Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001604

Physical Location & Seq

Genomic Coordinates Reverse (-)

51023028 .. 51025521

Gene Structure 2494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G024650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGACAATATCTTTGGCCAATCCAGGGATTTGTTCGACGTTCCCCTCGAAAACAAAGTCAAGAACACCAGCGAGGAGCCTTTCCGTGGCTATATCGGACCAAACCCGCTCATGCCGCTCTATGAAGGCATGGCCATTGACAACGTCACATCCCCACAAGAAACTCAAAAGTTCAGGGACCTCATGTGGCCTAATGGAAAGACCAAATTCTGTGAAATCACAGATCTGTTTGCCAAGTTGCTCGGGGACTTGGAAAACACAGTGGAAAAAATGATGTTCGAAAGCTTTGGGGTACCCCAAGAGCAATATGAATCGTTGGCGAGTTCAAACAGTCATCTTCTTCGTTTTCTCAAGTACAGGACACCAGAAGAGAGCGACACAGTCATAAGGTTTCCGAGCCACACAGACAAGAACTTCACTACCATTGTTGTTCAGCATGATGTCGGTGGCCTCGAGGTTCAGACTAAGGATGGTGATTGGATTAGTGTCGAGTCTGCACCTTCTCAGTTCCTCTTCATGGCTGGTGATGGACTTCAGGTATGGAGCAATGACAGAGTGAAAGCTTGCCACCATCGAGTGAAGCACTGCGGGGACAAGACTCGCTACTCACTGGGAATGTTTACGTTTAACAATGGAGTATTCCAAGTACCCAAAGAGCTAGTAGACGACAGCCACCCACTCCTCTACAACCAGTTCGACAGTCGTGGCTTCATAAGATTTTACACCACAGAAGAGGCCAAGAAGGCAAAATCACCCATCAAAGCCTATTGTGGTGTTAAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

261

Amino Acids

29.88

Weight (kDa)

5.69

Isoelectric Point (pI)

