Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001604

Physical Location & Seq

Genomic Coordinates Forward (+)

29305222 .. 29309382

Gene Structure 4161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0260000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGCTCGCGACTATTGTGCATCCTTTATTAGGGTTTCGATTTCAATATCTGGAATTCGTTTCTGCTTCATCTCATGGCTTCGATTCTAAATTTCTGACTATGGCCCGCCTCATATCCAAGCATGCCTGGCTCTACACTGAGATGCTTGCTGCCGAAACCATTGTCTATCAGAAGGACAATCTGGACAGATTCTTGTACTTTCCTTCAGAACAGCATCCTATTGTTCTAGAAATTGGTGGCAGTAATTCAGAAAACCTGGCAAAAGCTACTCAACTTGCTAATATTTACAAATATGATGGGATCAATTTTAAATACGAGTACTTTTATGGCCTCTTGCGTGACTTAAACACTATTGATGAGGTCAATGCAGCTAGGAAAGCAGGAGCTCATGGTGTAATGGTTAATCTGCTCTATGATATACGATTTCTTTATGGGAAATGGTTGGCATGTGACATCATATCAAGCTATCATCAGCCCCTTCAAGTACGCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

164

Amino Acids

18.94

Weight (kDa)

6.58

Isoelectric Point (pI)

30.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dus	PF01207	27 - 102	4.8e-08	Dihydrouridine synthase (Dus)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001604)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28210 FvH4_6g42700 FvH4_7g15780
malus_domestica	MD03G1085000.v1.1 MD05G1208700.v1.1 MD10G1195200.v1.1 MD11G1092600.v1.1
prunus_persica	Prupe.4G262900_v2.0.a1 Prupe.4G263000_v2.0.a1 Prupe.4G263100_v2.0.a1 Prupe.4G264400_v2.0.a1
pyrus_communis	pycom03g06720 pycom05g19460 pycom10g16890 pycom11g07800 pycom11g07820
rosa_chinensis	RchiOBHm_Chr1g0358581 RchiOBHm_Chr4g0395841 RchiOBHm_Chr4g0444921 RchiOBHm_Chr5g0050321 RchiOBHm_Chr5g0050341
rosa_laevigata	RLG00000027944 RLG00000034696 RLG00000034697 RLG00000034698
rosa_multiflora	Rmu_sc0001103.1_g000025 Rmu_sc0001609.1_g000014 Rmu_sc0005060.1_g000004 Rmu_sc0005060.1_g000006
rosa_roxburghii	Rroxscaffold_1G00027250 Rroxscaffold_1G00030670 Rroxscaffold_1G00030700 Rroxscaffold_4G00297680 Rroxscaffold_4G00297780
rosa_rugosa	Rorug01G0262600 Rorug01G0262700 Rorug05G0260000 Rorug05G0260000 Rorug05G0260100
rosa_samantha	Rh1BG243900 Rh1CG260900 Rh4BG429600 Rh4DG425500 Rh5AG331700 Rh5AG331800 Rh5CG369400 Rh5CG369500
rosa_wichuraiana	Rw1G024650 Rw5G031370 Rw5G031380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	8
