Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001604

Physical Location & Seq

Genomic Coordinates Forward (+)

19206453 .. 19208461

Gene Structure 2009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G263100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGGTTCCCTAACAACAGCGCATAAGCTTCCTACCATCAACTTCTCCATTGAAGACTTGAAGCCTGGCTCAGCTTCTTGGTTGTCTACCGCCAAACAAGTCCGGTTTGCACTCGAAGAATACGGCTCTTTCGTGGCACAATATGATCAAATTTCTGCTGAACTTTTAAACAACATGTTTGGCCAAGCCAAAGATTTGTTTGAGGTTCCCAAAGAAAACAAAGTGAAGAACGTTGGTGACGAACCCTATCGTGGGCATATGGGTCCAAACCCCCTCCTGCCACTCTATGAAAGCTTGTGCATCGACAATGTCACATCCCCACAAGAAACCCAAAAGTTCAAAAATCTCATGTGGCCTGAGGGAAAGAGCAACTTCTGTGAAACCACAGATTCATTTGGGCAGTTATTGGCAAATTTGGAACGCACAGTTGAGCAACTGCTATTCGAAGGCTATGGGATTGGAAAGCAGTACGAGTCGGTTGGTAGTTCCAACGGTCACCTTCTTAGATTCATCAGATATACAGTACCAGAGGACAAGGATGCCACCGTAAGGTTTCCGAGCCACACAGACATAAACTTCACCACCATTGTTGTTCAGCATGATATCGCTGGCTTGGAGATCAAAACAAAGGAAGGTGATTGGATTAATGTTGAGTGTGCACCCTCACAAGCACAGTTCGTATTCATGGCGGGTGATGGACTGCAGGTGTGGAGCAATGACAGAGTGAAAGCTTGCCACCACAGAGTAAAGCATTGTGGAGACAAGACAAGATACTCAATTGGGATGTTCACATTCAACAATGGGATTTTCCAAGTGCCGGAAGAACTAGTAGACGAAAGCCACCCACTGCTCTATAACGCATTTGATAGCCGTGCCTTTATTCGAAAATATGCTACAACTCCAGAGCTGAAGAAGGCCGCGTGTCCGATCAAGGCCTTTGCCGGTGTCAAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

319

Amino Acids

35.72

Weight (kDa)

5.88

Isoelectric Point (pI)

