
ApaLI	GTGCAC	1 cut(s)	102
ApeKI	GCWGC	1 cut(s)	674
ArsI	GACNNNNNNTTYG	2 cut(s)	155, 187
AspS9I	GGNCC	3 cut(s)	257, 337, 406
AsuHPI	GGTGA	3 cut(s)	568, 818, 897
AsuII	TTCGAA	1 cut(s)	438
AvaI	CYCGRG	1 cut(s)	611
AvaII	GGWCC	3 cut(s)	257, 337, 406
BaeGI	GKGCMC	1 cut(s)	106
BalI	TGGCCA	2 cut(s)	177, 293
Bbv12I	GWGCWC	1 cut(s)	106
BbvI	GCAGC	1 cut(s)	661
BccI	CCATC	4 cut(s)	41, 623, 674, 917
BciT130I	CCWGG	3 cut(s)	60, 73, 184
BfaI	CTAG	3 cut(s)	410, 812, 937
BfuAI	ACCTGC	1 cut(s)	92
BglI	GCCNNNNNGGC	1 cut(s)	896
BglII	AGATCT	1 cut(s)	382
BisI	GCNGC	3 cut(s)	275, 675, 925
BlsI	GCNGC	3 cut(s)	276, 676, 926
Bme1390I	CCNGG	3 cut(s)	60, 73, 184
Bme18I	GGWCC	3 cut(s)	257, 337, 406
BmeT110I	CYCGRG	1 cut(s)	611
BmgT120I	GGNCC	3 cut(s)	257, 337, 406
BmiI	GGNNCC	5 cut(s)	7, 201, 237, 338, 407
BmrFI	CCNGG	3 cut(s)	60, 73, 184
BmsI	GCATC	1 cut(s)	733
BoxI	GACNNNNGTC	1 cut(s)	822
Bpu14I	TTCGAA	1 cut(s)	438
BpuEI	CTTGAG	2 cut(s)	441, 494
BsaJI	CCNNGG	3 cut(s)	72, 183, 244
Bsc4I	CCNNNNNNNGG	2 cut(s)	184, 245
Bse1I	ACTGG	2 cut(s)	228, 844
BseBI	CCWGG	3 cut(s)	60, 73, 184
BseDI	CCNNGG	3 cut(s)	72, 183, 244
BseGI	GGATG	2 cut(s)	308, 634
BseLI	CCNNNNNNNGG	2 cut(s)	184, 245
BseMII	CTCAG	1 cut(s)	338
BseNI	ACTGG	2 cut(s)	228, 844
BseRI	GAGGAG	1 cut(s)	248
BseSI	GKGCMC	1 cut(s)	106
BseXI	GCAGC	1 cut(s)	661
BsgI	GTGCAG	1 cut(s)	639
Bsh1285I	CGRYCG	1 cut(s)	856
BshFI	GGCC	5 cut(s)	177, 293, 349, 609, 890
BsiEI	CGRYCG	1 cut(s)	856
BsiHKAI	GWGCWC	1 cut(s)	106
BsiHKCI	CYCGRG	1 cut(s)	611
BslFI	GGGAC	3 cut(s)	350, 419, 758
BslI	CCNNNNNNNGG	2 cut(s)	184, 245
BsmFI	GGGAC	3 cut(s)	350, 419, 758
BsnI	GGCC	5 cut(s)	177, 293, 349, 609, 890
BsoBI	CYCGRG	1 cut(s)	611
Bsp119I	TTCGAA	1 cut(s)	438
Bsp1286I	GDGCHC	1 cut(s)	106
Bsp143I	GATC	1 cut(s)	382
BspACI	CCGC	4 cut(s)	97, 275, 741, 924
BspANI	GGCC	5 cut(s)	177, 293, 349, 609, 890
BspCNI	CTCAG	1 cut(s)	337
BspLI	GGNNCC	5 cut(s)	7, 201, 237, 338, 407
BspMI	ACCTGC	1 cut(s)	92
BspT104I	TTCGAA	1 cut(s)	438
BsrBI	CCGCTC	1 cut(s)	277
BsrI	ACTGG	2 cut(s)	228, 844
BssECI	CCNNGG	3 cut(s)	72, 183, 244
BssMI	GATC	1 cut(s)	382
Bst2UI	CCWGG	3 cut(s)	60, 73, 184
Bst4CI	ACNGT	7 cut(s)	135, 245, 421, 491, 541, 824, 854
Bst6I	CTCTTC	2 cut(s)	522, 671
BstBI	TTCGAA	1 cut(s)	438
BstC8I	GCNNGC	2 cut(s)	718, 722
BstDEI	CTNAG	2 cut(s)	324, 624
BstDSI	CCRYGG	1 cut(s)	244
BstF5I	GGATG	2 cut(s)	308, 634
BstKTI	GATC	1 cut(s)	385
BstMBI	GATC	1 cut(s)	382
BstMCI	CGRYCG	1 cut(s)	856
