Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0001604

Physical Location & Seq

Genomic Coordinates Forward (+)

20108651 .. 20109885

Gene Structure 1235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g16890.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGGTTCCTTAGCACCTCCCAAGCTTCCTACTATCAACTTCTCAGCCGAAGGCTTGAAGCCCGGATCAAGTTCTTGGTTGTCCACCGCCAAACAAGTCCGGTTCGCACTCGAAGAATACGGCTCTTTCGTGGCACAGTATGATCAAATTTCTCCAGAACTTCAAAACAACATCTTTGGCCAGGCCGCAGATCTGTTTGAGGTTCCCGTAGAAAACAAAGTAAAGAATGTTGGTGAGCAACCGTATCATGGGTATATTGGTCCAAACCCCTTCATGCCACTCTATGAAAGCTTGTGCATCGATAATGTGACATCTCCCCAGGCAACTCACAAGTTCAAAAATCTGATGTGGCCTGCTGGAAAGAAAAACTTCTGTGAAACTACAGATTCATTTGGGCAGTTATTAGGAGATTTGGAACGAACAGTGGGACAAATGTTATTCGACAGCTTTGGGGTAGGAAACGAGTACGAGTCTGTCGCTAATTGCAACAGTCACCTCCTTAGATTCATCAAATATGAGGTGCCGGAGGACACTGACACTACGTTAAGGTTTCCAATGCATACAGACAATAGCTTCACAACCATAGTTGTTCAGCACGATGTTAGTGGGTTGGAGGTTAAAACAAAGGAAGGTGATTGGATTAATATTGAGTCTGTGCCTTCACGGTTCTTATTCATGGCAGCCGATGGATTGCAGATGTGGAGCAATGACAGAATAAAAGCTTGCCAACACCGAGTGAAGCATTGCGGAGACAAGACGAGATACTCTCTCGGTCTGTTTACATTCAACAATGGAGTCTTACAAGTACCAAAAGAACTAGTGGACGATGAGCACCCACTGCTCTATAATCCATGTGATAGTCGTGGCTATACACGATTTCATGCTTCGGCAGAGTCCAAGAAGGCAGCGTCTCGTATCAAAGCTTATTGCGGTATCAAAGTTGAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

317

Amino Acids

35.48

Weight (kDa)

5.74

Isoelectric Point (pI)