31.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001604)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28210 FvH4_6g42700 FvH4_7g15780
malus_domestica	MD03G1085000.v1.1 MD05G1208700.v1.1 MD10G1195200.v1.1 MD11G1092600.v1.1
prunus_persica	Prupe.4G262900_v2.0.a1 Prupe.4G263000_v2.0.a1 Prupe.4G263100_v2.0.a1 Prupe.4G264400_v2.0.a1
pyrus_communis	pycom03g06720 pycom05g19460 pycom10g16890 pycom11g07800 pycom11g07820
rosa_chinensis	RchiOBHm_Chr1g0358581 RchiOBHm_Chr4g0395841 RchiOBHm_Chr4g0444921 RchiOBHm_Chr5g0050321 RchiOBHm_Chr5g0050341
rosa_laevigata	RLG00000027944 RLG00000034696 RLG00000034697 RLG00000034698
rosa_multiflora	Rmu_sc0001103.1_g000025 Rmu_sc0001609.1_g000014 Rmu_sc0005060.1_g000004 Rmu_sc0005060.1_g000006
rosa_roxburghii	Rroxscaffold_1G00027250 Rroxscaffold_1G00030670 Rroxscaffold_1G00030700 Rroxscaffold_4G00297680 Rroxscaffold_4G00297780
rosa_rugosa	Rorug01G0262600 Rorug01G0262700 Rorug05G0260000 Rorug05G0260000 Rorug05G0260100
rosa_samantha	Rh1BG243900 Rh1CG260900 Rh4BG429600 Rh4DG425500 Rh5AG331700 Rh5AG331800 Rh5CG369400 Rh5CG369500
rosa_wichuraiana	Rw1G024650 Rw5G031370 Rw5G031380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	694
Acc36I	ACCTGC	1 cut(s)	694
AccI	GTMKAC	2 cut(s)	86, 831
AccII	CGCG	1 cut(s)	920
AciI	CCGC	3 cut(s)	90, 689, 918
AclI	AACGTT	1 cut(s)	231
AcoI	YGGCCR	1 cut(s)	181
AcsI	RAATTY	2 cut(s)	150, 412
AcuI	CTGAAG	1 cut(s)	929
AfaI	GTAC	2 cut(s)	470, 525
AfiI	CCNNNNNNNGG	4 cut(s)	251, 252, 549, 817
AflIII	ACRYGT	1 cut(s)	174
AgsI	TTSAA	4 cut(s)	53, 61, 340, 796
AhlI	ACTAGT	1 cut(s)	826
AjnI	CCWGG	1 cut(s)	64
AluBI	AGCT	6 cut(s)	28, 74, 294, 731, 907, 953
AluI	AGCT	6 cut(s)	28, 74, 294, 731, 907, 953
Alw21I	GWGCWC	1 cut(s)	661
Alw26I	GTCTC	1 cut(s)	753
Alw44I	GTGCAC	1 cut(s)	657
AoxI	GGCC	4 cut(s)	181, 353, 915, 933
ApaLI	GTGCAC	1 cut(s)	657
ApoI	RAATTY	2 cut(s)	150, 412
AseI	ATTAAT	1 cut(s)	645
AspLEI	GCGC	1 cut(s)	22
AspS9I	GGNCC	1 cut(s)	263
AsuHPI	GGTGA	5 cut(s)	248, 488, 571, 647, 704
AsuII	TTCGAA	2 cut(s)	444, 883
AvaII	GGWCC	1 cut(s)	263
AxyI	CCTNAGG	1 cut(s)	357
BaeGI	GKGCMC	1 cut(s)	661
BalI	TGGCCA	1 cut(s)	183
BbsI	GAAGAC	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	661
BccI	CCATC	2 cut(s)	44, 689
BceAI	ACGGC	2 cut(s)	139, 855
BciT130I	CCWGG	1 cut(s)	66
BclI	TGATCA	1 cut(s)	145
BcoDI	GTCTC	1 cut(s)	753