BstMWI	GCNNNNNNNGC	2 cut(s)	274, 896
BstNI	CCWGG	3 cut(s)	60, 73, 184
BstPAI	GACNNNNGTC	1 cut(s)	822
BstSCI	CCNGG	3 cut(s)	58, 71, 182
BstSLI	GKGCMC	1 cut(s)	106
BstV1I	GCAGC	1 cut(s)	661
BstX2I	RGATCY	1 cut(s)	382
BstYI	RGATCY	1 cut(s)	382
BsuRI	GGCC	5 cut(s)	177, 293, 349, 609, 890
BtgI	CCRYGG	1 cut(s)	244
BtsCI	GGATG	2 cut(s)	308, 634
BtsIMutI	CAGTG	4 cut(s)	131, 235, 417, 537
BveI	ACCTGC	1 cut(s)	92
Cac8I	GCNNGC	2 cut(s)	718, 722
Cfr13I	GGNCC	3 cut(s)	257, 337, 406
Csp6I	GTAC	2 cut(s)	136, 800
CviAII	CATG	5 cut(s)	10, 160, 271, 343, 596
CviQI	GTAC	2 cut(s)	136, 800
DdeI	CTNAG	2 cut(s)	324, 624
DpnI	GATC	1 cut(s)	384
DpnII	GATC	1 cut(s)	382
EaeI	YGGCCR	2 cut(s)	175, 291
Eam1104I	CTCTTC	2 cut(s)	522, 671
EarI	CTCTTC	2 cut(s)	522, 671
Eco47I	GGWCC	3 cut(s)	257, 337, 406
Eco57I	CTGAAG	1 cut(s)	671
Eco88I	CYCGRG	1 cut(s)	611
EcoO109I	RGGNCCY	2 cut(s)	337, 406
EcoRII	CCWGG	3 cut(s)	58, 71, 182
FaeI	CATG	5 cut(s)	13, 163, 274, 346, 599
FalI	AAGNNNNNCTT	2 cut(s)	350, 382
FaqI	GGGAC	3 cut(s)	350, 419, 758
FatI	CATG	5 cut(s)	9, 159, 270, 342, 595
FauI	CCCGC	1 cut(s)	734
FblI	GTMKAC	1 cut(s)	816
Fnu4HI	GCNGC	3 cut(s)	275, 675, 925
FokI	GGATG	2 cut(s)	295, 641
Fsp4HI	GCNGC	3 cut(s)	275, 675, 925
FspBI	CTAG	3 cut(s)	410, 812, 937
GluI	GCNGC	3 cut(s)	275, 675, 925
HaeIII	GGCC	5 cut(s)	177, 293, 349, 609, 890
Hin1II	CATG	5 cut(s)	13, 163, 274, 346, 599
HindIII	AAGCTT	2 cut(s)	442, 714
HinfI	GANTC	4 cut(s)	451, 470, 650, 751
HphI	GGTGA	3 cut(s)	568, 818, 897
Hpy166II	GTNNAC	3 cut(s)	104, 774, 817
Hpy188I	TCNGA	4 cut(s)	257, 327, 555, 621
Hpy188III	TCNNGA	4 cut(s)	52, 220, 448, 458
Hpy8I	GTNNAC	3 cut(s)	104, 774, 817
Hpy99I	CGWCG	1 cut(s)	854
HpyAV	CCTTC	2 cut(s)	669, 889
HpyCH4III	ACNGT	7 cut(s)	135, 245, 421, 491, 541, 824, 854
HpyCH4IV	ACGT	2 cut(s)	303, 776
HpyCH4V	TGCA	3 cut(s)	87, 104, 656
HpyF10VI	GCNNNNNNNGC	2 cut(s)	274, 896
HpyF3I	CTNAG	2 cut(s)	324, 624
HpySE526I	ACGT	2 cut(s)	303, 776
Hsp92II	CATG	5 cut(s)	13, 163, 274, 346, 599
Kzo9I	GATC	1 cut(s)	382
LmnI	GCTCC	2 cut(s)	74, 235
Lsp1109I	GCAGC	1 cut(s)	661
LweI	GCATC	1 cut(s)	733
MaeI	CTAG	3 cut(s)	410, 812, 937
MaeII	ACGT	2 cut(s)	303, 776
MaeIII	GTNAC	3 cut(s)	304, 824, 903
MalI	GATC	1 cut(s)	384
MbiI	CCGCTC	1 cut(s)	277
MboI	GATC	1 cut(s)	382
MboII	GAAGA	5 cut(s)	122, 488, 491, 539, 658
MflI	RGATCY	1 cut(s)	382
MhlI	GDGCHC	1 cut(s)	106
MlsI	TGGCCA	2 cut(s)	177, 293
MluCI	AATT	1 cut(s)	40
MluNI	TGGCCA	2 cut(s)	177, 293
MlyI	GAGTC	2 cut(s)	659, 745