36.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001604)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28210 FvH4_6g42700 FvH4_7g15780
malus_domestica	MD03G1085000.v1.1 MD05G1208700.v1.1 MD10G1195200.v1.1 MD11G1092600.v1.1
prunus_persica	Prupe.4G262900_v2.0.a1 Prupe.4G263000_v2.0.a1 Prupe.4G263100_v2.0.a1 Prupe.4G264400_v2.0.a1
pyrus_communis	pycom03g06720 pycom05g19460 pycom10g16890 pycom11g07800 pycom11g07820
rosa_chinensis	RchiOBHm_Chr1g0358581 RchiOBHm_Chr4g0395841 RchiOBHm_Chr4g0444921 RchiOBHm_Chr5g0050321 RchiOBHm_Chr5g0050341
rosa_laevigata	RLG00000027944 RLG00000034696 RLG00000034697 RLG00000034698
rosa_multiflora	Rmu_sc0001103.1_g000025 Rmu_sc0001609.1_g000014 Rmu_sc0005060.1_g000004 Rmu_sc0005060.1_g000006
rosa_roxburghii	Rroxscaffold_1G00027250 Rroxscaffold_1G00030670 Rroxscaffold_1G00030700 Rroxscaffold_4G00297680 Rroxscaffold_4G00297780
rosa_rugosa	Rorug01G0262600 Rorug01G0262700 Rorug05G0260000 Rorug05G0260000 Rorug05G0260100
rosa_samantha	Rh1BG243900 Rh1CG260900 Rh4BG429600 Rh4DG425500 Rh5AG331700 Rh5AG331800 Rh5CG369400 Rh5CG369500
rosa_wichuraiana	Rw1G024650 Rw5G031370 Rw5G031380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	520
AciI	CCGC	4 cut(s)	87, 186, 747, 930
AclWI	GGATC	1 cut(s)	73
AcoI	YGGCCR	1 cut(s)	178
AcsI	RAATTY	1 cut(s)	147
AdeI	CACNNNGTG	1 cut(s)	736
AfaI	GTAC	2 cut(s)	467, 807
AfiI	CCNNNNNNNGG	1 cut(s)	248
AgsI	TTSAA	5 cut(s)	58, 164, 337, 787, 944
AhlI	ACTAGT	1 cut(s)	817
AjnI	CCWGG	2 cut(s)	180, 318
AluBI	AGCT	6 cut(s)	25, 291, 447, 573, 722, 923
AluI	AGCT	6 cut(s)	25, 291, 447, 573, 722, 923
Alw21I	GWGCWC	1 cut(s)	834
Alw26I	GTCTC	2 cut(s)	744, 915
AlwI	GGATC	1 cut(s)	73
AoxI	GGCC	3 cut(s)	178, 183, 350
ApeKI	GCWGC	2 cut(s)	680, 905
ApoI	RAATTY	1 cut(s)	147
AseI	ATTAAT	1 cut(s)	642
Asp700I	GAANNNNTTC	1 cut(s)	368
AspS9I	GGNCC	1 cut(s)	260
AsuC2I	CCSGG	1 cut(s)	63
AsuHPI	GGTGA	3 cut(s)	245, 485, 644
AvaII	GGWCC	1 cut(s)	260
BalI	TGGCCA	1 cut(s)	180
BanI	GGYRCC	1 cut(s)	520
Bbv12I	GWGCWC	1 cut(s)	834
BbvI	GCAGC	2 cut(s)	692, 917
BccI	CCATC	1 cut(s)	680
BceAI	ACGGC	1 cut(s)	136
BciT130I	CCWGG	2 cut(s)	182, 320
BclI	TGATCA	1 cut(s)	142
BcnI	CCSGG	1 cut(s)	63
BcoDI	GTCTC	2 cut(s)	744, 915
BcuI	ACTAGT	1 cut(s)	817
BfaI	CTAG	2 cut(s)	818, 949
BfmI	CTRYAG	1 cut(s)	381
BglII	AGATCT	1 cut(s)	190
BisI	GCNGC	3 cut(s)	186, 681, 906
BlsI	GCNGC	3 cut(s)	187, 682, 907
Bme1390I	CCNGG	3 cut(s)	63, 182, 320
Bme18I	GGWCC	1 cut(s)	260
BmgT120I	GGNCC	1 cut(s)	260
BmiI	GGNNCC	3 cut(s)	7, 204, 522
BmrFI	CCNGG	3 cut(s)	63, 182, 320
BmsI	GCATC	1 cut(s)	306
BplI	GAGNNNNNCTC	2 cut(s)	751, 783
BpmI	CTGGAG	1 cut(s)	138
Bpu10I	CCTNAGC	1 cut(s)	10
BpuMI	CCSGG	1 cut(s)	63
Bsa29I	ATCGAT	1 cut(s)	300
BsaJI	CCNNGG	1 cut(s)	318
BsaWI	WCCGGW	1 cut(s)	99
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse3DI	GCAATG	2 cut(s)	712, 742
BseBI	CCWGG	2 cut(s)	182, 320
BseCI	ATCGAT	1 cut(s)	300