BcuI	ACTAGT	1 cut(s)	826
BfaI	CTAG	1 cut(s)	827
BfmI	CTRYAG	1 cut(s)	701
BfuAI	ACCTGC	1 cut(s)	694
BisI	GCNGC	1 cut(s)	918
BlpI	GCTNAGC	1 cut(s)	70
BlsI	GCNGC	1 cut(s)	919
Bme1390I	CCNGG	1 cut(s)	66
Bme18I	GGWCC	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	263
BmiI	GGNNCC	3 cut(s)	7, 207, 264
BmrFI	CCNGG	1 cut(s)	66
BmsI	GCATC	2 cut(s)	309, 529
BpiI	GAAGAC	1 cut(s)	60
BpmI	CTGGAG	1 cut(s)	885
Bpu1102I	GCTNAGC	1 cut(s)	70
Bpu14I	TTCGAA	2 cut(s)	444, 883
BsaWI	WCCGGW	1 cut(s)	102
Bsc4I	CCNNNNNNNGG	4 cut(s)	251, 252, 549, 817
Bse118I	RCCGGY	1 cut(s)	941
Bse21I	CCTNAGG	1 cut(s)	357
Bse3DI	GCAATG	1 cut(s)	721
BseBI	CCWGG	1 cut(s)	66
BseGI	GGATG	3 cut(s)	314, 544, 789
BseLI	CCNNNNNNNGG	4 cut(s)	251, 252, 549, 817
BseMI	GCAATG	1 cut(s)	721
BseMII	CTCAG	2 cut(s)	84, 348
BseSI	GKGCMC	1 cut(s)	661
Bsh1236I	CGCG	1 cut(s)	920
BshFI	GGCC	4 cut(s)	183, 355, 917, 935
BsiHKAI	GWGCWC	1 cut(s)	661
BsiSI	CCGG	3 cut(s)	103, 818, 942
BslI	CCNNNNNNNGG	4 cut(s)	251, 252, 549, 817
BsmAI	GTCTC	1 cut(s)	753
BsnI	GGCC	4 cut(s)	183, 355, 917, 935
Bsp119I	TTCGAA	2 cut(s)	444, 883
Bsp1286I	GDGCHC	1 cut(s)	661
Bsp143I	GATC	3 cut(s)	145, 618, 927
Bsp1720I	GCTNAGC	1 cut(s)	70
BspACI	CCGC	3 cut(s)	90, 689, 918
BspANI	GGCC	4 cut(s)	183, 355, 917, 935
BspCNI	CTCAG	2 cut(s)	83, 349
BspFNI	CGCG	1 cut(s)	920
BspLI	GGNNCC	3 cut(s)	7, 207, 264
BspMAI	CTGCAG	1 cut(s)	705
BspMI	ACCTGC	1 cut(s)	694
BspT104I	TTCGAA	2 cut(s)	444, 883
BsrDI	GCAATG	1 cut(s)	721
BsrFI	RCCGGY	1 cut(s)	941
BssAI	RCCGGY	1 cut(s)	941
BssMI	GATC	3 cut(s)	145, 618, 927
Bst2UI	CCWGG	1 cut(s)	66
Bst4CI	ACNGT	5 cut(s)	427, 494, 523, 547, 675
BstBI	TTCGAA	2 cut(s)	444, 883
BstC8I	GCNNGC	2 cut(s)	610, 733
BstDEI	CTNAG	3 cut(s)	70, 357, 503
BstEII	GGTNACC	1 cut(s)	494
BstF5I	GGATG	3 cut(s)	314, 544, 789
BstFNI	CGCG	1 cut(s)	920
BstHHI	GCGC	1 cut(s)	22
BstKTI	GATC	3 cut(s)	148, 621, 930
BstMAI	GTCTC	1 cut(s)	753
BstMBI	GATC	3 cut(s)	145, 618, 927
BstNI	CCWGG	1 cut(s)	66
BstNSI	RCATGY	1 cut(s)	178
BstPI	GGTNACC	1 cut(s)	494
BstSCI	CCNGG	1 cut(s)	64
BstSFI	CTRYAG	1 cut(s)	701
BstSLI	GKGCMC	1 cut(s)	661
BstUI	CGCG	1 cut(s)	920
BstV2I	GAAGAC	1 cut(s)	60
Bsu36I	CCTNAGG	1 cut(s)	357
BsuRI	GGCC	4 cut(s)	183, 355, 917, 935
BtsCI	GGATG	3 cut(s)	314, 544, 789
BtsI	GCAGTG	1 cut(s)	845
BtsIMutI	CAGTG	1 cut(s)	845
BveI	ACCTGC	1 cut(s)	694