40.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	117 - 208	1.1e-20	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001604)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28210 FvH4_6g42700 FvH4_7g15780
malus_domestica	MD03G1085000.v1.1 MD05G1208700.v1.1 MD10G1195200.v1.1 MD11G1092600.v1.1
prunus_persica	Prupe.4G262900_v2.0.a1 Prupe.4G263000_v2.0.a1 Prupe.4G263100_v2.0.a1 Prupe.4G264400_v2.0.a1
pyrus_communis	pycom03g06720 pycom05g19460 pycom10g16890 pycom11g07800 pycom11g07820
rosa_chinensis	RchiOBHm_Chr1g0358581 RchiOBHm_Chr4g0395841 RchiOBHm_Chr4g0444921 RchiOBHm_Chr5g0050321 RchiOBHm_Chr5g0050341
rosa_laevigata	RLG00000027944 RLG00000034696 RLG00000034697 RLG00000034698
rosa_multiflora	Rmu_sc0001103.1_g000025 Rmu_sc0001609.1_g000014 Rmu_sc0005060.1_g000004 Rmu_sc0005060.1_g000006
rosa_roxburghii	Rroxscaffold_1G00027250 Rroxscaffold_1G00030670 Rroxscaffold_1G00030700 Rroxscaffold_4G00297680 Rroxscaffold_4G00297780
rosa_rugosa	Rorug01G0262600 Rorug01G0262700 Rorug05G0260000 Rorug05G0260000 Rorug05G0260100
rosa_samantha	Rh1BG243900 Rh1CG260900 Rh4BG429600 Rh4DG425500 Rh5AG331700 Rh5AG331800 Rh5CG369400 Rh5CG369500
rosa_wichuraiana	Rw1G024650 Rw5G031370 Rw5G031380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	452
Acc65I	GGTACC	1 cut(s)	292
AccB1I	GGYRCC	1 cut(s)	292
AccBSI	CCGCTC	2 cut(s)	109, 118
AccI	GTMKAC	1 cut(s)	663
AciI	CCGC	3 cut(s)	107, 116, 588
AcoI	YGGCCR	2 cut(s)	16, 132
AcsI	RAATTY	1 cut(s)	206
AcuI	CTGAAG	1 cut(s)	518
AfaI	GTAC	3 cut(s)	294, 356, 648
AfiI	CCNNNNNNNGG	3 cut(s)	25, 86, 517
AgsI	TTSAA	1 cut(s)	327
AjnI	CCWGG	1 cut(s)	23
AluBI	AGCT	3 cut(s)	285, 563, 658
AluI	AGCT	3 cut(s)	285, 563, 658
Ama87I	CYCGRG	2 cut(s)	242, 452
AoxI	GGCC	5 cut(s)	16, 132, 188, 448, 735
ApoI	RAATTY	1 cut(s)	206
ArsI	GACNNNNNNTTYG	3 cut(s)	28, 42, 74
Asp718I	GGTACC	1 cut(s)	292
AspS9I	GGNCC	2 cut(s)	98, 178
AsuHPI	GGTGA	3 cut(s)	485, 536, 744
AsuII	TTCGAA	1 cut(s)	279
AvaI	CYCGRG	2 cut(s)	242, 452
AvaII	GGWCC	2 cut(s)	98, 178
BalI	TGGCCA	2 cut(s)	18, 134
BanI	GGYRCC	1 cut(s)	292
BccI	CCATC	4 cut(s)	464, 521, 579, 764
BciT130I	CCWGG	1 cut(s)	25
BfaI	CTAG	2 cut(s)	659, 784
BglI	GCCNNNNNGGC	1 cut(s)	743
BglII	AGATCT	1 cut(s)	223
BisI	GCNGC	1 cut(s)	116
BlsI	GCNGC	1 cut(s)	117
Bme1390I	CCNGG	1 cut(s)	25
Bme18I	GGWCC	2 cut(s)	98, 178
BmeT110I	CYCGRG	2 cut(s)	242, 452
BmgT120I	GGNCC	2 cut(s)	98, 178
BmiI	GGNNCC	3 cut(s)	78, 179, 294
BmrFI	CCNGG	1 cut(s)	25
BmrI	ACTGGG	1 cut(s)	620
BmuI	ACTGGG	1 cut(s)	620
Bpu14I	TTCGAA	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	335
BsaJI	CCNNGG	2 cut(s)	24, 85
Bsc4I	CCNNNNNNNGG	3 cut(s)	25, 86, 517
Bse1I	ACTGG	2 cut(s)	615, 691
Bse3DI	GCAATG	1 cut(s)	553
BseBI	CCWGG	1 cut(s)	25
BseDI	CCNNGG	2 cut(s)	24, 85
BseGI	GGATG	2 cut(s)	149, 475
