Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001604

Physical Location & Seq

Genomic Coordinates Reverse (-)

40951392 .. 40952760

Gene Structure 1369 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00030700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGGTTCCATGACACTTCCCAAAGAGCTTCCCACCATCAATTTCTCCCTCCAGGACTTGAAGCCTGGCTCAAGCTCCTGGGCTTCCACCTGCAAACAAGTCCGCTATGCACTAGAAGCATACGGTTGCTTTGTGGCATTGTACCAACAAGTTTCCCCACAGCTTATGGACAATATCTTTGGCCAATCCAAGGATTTGTTCGAGGTTCCCTCGAAAACAAAGTCAAGAACACCAGCGAGGAGCCTTACCGTGGCTATATCGGACCAAACCCGCTCATGCCGCTCTATGAAGGCATGGCCATTGACAACGTCAAATCCCCACAAGAAACTCAAAAGTACGTTCAGGGATCTCATGTGGCCTAACGGAAAGACCAAATTCTGCGAAATCACAGATCTATTTGCCAAGTTGCTCGGGGACGTGGAAAAGATGTTGTTCGAAAGCTTCGGGATACCCCAAGAGCAATATGAATCGTTGGCGAGTTCAAACAGTCATCTTCTTCGTTTTCTCAAGTATAGGACACCAGAAGAGAGTGACGCAAACATCAGGTTTCCGAGCCACACGGACAAGAACTTCACCACCATTGTTGTTCAGCATGATGTCGGTGGCCTCGAGGTTCTGACTAAGGATGGTGATTGGACTAGTGTTGAGTCTGCACCTTCTCAGTTCCTCTTCATGGCTGGTGATGGACTTCAGGTATGGAGCAATGACAGAATAAAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

240

Amino Acids

27.04

Weight (kDa)

8.28

Isoelectric Point (pI)