AciI	CCGC	1 cut(s)	106
AclWI	GGATC	1 cut(s)	308
AcsI	RAATTY	2 cut(s)	53, 89
AcuI	CTGAAG	1 cut(s)	189
AfaI	GTAC	3 cut(s)	197, 320, 486
AfiI	CCNNNNNNNGG	1 cut(s)	29
AgsI	TTSAA	2 cut(s)	44, 482
AjnI	CCWGG	2 cut(s)	125, 255
AluBI	AGCT	4 cut(s)	266, 371, 386, 465
AluI	AGCT	4 cut(s)	266, 371, 386, 465
Alw21I	GWGCWC	1 cut(s)	388
AlwI	GGATC	1 cut(s)	308
AoxI	GGCC	2 cut(s)	102, 328
ApeKI	GCWGC	2 cut(s)	149, 368
ApoI	RAATTY	2 cut(s)	53, 89
ArsI	GACNNNNNNTTYG	2 cut(s)	147, 179
AspS9I	GGNCC	1 cut(s)	103
BanII	GRGCYC	1 cut(s)	388
Bbv12I	GWGCWC	1 cut(s)	388
BbvI	GCAGC	2 cut(s)	136, 380
BccI	CCATC	1 cut(s)	290
BcgI	CGANNNNNNTGC	1 cut(s)	32
BciT130I	CCWGG	2 cut(s)	127, 257
BfaI	CTAG	2 cut(s)	227, 372
BisI	GCNGC	2 cut(s)	150, 369
BlsI	GCNGC	2 cut(s)	151, 370
BmcAI	AGTACT	1 cut(s)	320
Bme1390I	CCNGG	2 cut(s)	127, 257
BmgT120I	GGNCC	1 cut(s)	103
BmrFI	CCNGG	2 cut(s)	127, 257
BmsI	GCATC	3 cut(s)	28, 132, 223
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
BseBI	CCWGG	2 cut(s)	127, 257
BseGI	GGATG	2 cut(s)	19, 214
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseMII	CTCAG	1 cut(s)	129
BseXI	GCAGC	2 cut(s)	136, 380
Bsh1236I	CGCG	1 cut(s)	8
BshFI	GGCC	2 cut(s)	104, 330
BsiHKAI	GWGCWC	1 cut(s)	388
BslI	CCNNNNNNNGG	1 cut(s)	29
BsnI	GGCC	2 cut(s)	104, 330
Bsp1286I	GDGCHC	1 cut(s)	388
Bsp143I	GATC	1 cut(s)	300
Bsp68I	TCGCGA	1 cut(s)	8
BspACI	CCGC	1 cut(s)	106
BspANI	GGCC	2 cut(s)	104, 330
BspCNI	CTCAG	1 cut(s)	130
BspFNI	CGCG	1 cut(s)	8
BspPI	GGATC	1 cut(s)	308
BssMI	GATC	1 cut(s)	300
Bst2UI	CCWGG	2 cut(s)	127, 257
BstC8I	GCNNGC	4 cut(s)	6, 106, 123, 147
BstDEI	CTNAG	1 cut(s)	138
BstENI	CCTNNNNNAGG	1 cut(s)	27
BstF5I	GGATG	2 cut(s)	19, 214
BstFNI	CGCG	1 cut(s)	8
BstKTI	GATC	1 cut(s)	303
BstMBI	GATC	1 cut(s)	300
BstMWI	GCNNNNNNNGC	2 cut(s)	127, 377
BstNI	CCWGG	2 cut(s)	127, 257
BstNSI	RCATGY	3 cut(s)	125, 450, 493
BstSCI	CCNGG	2 cut(s)	125, 255
BstUI	CGCG	1 cut(s)	8
BstV1I	GCAGC	2 cut(s)	136, 380
BsuRI	GGCC	2 cut(s)	104, 330
BtsCI	GGATG	2 cut(s)	19, 214
BtsIMutI	CAGTG	1 cut(s)	135
BtuMI	TCGCGA	1 cut(s)	8
Cac8I	GCNNGC	4 cut(s)	6, 106, 123, 147
Cfr13I	GGNCC	1 cut(s)	103
Csp6I	GTAC	3 cut(s)	196, 319, 485