BseLI	CCNNNNNNNGG	3 cut(s)	25, 86, 517
BseMI	GCAATG	1 cut(s)	553
BseMII	CTCAG	1 cut(s)	518
BseNI	ACTGG	2 cut(s)	615, 691
BseRI	GAGGAG	2 cut(s)	89, 671
BsgI	GTGCAG	1 cut(s)	480
BshFI	GGCC	5 cut(s)	18, 134, 190, 450, 737
BshNI	GGYRCC	1 cut(s)	292
BsiHKCI	CYCGRG	2 cut(s)	242, 452
BslFI	GGGAC	3 cut(s)	191, 260, 605
BslI	CCNNNNNNNGG	3 cut(s)	25, 86, 517
BsmFI	GGGAC	3 cut(s)	191, 260, 605
BsnI	GGCC	5 cut(s)	18, 134, 190, 450, 737
BsoBI	CYCGRG	2 cut(s)	242, 452
Bsp119I	TTCGAA	1 cut(s)	279
Bsp143I	GATC	1 cut(s)	223
BspACI	CCGC	3 cut(s)	107, 116, 588
BspANI	GGCC	5 cut(s)	18, 134, 190, 450, 737
BspCNI	CTCAG	1 cut(s)	517
BspLI	GGNNCC	3 cut(s)	78, 179, 294
BspT104I	TTCGAA	1 cut(s)	279
BspT107I	GGYRCC	1 cut(s)	292
BsrBI	CCGCTC	2 cut(s)	109, 118
BsrDI	GCAATG	1 cut(s)	553
BsrI	ACTGG	2 cut(s)	615, 691
BssECI	CCNNGG	2 cut(s)	24, 85
BssMI	GATC	1 cut(s)	223
Bst2UI	CCWGG	1 cut(s)	25
Bst4CI	ACNGT	4 cut(s)	262, 332, 382, 701
Bst6I	CTCTTC	3 cut(s)	363, 518, 726
BstBI	TTCGAA	1 cut(s)	279
BstC8I	GCNNGC	1 cut(s)	565
BstDEI	CTNAG	2 cut(s)	465, 504
BstDSI	CCRYGG	1 cut(s)	85
BstF5I	GGATG	2 cut(s)	149, 475
BstKTI	GATC	1 cut(s)	226
BstMBI	GATC	1 cut(s)	223
BstMWI	GCNNNNNNNGC	2 cut(s)	115, 743
BstNI	CCWGG	1 cut(s)	25
BstSCI	CCNGG	1 cut(s)	23
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
BsuRI	GGCC	5 cut(s)	18, 134, 190, 450, 737
BtgI	CCRYGG	1 cut(s)	85
BtsCI	GGATG	2 cut(s)	149, 475
BtsI	GCAGTG	1 cut(s)	583
BtsIMutI	CAGTG	3 cut(s)	267, 583, 608
Cac8I	GCNNGC	1 cut(s)	565
Cfr13I	GGNCC	2 cut(s)	98, 178
Csp6I	GTAC	3 cut(s)	293, 355, 647
CviAII	CATG	5 cut(s)	112, 130, 184, 437, 517
CviQI	GTAC	3 cut(s)	293, 355, 647
DdeI	CTNAG	2 cut(s)	465, 504
DpnI	GATC	1 cut(s)	225
DpnII	GATC	1 cut(s)	223
EaeI	YGGCCR	2 cut(s)	16, 132
Eam1104I	CTCTTC	3 cut(s)	363, 518, 726
EarI	CTCTTC	3 cut(s)	363, 518, 726
Eco47I	GGWCC	2 cut(s)	98, 178
Eco57I	CTGAAG	1 cut(s)	518
Eco88I	CYCGRG	2 cut(s)	242, 452
EcoO109I	RGGNCCY	1 cut(s)	178
EcoRII	CCWGG	1 cut(s)	23
FaeI	CATG	5 cut(s)	115, 133, 187, 440, 520
FaqI	GGGAC	3 cut(s)	191, 260, 605
FatI	CATG	5 cut(s)	111, 129, 183, 436, 516
FauI	CCCGC	2 cut(s)	114, 581
FblI	GTMKAC	1 cut(s)	663
Fnu4HI	GCNGC	1 cut(s)	116
FokI	GGATG	2 cut(s)	136, 482
Fsp4HI	GCNGC	1 cut(s)	116
FspBI	CTAG	2 cut(s)	659, 784
GluI	GCNGC	1 cut(s)	116
HaeIII	GGCC	5 cut(s)	18, 134, 190, 450, 737
Hin1II	CATG	5 cut(s)	115, 133, 187, 440, 520
HindIII	AAGCTT	2 cut(s)	283, 561
HinfI	GANTC	3 cut(s)	311, 491, 598
HphI	GGTGA	3 cut(s)	485, 536, 744
Hpy166II	GTNNAC	2 cut(s)	621, 664
Hpy188I	TCNGA	3 cut(s)	98, 396, 462
Hpy188III	TCNNGA	1 cut(s)	61
Hpy8I	GTNNAC	2 cut(s)	621, 664
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	3 cut(s)	119, 510, 736
HpyCH4III	ACNGT	4 cut(s)	262, 332, 382, 701
HpyCH4IV	ACGT	3 cut(s)	39, 144, 623