44.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	10 - 79	4.3e-09	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	169 - 239	1.4e-13	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001604)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28210 FvH4_6g42700 FvH4_7g15780
malus_domestica	MD03G1085000.v1.1 MD05G1208700.v1.1 MD10G1195200.v1.1 MD11G1092600.v1.1
prunus_persica	Prupe.4G262900_v2.0.a1 Prupe.4G263000_v2.0.a1 Prupe.4G263100_v2.0.a1 Prupe.4G264400_v2.0.a1
pyrus_communis	pycom03g06720 pycom05g19460 pycom10g16890 pycom11g07800 pycom11g07820
rosa_chinensis	RchiOBHm_Chr1g0358581 RchiOBHm_Chr4g0395841 RchiOBHm_Chr4g0444921 RchiOBHm_Chr5g0050321 RchiOBHm_Chr5g0050341
rosa_laevigata	RLG00000027944 RLG00000034696 RLG00000034697 RLG00000034698
rosa_multiflora	Rmu_sc0001103.1_g000025 Rmu_sc0001609.1_g000014 Rmu_sc0005060.1_g000004 Rmu_sc0005060.1_g000006
rosa_roxburghii	Rroxscaffold_1G00027250 Rroxscaffold_1G00030670 Rroxscaffold_1G00030700 Rroxscaffold_4G00297680 Rroxscaffold_4G00297780
rosa_rugosa	Rorug01G0262600 Rorug01G0262700 Rorug05G0260000 Rorug05G0260000 Rorug05G0260100
rosa_samantha	Rh1BG243900 Rh1CG260900 Rh4BG429600 Rh4DG425500 Rh5AG331700 Rh5AG331800 Rh5CG369400 Rh5CG369500
rosa_wichuraiana	Rw1G024650 Rw5G031370 Rw5G031380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	98
AbsI	CCTCGAGG	1 cut(s)	608
Acc36I	ACCTGC	1 cut(s)	98
AccBSI	CCGCTC	2 cut(s)	273, 282
AciI	CCGC	3 cut(s)	103, 271, 280
AclWI	GGATC	1 cut(s)	354
AcoI	YGGCCR	2 cut(s)	181, 296
AcsI	RAATTY	1 cut(s)	374
AcuI	CTGAAG	1 cut(s)	674
AfaI	GTAC	2 cut(s)	143, 337
AfiI	CCNNNNNNNGG	3 cut(s)	190, 250, 673
AgsI	TTSAA	2 cut(s)	61, 483
AhlI	ACTAGT	1 cut(s)	638
AjiI	CACGTC	1 cut(s)	418
AjnI	CCWGG	3 cut(s)	51, 64, 77
AjuI	GAANNNNNNNTTGG	2 cut(s)	182, 214
AluBI	AGCT	4 cut(s)	28, 75, 163, 441
AluI	AGCT	4 cut(s)	28, 75, 163, 441
AlwI	GGATC	1 cut(s)	354
Ama87I	CYCGRG	2 cut(s)	410, 608
AoxI	GGCC	4 cut(s)	181, 296, 356, 604
ApoI	RAATTY	1 cut(s)	374
ArsI	GACNNNNNNTTYG	4 cut(s)	161, 193, 206, 238
AspS9I	GGNCC	1 cut(s)	262
AsuHPI	GGTGA	3 cut(s)	565, 641, 692
AsuII	TTCGAA	1 cut(s)	435
AvaI	CYCGRG	2 cut(s)	410, 608
AvaII	GGWCC	1 cut(s)	262
BalI	TGGCCA	2 cut(s)	183, 298
BccI	CCATC	3 cut(s)	44, 620, 677
BciT130I	CCWGG	3 cut(s)	53, 66, 79
BciVI	GTATCC	1 cut(s)	441
BcuI	ACTAGT	1 cut(s)	638
BfaI	CTAG	2 cut(s)	113, 639
BfuAI	ACCTGC	1 cut(s)	98
BfuI	GTATCC	1 cut(s)	441
BglII	AGATCT	1 cut(s)	391
BisI	GCNGC	1 cut(s)	280
BlsI	GCNGC	1 cut(s)	281
Bme1390I	CCNGG	3 cut(s)	53, 66, 79
Bme18I	GGWCC	1 cut(s)	262
BmeT110I	CYCGRG	2 cut(s)	410, 608
BmgBI	CACGTC	1 cut(s)	418
BmgT120I	GGNCC	1 cut(s)	262
BmiI	GGNNCC	3 cut(s)	7, 207, 242
BmrFI	CCNGG	3 cut(s)	53, 66, 79
BplI	GAGNNNNNCTC	2 cut(s)	194, 226
BpmI	CTGGAG	1 cut(s)	35