BseDI	CCNNGG	1 cut(s)	318
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseMI	GCAATG	2 cut(s)	712, 742
BseMII	CTCAG	1 cut(s)	57
BseXI	GCAGC	2 cut(s)	692, 917
BshFI	GGCC	3 cut(s)	180, 185, 352
BshNI	GGYRCC	1 cut(s)	520
BshVI	ATCGAT	1 cut(s)	300
BsiHKAI	GWGCWC	1 cut(s)	834
BsiSI	CCGG	3 cut(s)	63, 100, 524
BslFI	GGGAC	1 cut(s)	441
BslI	CCNNNNNNNGG	1 cut(s)	248
BsmAI	GTCTC	2 cut(s)	744, 915
BsmBI	CGTCTC	1 cut(s)	915
BsmFI	GGGAC	1 cut(s)	441
BsnI	GGCC	3 cut(s)	180, 185, 352
Bsp1286I	GDGCHC	1 cut(s)	834
Bsp143I	GATC	3 cut(s)	65, 142, 190
BspACI	CCGC	4 cut(s)	87, 186, 747, 930
BspANI	GGCC	3 cut(s)	180, 185, 352
BspCNI	CTCAG	1 cut(s)	56
BspDI	ATCGAT	1 cut(s)	300
BspLI	GGNNCC	3 cut(s)	7, 204, 522
BspPI	GGATC	1 cut(s)	73
BspT107I	GGYRCC	1 cut(s)	520
BsrDI	GCAATG	2 cut(s)	712, 742
BssECI	CCNNGG	1 cut(s)	318
BssMI	GATC	3 cut(s)	65, 142, 190
Bst2UI	CCWGG	2 cut(s)	182, 320
Bst4CI	ACNGT	5 cut(s)	138, 243, 424, 491, 666
BstAPI	GCANNNNNTGC	1 cut(s)	838
BstC8I	GCNNGC	2 cut(s)	354, 724
BstDEI	CTNAG	3 cut(s)	10, 43, 500
BstKTI	GATC	3 cut(s)	68, 145, 193
BstMAI	GTCTC	2 cut(s)	744, 915
BstMBI	GATC	3 cut(s)	65, 142, 190
BstMWI	GCNNNNNNNGC	1 cut(s)	838
BstNI	CCWGG	2 cut(s)	182, 320
BstSCI	CCNGG	3 cut(s)	61, 180, 318
BstSFI	CTRYAG	1 cut(s)	381
BstV1I	GCAGC	2 cut(s)	692, 917
BstX2I	RGATCY	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	190
Bsu15I	ATCGAT	1 cut(s)	300
BsuRI	GGCC	3 cut(s)	180, 185, 352
BsuTUI	ATCGAT	1 cut(s)	300
BtsI	GCAGTG	1 cut(s)	836
BtsIMutI	CAGTG	3 cut(s)	429, 531, 836
Cac8I	GCNNGC	2 cut(s)	354, 724
Cfr13I	GGNCC	1 cut(s)	260
ClaI	ATCGAT	1 cut(s)	300
CseI	GACGC	1 cut(s)	897
Csp6I	GTAC	2 cut(s)	466, 806
CviAII	CATG	5 cut(s)	248, 274, 676, 852, 881
CviQI	GTAC	2 cut(s)	466, 806
DdeI	CTNAG	3 cut(s)	10, 43, 500
DpnI	GATC	3 cut(s)	67, 144, 192
DpnII	GATC	3 cut(s)	65, 142, 190
DraIII	CACNNNGTG	1 cut(s)	736
EaeI	YGGCCR	1 cut(s)	178
Eco47I	GGWCC	1 cut(s)	260
EcoRII	CCWGG	2 cut(s)	180, 318
EcoT22I	ATGCAT	1 cut(s)	561
Esp3I	CGTCTC	1 cut(s)	915
FaeI	CATG	5 cut(s)	251, 277, 679, 855, 884
FalI	AAGNNNNNCTT	2 cut(s)	353, 385
FaqI	GGGAC	1 cut(s)	441
FatI	CATG	5 cut(s)	247, 273, 675, 851, 880
FbaI	TGATCA	1 cut(s)	142
Fnu4HI	GCNGC	3 cut(s)	186, 681, 906
Fsp4HI	GCNGC	3 cut(s)	186, 681, 906
FspBI	CTAG	2 cut(s)	818, 949
GluI	GCNGC	3 cut(s)	186, 681, 906
GsuI	CTGGAG	1 cut(s)	138
HaeIII	GGCC	3 cut(s)	180, 185, 352
HapII	CCGG	3 cut(s)	63, 100, 524
HgaI	GACGC	1 cut(s)	897
Hin1II	CATG	5 cut(s)	251, 277, 679, 855, 884
HindIII	AAGCTT	4 cut(s)	23, 289, 720, 921
HinfI	GANTC	6 cut(s)	386, 470, 504, 650, 795, 893
HpaII	CCGG	3 cut(s)	63, 100, 524
HphI	GGTGA	3 cut(s)	245, 485, 644
Hpy166II	GTNNAC	3 cut(s)	84, 780, 823
Hpy188I	TCNGA	1 cut(s)	345
Hpy188III	TCNNGA	1 cut(s)	155
Hpy8I	GTNNAC	3 cut(s)	84, 780, 823
HpyAV	CCTTC	5 cut(s)	44, 280, 623, 669, 895
HpyCH4III	ACNGT	5 cut(s)	138, 243, 424, 491, 666
HpyCH4IV	ACGT	1 cut(s)	542