Cac8I	GCNNGC	2 cut(s)	610, 733
CfoI	GCGC	1 cut(s)	22
Cfr10I	RCCGGY	1 cut(s)	941
Cfr13I	GGNCC	1 cut(s)	263
Csp6I	GTAC	2 cut(s)	469, 524
CspCI	CAANNNNNGTGG	2 cut(s)	571, 606
CviAII	CATG	4 cut(s)	175, 349, 599, 685
CviQI	GTAC	2 cut(s)	469, 524
DdeI	CTNAG	3 cut(s)	70, 357, 503
DpnI	GATC	3 cut(s)	147, 620, 929
DpnII	GATC	3 cut(s)	145, 618, 927
DraI	TTTAAA	1 cut(s)	168
EaeI	YGGCCR	1 cut(s)	181
Eco147I	AGGCCT	1 cut(s)	935
Eco32I	GATATC	1 cut(s)	604
Eco47I	GGWCC	1 cut(s)	263
Eco57I	CTGAAG	1 cut(s)	929
Eco81I	CCTNAGG	1 cut(s)	357
Eco91I	GGTNACC	1 cut(s)	494
EcoO65I	GGTNACC	1 cut(s)	494
EcoRII	CCWGG	1 cut(s)	64
EcoRV	GATATC	1 cut(s)	604
FaeI	CATG	4 cut(s)	178, 352, 602, 688
FalI	AAGNNNNNCTT	2 cut(s)	356, 388
FatI	CATG	4 cut(s)	174, 348, 598, 684
FauI	CCCGC	1 cut(s)	682
FauNDI	CATATG	1 cut(s)	258
FbaI	TGATCA	1 cut(s)	145
FblI	GTMKAC	2 cut(s)	86, 831
Fnu4HI	GCNGC	1 cut(s)	918
FokI	GGATG	3 cut(s)	301, 551, 796
Fsp4HI	GCNGC	1 cut(s)	918
FspBI	CTAG	1 cut(s)	827
GlaI	GCGC	1 cut(s)	21
GluI	GCNGC	1 cut(s)	918
GsuI	CTGGAG	1 cut(s)	885
HaeIII	GGCC	4 cut(s)	183, 355, 917, 935
HapII	CCGG	3 cut(s)	103, 818, 942
HhaI	GCGC	1 cut(s)	22
Hin1II	CATG	4 cut(s)	178, 352, 602, 688
Hin6I	GCGC	1 cut(s)	20
HinP1I	GCGC	1 cut(s)	20
HindIII	AAGCTT	4 cut(s)	26, 292, 729, 951
HinfI	GANTC	3 cut(s)	389, 473, 507
HpaII	CCGG	3 cut(s)	103, 818, 942
HphI	GGTGA	5 cut(s)	248, 488, 571, 647, 704
Hpy166II	GTNNAC	4 cut(s)	87, 659, 789, 832
Hpy188I	TCNGA	3 cut(s)	515, 558, 927
Hpy188III	TCNNGA	1 cut(s)	902
Hpy8I	GTNNAC	4 cut(s)	87, 659, 789, 832
HpyAV	CCTTC	4 cut(s)	440, 509, 626, 907
HpyCH4III	ACNGT	5 cut(s)	427, 494, 523, 547, 675
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	4 cut(s)	110, 300, 659, 703
HpyF3I	CTNAG	3 cut(s)	70, 357, 503
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	4 cut(s)	178, 352, 602, 688
HspAI	GCGC	1 cut(s)	20
Ksp22I	TGATCA	1 cut(s)	145
Kzo9I	GATC	3 cut(s)	145, 618, 927
LmnI	GCTCC	1 cut(s)	711
LweI	GCATC	2 cut(s)	309, 529
MaeI	CTAG	1 cut(s)	827
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	3 cut(s)	236, 310, 494
MalI	GATC	3 cut(s)	147, 620, 929
MboI	GATC	3 cut(s)	145, 618, 927
MboII	GAAGA	5 cut(s)	65, 128, 238, 833, 922
MfeI	CAATTG	1 cut(s)	777
MhlI	GDGCHC	1 cut(s)	661
MlsI	TGGCCA	1 cut(s)	183
MluCI	AATT	3 cut(s)	150, 412, 777
MluNI	TGGCCA	1 cut(s)	183
MlyI	GAGTC	1 cut(s)	482
MmeI	TCCRAC	1 cut(s)	513