Bpu14I	TTCGAA	1 cut(s)	435
BpuEI	CTTGAG	2 cut(s)	55, 491
BsaJI	CCNNGG	3 cut(s)	78, 189, 249
Bsc4I	CCNNNNNNNGG	3 cut(s)	190, 250, 673
Bse3DI	GCAATG	1 cut(s)	709
BseBI	CCWGG	3 cut(s)	53, 66, 79
BseDI	CCNNGG	3 cut(s)	78, 189, 249
BseGI	GGATG	1 cut(s)	631
BseLI	CCNNNNNNNGG	3 cut(s)	190, 250, 673
BseMI	GCAATG	1 cut(s)	709
BseMII	CTCAG	1 cut(s)	674
BseRI	GAGGAG	1 cut(s)	253
BsgI	GTGCAG	1 cut(s)	636
BshFI	GGCC	4 cut(s)	183, 298, 358, 606
BsiHKCI	CYCGRG	2 cut(s)	410, 608
BslFI	GGGAC	1 cut(s)	428
BslI	CCNNNNNNNGG	3 cut(s)	190, 250, 673
BsmFI	GGGAC	1 cut(s)	428
BsnI	GGCC	4 cut(s)	183, 298, 358, 606
BsoBI	CYCGRG	2 cut(s)	410, 608
Bsp119I	TTCGAA	1 cut(s)	435
Bsp143I	GATC	2 cut(s)	346, 391
BspACI	CCGC	3 cut(s)	103, 271, 280
BspANI	GGCC	4 cut(s)	183, 298, 358, 606
BspCNI	CTCAG	1 cut(s)	673
BspLI	GGNNCC	3 cut(s)	7, 207, 242
BspMI	ACCTGC	1 cut(s)	98
BspPI	GGATC	1 cut(s)	354
BspT104I	TTCGAA	1 cut(s)	435
BsrBI	CCGCTC	2 cut(s)	273, 282
BsrDI	GCAATG	1 cut(s)	709
BssECI	CCNNGG	3 cut(s)	78, 189, 249
BssMI	GATC	2 cut(s)	346, 391
BssT1I	CCWWGG	1 cut(s)	189
Bst2UI	CCWGG	3 cut(s)	53, 66, 79
Bst4CI	ACNGT	3 cut(s)	125, 250, 488
Bst6I	CTCTTC	2 cut(s)	519, 674
BstBI	TTCGAA	1 cut(s)	435
BstDEI	CTNAG	2 cut(s)	621, 660
BstDSI	CCRYGG	1 cut(s)	249
BstF5I	GGATG	1 cut(s)	631
BstKTI	GATC	2 cut(s)	349, 394
BstMBI	GATC	2 cut(s)	346, 391
BstMWI	GCNNNNNNNGC	2 cut(s)	116, 279
BstNI	CCWGG	3 cut(s)	53, 66, 79
BstSCI	CCNGG	3 cut(s)	51, 64, 77
BstX2I	RGATCY	2 cut(s)	346, 391
BstYI	RGATCY	2 cut(s)	346, 391
BsuI	GTATCC	1 cut(s)	441
BsuRI	GGCC	4 cut(s)	183, 298, 358, 606
BtgI	CCRYGG	1 cut(s)	249
BtrI	CACGTC	1 cut(s)	418
BtsCI	GGATG	1 cut(s)	631
BveI	ACCTGC	1 cut(s)	98
Cfr13I	GGNCC	1 cut(s)	262
CseI	GACGC	1 cut(s)	542
Csp6I	GTAC	2 cut(s)	142, 336
CspCI	CAANNNNNGTGG	2 cut(s)	565, 600
CviAII	CATG	7 cut(s)	10, 276, 294, 352, 593, 673, 720
CviQI	GTAC	2 cut(s)	142, 336
DdeI	CTNAG	2 cut(s)	621, 660
DpnI	GATC	2 cut(s)	348, 393
DpnII	GATC	2 cut(s)	346, 391
EaeI	YGGCCR	2 cut(s)	181, 296
Eam1104I	CTCTTC	2 cut(s)	519, 674
EarI	CTCTTC	2 cut(s)	519, 674
Eco130I	CCWWGG	1 cut(s)	189
Eco47I	GGWCC	1 cut(s)	262
Eco57I	CTGAAG	1 cut(s)	674
Eco88I	CYCGRG	2 cut(s)	410, 608
EcoRII	CCWGG	3 cut(s)	51, 64, 77
EcoT14I	CCWWGG	1 cut(s)	189
ErhI	CCWWGG	1 cut(s)	189
FaeI	CATG	7 cut(s)	13, 279, 297, 355, 596, 676, 723
FaqI	GGGAC	1 cut(s)	428
FatI	CATG	7 cut(s)	9, 275, 293, 351, 592, 672, 719
FauI	CCCGC	1 cut(s)	278
Fnu4HI	GCNGC	1 cut(s)	280
FokI	GGATG	1 cut(s)	638
Fsp4HI	GCNGC	1 cut(s)	280
FspBI	CTAG	2 cut(s)	113, 639
GluI	GCNGC	1 cut(s)	280
GsuI	CTGGAG	1 cut(s)	35
HaeIII	GGCC	4 cut(s)	183, 298, 358, 606
HgaI	GACGC	1 cut(s)	542
Hin1II	CATG	7 cut(s)	13, 279, 297, 355, 596, 676, 723
HindIII	AAGCTT	1 cut(s)	439
HinfI	GANTC	2 cut(s)	467, 647