MnlI	CCTC	9 cut(s)	59, 190, 226, 350, 465, 569, 607, 620, 880
Mox20I	TGGCCA	2 cut(s)	177, 293
MscI	TGGCCA	2 cut(s)	177, 293
MseI	TTAA	2 cut(s)	780, 930
Msp20I	TGGCCA	2 cut(s)	177, 293
MspA1I	CMGCKG	1 cut(s)	99
MspR9I	CCNGG	3 cut(s)	60, 73, 184
MvaI	CCWGG	3 cut(s)	60, 73, 184
MwoI	GCNNNNNNNGC	2 cut(s)	274, 896
NdeII	GATC	1 cut(s)	382
NlaIII	CATG	5 cut(s)	13, 163, 274, 346, 599
NlaIV	GGNNCC	5 cut(s)	7, 201, 237, 338, 407
NmuCI	GTSAC	2 cut(s)	824, 903
NspV	TTCGAA	1 cut(s)	438
PaeR7I	CTCGAG	1 cut(s)	611
PaqCI	CACCTGC	1 cut(s)	92
PcsI	WCGNNNNNNNCGW	1 cut(s)	609
PfeI	GAWTC	2 cut(s)	451, 470
PflFI	GACNNNGTC	1 cut(s)	539
PkrI	GCNGC	3 cut(s)	276, 676, 926
PleI	GAGTC	2 cut(s)	658, 745
PpsI	GAGTC	2 cut(s)	658, 745
PpuMI	RGGWCCY	2 cut(s)	337, 406
PshAI	GACNNNNGTC	1 cut(s)	822
Psp1406I	AACGTT	1 cut(s)	303
Psp5II	RGGWCCY	2 cut(s)	337, 406
Psp6I	CCWGG	3 cut(s)	58, 71, 182
PspGI	CCWGG	3 cut(s)	58, 71, 182
PspN4I	GGNNCC	5 cut(s)	7, 201, 237, 338, 407
PspPI	GGNCC	3 cut(s)	257, 337, 406
PspPPI	RGGWCCY	2 cut(s)	337, 406
PspXI	VCTCGAGB	1 cut(s)	611
PsuI	RGATCY	1 cut(s)	382
PsyI	GACNNNGTC	1 cut(s)	539
RsaI	GTAC	2 cut(s)	137, 801
RsaNI	GTAC	2 cut(s)	136, 800
SaqAI	TTAA	2 cut(s)	780, 930
SatI	GCNGC	3 cut(s)	275, 675, 925
Sau3AI	GATC	1 cut(s)	382
Sau96I	GGNCC	3 cut(s)	257, 337, 406
SchI	GAGTC	2 cut(s)	659, 745
ScrFI	CCNGG	3 cut(s)	60, 73, 184
SduI	GDGCHC	1 cut(s)	106
SfaNI	GCATC	1 cut(s)	733
Sfr274I	CTCGAG	1 cut(s)	611
SfuI	TTCGAA	1 cut(s)	438
SinI	GGWCC	3 cut(s)	257, 337, 406
SlaI	CTCGAG	1 cut(s)	611
SmlI	CTYRAG	3 cut(s)	456, 509, 611
SmoI	CTYRAG	3 cut(s)	456, 509, 611
Sse9I	AATT	1 cut(s)	40
SsiI	CCGC	4 cut(s)	97, 275, 741, 924
SspMI	CTAG	3 cut(s)	410, 812, 937
StyD4I	CCNGG	3 cut(s)	58, 71, 182
TaaI	ACNGT	7 cut(s)	135, 245, 421, 491, 541, 824, 854
TaiI	ACGT	2 cut(s)	306, 779
TaqI	TCGA	8 cut(s)	108, 195, 438, 612, 648, 727, 754, 849
TasI	AATT	1 cut(s)	40
TauI	GCSGC	2 cut(s)	277, 927
TfiI	GAWTC	2 cut(s)	451, 470
Tru1I	TTAA	2 cut(s)	780, 930
Tru9I	TTAA	2 cut(s)	780, 930
TscAI	CASTG	4 cut(s)	138, 235, 424, 544
TseFI	GTSAC	2 cut(s)	824, 903
TseI	GCWGC	1 cut(s)	674
Tsp45I	GTSAC	2 cut(s)	824, 903
TspDTI	ATGAA	4 cut(s)	297, 483, 725, 853
TspRI	CASTG	4 cut(s)	138, 235, 424, 544
Tth111I	GACNNNGTC	1 cut(s)	539
VneI	GTGCAC	1 cut(s)	102
VpaK11BI	GGWCC	3 cut(s)	257, 337, 406
XhoI	CTCGAG	1 cut(s)	611
XmiI	GTMKAC	1 cut(s)	816
XspI	CTAG	3 cut(s)	410, 812, 937

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.