HpyCH4V	TGCA	1 cut(s)	497
HpyF10VI	GCNNNNNNNGC	2 cut(s)	115, 743
HpyF3I	CTNAG	2 cut(s)	465, 504
HpySE526I	ACGT	3 cut(s)	39, 144, 623
Hsp92II	CATG	5 cut(s)	115, 133, 187, 440, 520
KpnI	GGTACC	1 cut(s)	296
Kzo9I	GATC	1 cut(s)	223
LmnI	GCTCC	2 cut(s)	76, 543
MaeI	CTAG	2 cut(s)	659, 784
MaeII	ACGT	3 cut(s)	39, 144, 623
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	1 cut(s)	225
MbiI	CCGCTC	2 cut(s)	109, 118
MboI	GATC	1 cut(s)	223
MboII	GAAGA	5 cut(s)	329, 332, 380, 505, 743
MflI	RGATCY	1 cut(s)	223
MlsI	TGGCCA	2 cut(s)	18, 134
MluCI	AATT	1 cut(s)	206
MluNI	TGGCCA	2 cut(s)	18, 134
MlyI	GAGTC	2 cut(s)	500, 592
MnlI	CCTC	8 cut(s)	56, 67, 191, 448, 461, 521, 692, 727
Mox20I	TGGCCA	2 cut(s)	18, 134
MscI	TGGCCA	2 cut(s)	18, 134
MseI	TTAA	2 cut(s)	627, 777
Msp20I	TGGCCA	2 cut(s)	18, 134
MspR9I	CCNGG	1 cut(s)	25
MvaI	CCWGG	1 cut(s)	25
MwoI	GCNNNNNNNGC	2 cut(s)	115, 743
NdeII	GATC	1 cut(s)	223
NlaIII	CATG	5 cut(s)	115, 133, 187, 440, 520
NlaIV	GGNNCC	3 cut(s)	78, 179, 294
NmuCI	GTSAC	1 cut(s)	145
NspV	TTCGAA	1 cut(s)	279
PaeR7I	CTCGAG	1 cut(s)	452
PcsI	WCGNNNNNNNCGW	2 cut(s)	45, 450
PfeI	GAWTC	1 cut(s)	311
PflFI	GACNNNGTC	2 cut(s)	143, 380
PkrI	GCNGC	1 cut(s)	117
PleI	GAGTC	2 cut(s)	499, 592
PpsI	GAGTC	2 cut(s)	499, 592
PpuMI	RGGWCCY	1 cut(s)	178
Psp5II	RGGWCCY	1 cut(s)	178
Psp6I	CCWGG	1 cut(s)	23
PspGI	CCWGG	1 cut(s)	23
PspN4I	GGNNCC	3 cut(s)	78, 179, 294
PspPI	GGNCC	2 cut(s)	98, 178
PspPPI	RGGWCCY	1 cut(s)	178
PspXI	VCTCGAGB	1 cut(s)	452
PsuI	RGATCY	1 cut(s)	223
PsyI	GACNNNGTC	2 cut(s)	143, 380
RsaI	GTAC	3 cut(s)	294, 356, 648
RsaNI	GTAC	3 cut(s)	293, 355, 647
SaqAI	TTAA	2 cut(s)	627, 777
SatI	GCNGC	1 cut(s)	116
Sau3AI	GATC	1 cut(s)	223
Sau96I	GGNCC	2 cut(s)	98, 178
SchI	GAGTC	2 cut(s)	500, 592
ScrFI	CCNGG	1 cut(s)	25
Sfr274I	CTCGAG	1 cut(s)	452
SfuI	TTCGAA	1 cut(s)	279
SinI	GGWCC	2 cut(s)	98, 178
SlaI	CTCGAG	1 cut(s)	452
SmlI	CTYRAG	2 cut(s)	350, 452
SmoI	CTYRAG	2 cut(s)	350, 452
Sse9I	AATT	1 cut(s)	206
SsiI	CCGC	3 cut(s)	107, 116, 588
SspMI	CTAG	2 cut(s)	659, 784
StyD4I	CCNGG	1 cut(s)	23
TaaI	ACNGT	4 cut(s)	262, 332, 382, 701
TaiI	ACGT	3 cut(s)	42, 147, 626
TaqI	TCGA	7 cut(s)	36, 48, 279, 453, 489, 574, 696
TasI	AATT	1 cut(s)	206
TatI	WGTACW	1 cut(s)	354
TauI	GCSGC	1 cut(s)	118
TfiI	GAWTC	1 cut(s)	311
Tru1I	TTAA	2 cut(s)	627, 777
Tru9I	TTAA	2 cut(s)	627, 777
TscAI	CASTG	3 cut(s)	267, 590, 615
TseFI	GTSAC	1 cut(s)	145
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	4 cut(s)	138, 324, 505, 700
TspGWI	ACGGA	1 cut(s)	74
TspRI	CASTG	3 cut(s)	267, 590, 615
Tth111I	GACNNNGTC	2 cut(s)	143, 380
VpaK11BI	GGWCC	2 cut(s)	98, 178
XapI	RAATTY	1 cut(s)	206
XhoI	CTCGAG	1 cut(s)	452
XmiI	GTMKAC	1 cut(s)	663
XspI	CTAG	2 cut(s)	659, 784

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.