MnlI	CCTC	5 cut(s)	196, 284, 352, 523, 673
Mox20I	TGGCCA	1 cut(s)	183
MscI	TGGCCA	1 cut(s)	183
MseI	TTAA	3 cut(s)	167, 645, 955
Msp20I	TGGCCA	1 cut(s)	183
MspI	CCGG	3 cut(s)	103, 818, 942
MspR9I	CCNGG	1 cut(s)	66
MunI	CAATTG	1 cut(s)	777
MvaI	CCWGG	1 cut(s)	66
MvnI	CGCG	1 cut(s)	920
NdeI	CATATG	1 cut(s)	258
NdeII	GATC	3 cut(s)	145, 618, 927
NlaIII	CATG	4 cut(s)	178, 352, 602, 688
NlaIV	GGNNCC	3 cut(s)	7, 207, 264
NmuCI	GTSAC	3 cut(s)	236, 310, 494
NspI	RCATGY	1 cut(s)	178
NspV	TTCGAA	2 cut(s)	444, 883
PaqCI	CACCTGC	1 cut(s)	694
PceI	AGGCCT	1 cut(s)	935
PciI	ACATGT	1 cut(s)	174
PcsI	WCGNNNNNNNCGW	2 cut(s)	129, 237
PfeI	GAWTC	2 cut(s)	389, 507
PflFI	GACNNNGTC	1 cut(s)	308
PkrI	GCNGC	1 cut(s)	919
PleI	GAGTC	1 cut(s)	481
PpsI	GAGTC	1 cut(s)	481
PscI	ACATGT	1 cut(s)	174
PshBI	ATTAAT	1 cut(s)	645
Psp1406I	AACGTT	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	64
PspEI	GGTNACC	1 cut(s)	494
PspGI	CCWGG	1 cut(s)	64
PspN4I	GGNNCC	3 cut(s)	7, 207, 264
PspPI	GGNCC	1 cut(s)	263
PstI	CTGCAG	1 cut(s)	705
PsyI	GACNNNGTC	1 cut(s)	308
RsaI	GTAC	2 cut(s)	470, 525
RsaNI	GTAC	2 cut(s)	469, 524
SaqAI	TTAA	3 cut(s)	167, 645, 955
SatI	GCNGC	1 cut(s)	918
Sau3AI	GATC	3 cut(s)	145, 618, 927
Sau96I	GGNCC	1 cut(s)	263
SchI	GAGTC	1 cut(s)	482
ScrFI	CCNGG	1 cut(s)	66
SduI	GDGCHC	1 cut(s)	661
SfaNI	GCATC	2 cut(s)	309, 529
SfcI	CTRYAG	1 cut(s)	701
SfuI	TTCGAA	2 cut(s)	444, 883
SinI	GGWCC	1 cut(s)	263
SpeI	ACTAGT	1 cut(s)	826
Sse9I	AATT	3 cut(s)	150, 412, 777
SseBI	AGGCCT	1 cut(s)	935
SsiI	CCGC	3 cut(s)	90, 689, 918
SspMI	CTAG	1 cut(s)	827
StuI	AGGCCT	1 cut(s)	935
StyD4I	CCNGG	1 cut(s)	64
TaaI	ACNGT	5 cut(s)	427, 494, 523, 547, 675
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	4 cut(s)	114, 303, 444, 883
TasI	AATT	3 cut(s)	150, 412, 777
TauI	GCSGC	1 cut(s)	920
TfiI	GAWTC	2 cut(s)	389, 507
Tru1I	TTAA	3 cut(s)	167, 645, 955
Tru9I	TTAA	3 cut(s)	167, 645, 955
TscAI	CASTG	1 cut(s)	852
TseFI	GTSAC	3 cut(s)	236, 310, 494
Tsp45I	GTSAC	3 cut(s)	236, 310, 494
TspDTI	ATGAA	4 cut(s)	303, 381, 499, 673
TspRI	CASTG	1 cut(s)	852
Tth111I	GACNNNGTC	1 cut(s)	308
VneI	GTGCAC	1 cut(s)	657
VpaK11BI	GGWCC	1 cut(s)	263
VspI	ATTAAT	1 cut(s)	645
XapI	RAATTY	2 cut(s)	150, 412
XceI	RCATGY	1 cut(s)	178
XmiI	GTMKAC	2 cut(s)	86, 831
XspI	CTAG	1 cut(s)	827

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.