HpyCH4V	TGCA	4 cut(s)	297, 486, 559, 694
HpyF10VI	GCNNNNNNNGC	1 cut(s)	838
HpyF3I	CTNAG	3 cut(s)	10, 43, 500
HpySE526I	ACGT	1 cut(s)	542
Hsp92II	CATG	5 cut(s)	251, 277, 679, 855, 884
Ksp22I	TGATCA	1 cut(s)	142
Kzo9I	GATC	3 cut(s)	65, 142, 190
LmnI	GCTCC	1 cut(s)	702
Lsp1109I	GCAGC	2 cut(s)	692, 917
LweI	GCATC	1 cut(s)	306
MaeI	CTAG	2 cut(s)	818, 949
MaeII	ACGT	1 cut(s)	542
MaeIII	GTNAC	2 cut(s)	307, 491
MalI	GATC	3 cut(s)	67, 144, 192
MboI	GATC	3 cut(s)	65, 142, 190
MboII	GAAGA	1 cut(s)	125
MflI	RGATCY	1 cut(s)	190
MhlI	GDGCHC	1 cut(s)	834
MlsI	TGGCCA	1 cut(s)	180
MluCI	AATT	2 cut(s)	147, 481
MluNI	TGGCCA	1 cut(s)	180
MlyI	GAGTC	4 cut(s)	479, 659, 804, 902
MmeI	TCCRAC	1 cut(s)	591
MnlI	CCTC	6 cut(s)	27, 193, 506, 511, 520, 607
Mox20I	TGGCCA	1 cut(s)	180
Mph1103I	ATGCAT	1 cut(s)	561
MroXI	GAANNNNTTC	1 cut(s)	368
MscI	TGGCCA	1 cut(s)	180
MseI	TTAA	3 cut(s)	545, 618, 642
Msp20I	TGGCCA	1 cut(s)	180
MspI	CCGG	3 cut(s)	63, 100, 524
MspR9I	CCNGG	3 cut(s)	63, 182, 320
MvaI	CCWGG	2 cut(s)	182, 320
MwoI	GCNNNNNNNGC	1 cut(s)	838
NciI	CCSGG	1 cut(s)	63
NdeII	GATC	3 cut(s)	65, 142, 190
NlaIII	CATG	5 cut(s)	251, 277, 679, 855, 884
NlaIV	GGNNCC	3 cut(s)	7, 204, 522
NmuCI	GTSAC	2 cut(s)	307, 491
NsiI	ATGCAT	1 cut(s)	561
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PdmI	GAANNNNTTC	1 cut(s)	368
PfeI	GAWTC	2 cut(s)	386, 504
PkrI	GCNGC	3 cut(s)	187, 682, 907
PleI	GAGTC	4 cut(s)	478, 658, 803, 901
PpsI	GAGTC	4 cut(s)	478, 658, 803, 901
PshBI	ATTAAT	1 cut(s)	642
Psp6I	CCWGG	2 cut(s)	180, 318
PspGI	CCWGG	2 cut(s)	180, 318
PspN4I	GGNNCC	3 cut(s)	7, 204, 522
PspPI	GGNCC	1 cut(s)	260
PsuI	RGATCY	1 cut(s)	190
RsaI	GTAC	2 cut(s)	467, 807
RsaNI	GTAC	2 cut(s)	466, 806
SaqAI	TTAA	3 cut(s)	545, 618, 642
SatI	GCNGC	3 cut(s)	186, 681, 906
Sau3AI	GATC	3 cut(s)	65, 142, 190
Sau96I	GGNCC	1 cut(s)	260
SchI	GAGTC	4 cut(s)	479, 659, 804, 902
ScrFI	CCNGG	3 cut(s)	63, 182, 320
SduI	GDGCHC	1 cut(s)	834
SfaNI	GCATC	1 cut(s)	306
SfcI	CTRYAG	1 cut(s)	381
SinI	GGWCC	1 cut(s)	260
SpeI	ACTAGT	1 cut(s)	817
Sse9I	AATT	2 cut(s)	147, 481
SsiI	CCGC	4 cut(s)	87, 186, 747, 930
SspI	AATATT	1 cut(s)	646
SspMI	CTAG	2 cut(s)	818, 949
StyD4I	CCNGG	3 cut(s)	61, 180, 318
TaaI	ACNGT	5 cut(s)	138, 243, 424, 491, 666
TaiI	ACGT	1 cut(s)	545
TaqI	TCGA	3 cut(s)	111, 300, 441
TaqII	GACCGA	1 cut(s)	761
TasI	AATT	2 cut(s)	147, 481
TauI	GCSGC	1 cut(s)	188
TfiI	GAWTC	2 cut(s)	386, 504
Tru1I	TTAA	3 cut(s)	545, 618, 642
Tru9I	TTAA	3 cut(s)	545, 618, 642
TscAI	CASTG	3 cut(s)	429, 538, 843
TseFI	GTSAC	2 cut(s)	307, 491
TseI	GCWGC	2 cut(s)	680, 905
Tsp45I	GTSAC	2 cut(s)	307, 491
TspDTI	ATGAA	6 cut(s)	262, 300, 378, 496, 664, 869
TspRI	CASTG	3 cut(s)	429, 538, 843
VpaK11BI	GGWCC	1 cut(s)	260
VspI	ATTAAT	1 cut(s)	642
XapI	RAATTY	1 cut(s)	147
XmnI	GAANNNNTTC	1 cut(s)	368
XspI	CTAG	2 cut(s)	818, 949
Zsp2I	ATGCAT	1 cut(s)	561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.