HphI	GGTGA	3 cut(s)	565, 641, 692
Hpy188I	TCNGA	3 cut(s)	262, 552, 618
Hpy188III	TCNNGA	2 cut(s)	225, 445
HpyAV	CCTTC	2 cut(s)	283, 666
HpyCH4III	ACNGT	3 cut(s)	125, 250, 488
HpyCH4IV	ACGT	3 cut(s)	308, 338, 417
HpyCH4V	TGCA	3 cut(s)	93, 110, 653
HpyF10VI	GCNNNNNNNGC	2 cut(s)	116, 279
HpyF3I	CTNAG	2 cut(s)	621, 660
HpySE526I	ACGT	3 cut(s)	308, 338, 417
Hsp92II	CATG	7 cut(s)	13, 279, 297, 355, 596, 676, 723
Kzo9I	GATC	2 cut(s)	346, 391
LmnI	GCTCC	3 cut(s)	80, 240, 699
MaeI	CTAG	2 cut(s)	113, 639
MaeII	ACGT	3 cut(s)	308, 338, 417
MaeIII	GTNAC	1 cut(s)	530
MalI	GATC	2 cut(s)	348, 393
MbiI	CCGCTC	2 cut(s)	273, 282
MboI	GATC	2 cut(s)	346, 391
MboII	GAAGA	4 cut(s)	485, 488, 536, 661
MflI	RGATCY	2 cut(s)	346, 391
MlsI	TGGCCA	2 cut(s)	183, 298
MluCI	AATT	2 cut(s)	40, 374
MluNI	TGGCCA	2 cut(s)	183, 298
MlyI	GAGTC	1 cut(s)	656
MnlI	CCTC	7 cut(s)	59, 196, 220, 231, 604, 617, 677
Mox20I	TGGCCA	2 cut(s)	183, 298
MscI	TGGCCA	2 cut(s)	183, 298
Msp20I	TGGCCA	2 cut(s)	183, 298
MspR9I	CCNGG	3 cut(s)	53, 66, 79
MvaI	CCWGG	3 cut(s)	53, 66, 79
MwoI	GCNNNNNNNGC	2 cut(s)	116, 279
NdeII	GATC	2 cut(s)	346, 391
NlaIII	CATG	7 cut(s)	13, 279, 297, 355, 596, 676, 723
NlaIV	GGNNCC	3 cut(s)	7, 207, 242
NmuCI	GTSAC	1 cut(s)	530
NspV	TTCGAA	1 cut(s)	435
PaeR7I	CTCGAG	1 cut(s)	608
PaqCI	CACCTGC	1 cut(s)	98
PcsI	WCGNNNNNNNCGW	1 cut(s)	606
PfeI	GAWTC	1 cut(s)	467
PflFI	GACNNNGTC	1 cut(s)	307
PfoI	TCCNGGA	1 cut(s)	51
PkrI	GCNGC	1 cut(s)	281
PleI	GAGTC	1 cut(s)	655
PpsI	GAGTC	1 cut(s)	655
Psp6I	CCWGG	3 cut(s)	51, 64, 77
PspGI	CCWGG	3 cut(s)	51, 64, 77
PspN4I	GGNNCC	3 cut(s)	7, 207, 242
PspPI	GGNCC	1 cut(s)	262
PspXI	VCTCGAGB	1 cut(s)	608
PsuI	RGATCY	2 cut(s)	346, 391
PsyI	GACNNNGTC	1 cut(s)	307
RsaI	GTAC	2 cut(s)	143, 337
RsaNI	GTAC	2 cut(s)	142, 336
SatI	GCNGC	1 cut(s)	280
Sau3AI	GATC	2 cut(s)	346, 391
Sau96I	GGNCC	1 cut(s)	262
SchI	GAGTC	1 cut(s)	656
ScrFI	CCNGG	3 cut(s)	53, 66, 79
Sfr274I	CTCGAG	1 cut(s)	608
SfuI	TTCGAA	1 cut(s)	435
SinI	GGWCC	1 cut(s)	262
SlaI	CTCGAG	1 cut(s)	608
SmlI	CTYRAG	3 cut(s)	70, 506, 608
SmoI	CTYRAG	3 cut(s)	70, 506, 608
SpeI	ACTAGT	1 cut(s)	638
Sse9I	AATT	2 cut(s)	40, 374
SsiI	CCGC	3 cut(s)	103, 271, 280
SspMI	CTAG	2 cut(s)	113, 639
StyD4I	CCNGG	3 cut(s)	51, 64, 77
StyI	CCWWGG	1 cut(s)	189
TaaI	ACNGT	3 cut(s)	125, 250, 488
TaiI	ACGT	3 cut(s)	311, 341, 420
TaqI	TCGA	4 cut(s)	201, 212, 435, 609
TasI	AATT	2 cut(s)	40, 374
TauI	GCSGC	1 cut(s)	282
TfiI	GAWTC	1 cut(s)	467
TseFI	GTSAC	1 cut(s)	530
Tsp45I	GTSAC	1 cut(s)	530
TspDTI	ATGAA	3 cut(s)	302, 480, 661
TspGWI	ACGGA	2 cut(s)	378, 575
Tth111I	GACNNNGTC	1 cut(s)	307
VpaK11BI	GGWCC	1 cut(s)	262
XapI	RAATTY	1 cut(s)	374
XhoI	CTCGAG	1 cut(s)	608
XspI	CTAG	2 cut(s)	113, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.