CviAII	CATG	5 cut(s)	74, 122, 389, 447, 490
CviJI	RGCY	9 cut(s)	78, 104, 130, 266, 330, 371, 386, 465, 475
CviKI_1	RGCY	9 cut(s)	78, 104, 130, 266, 330, 371, 386, 465, 475
CviQI	GTAC	3 cut(s)	196, 319, 485
DdeI	CTNAG	1 cut(s)	138
DpnI	GATC	1 cut(s)	302
DpnII	GATC	1 cut(s)	300
DraI	TTTAAA	1 cut(s)	310
Ecl136II	GAGCTC	1 cut(s)	386
Eco24I	GRGCYC	1 cut(s)	388
Eco53kI	GAGCTC	1 cut(s)	386
Eco57I	CTGAAG	1 cut(s)	189
EcoICRI	GAGCTC	1 cut(s)	386
EcoNI	CCTNNNNNAGG	1 cut(s)	27
EcoRI	GAATTC	1 cut(s)	53
EcoRII	CCWGG	2 cut(s)	125, 255
EcoT38I	GRGCYC	1 cut(s)	388
FaeI	CATG	5 cut(s)	77, 125, 392, 450, 493
FatI	CATG	5 cut(s)	73, 121, 388, 446, 489
FauI	CCCGC	1 cut(s)	113
Fnu4HI	GCNGC	2 cut(s)	150, 369
FokI	GGATG	2 cut(s)	6, 201
FriOI	GRGCYC	1 cut(s)	388
Fsp4HI	GCNGC	2 cut(s)	150, 369
FspBI	CTAG	2 cut(s)	227, 372
GluI	GCNGC	2 cut(s)	150, 369
HaeIII	GGCC	2 cut(s)	104, 330
Hin1II	CATG	5 cut(s)	77, 125, 392, 450, 493
HinfI	GANTC	2 cut(s)	83, 189
Hpy188I	TCNGA	4 cut(s)	96, 171, 208, 250
Hpy188III	TCNNGA	4 cut(s)	7, 50, 182, 227
HpyAV	CCTTC	3 cut(s)	166, 213, 488
HpyCH4V	TGCA	2 cut(s)	19, 368
HpyF10VI	GCNNNNNNNGC	2 cut(s)	127, 377
HpyF3I	CTNAG	1 cut(s)	138
Hsp92II	CATG	5 cut(s)	77, 125, 392, 450, 493
Kzo9I	GATC	1 cut(s)	300
LmnI	GCTCC	1 cut(s)	383
LpnPI	CCDG	7 cut(s)	35, 112, 139, 167, 242, 269, 366
Lsp1109I	GCAGC	2 cut(s)	136, 380
LweI	GCATC	3 cut(s)	28, 132, 223
MaeI	CTAG	2 cut(s)	227, 372
MaeIII	GTNAC	2 cut(s)	338, 449
MalI	GATC	1 cut(s)	302
MboI	GATC	1 cut(s)	300
MhlI	GDGCHC	1 cut(s)	388
MluCI	AATT	5 cut(s)	53, 89, 231, 244, 304
MnlI	CCTC	3 cut(s)	119, 341, 352
MseI	TTAA	3 cut(s)	309, 344, 402
MslI	CAYNNNNRTG	1 cut(s)	140
MspR9I	CCNGG	2 cut(s)	127, 257
MvaI	CCWGG	2 cut(s)	127, 257
MvnI	CGCG	1 cut(s)	8
MwoI	GCNNNNNNNGC	2 cut(s)	127, 377
NdeII	GATC	1 cut(s)	300
NlaIII	CATG	5 cut(s)	77, 125, 392, 450, 493
NmuCI	GTSAC	2 cut(s)	338, 449
NruI	TCGCGA	1 cut(s)	8
NspI	RCATGY	3 cut(s)	125, 450, 493
PaeI	GCATGC	1 cut(s)	125
PfeI	GAWTC	2 cut(s)	83, 189
PkrI	GCNGC	2 cut(s)	151, 370
Psp124BI	GAGCTC	1 cut(s)	388
Psp6I	CCWGG	2 cut(s)	125, 255
PspGI	CCWGG	2 cut(s)	125, 255
PspPI	GGNCC	1 cut(s)	103
RruI	TCGCGA	1 cut(s)	8
RsaI	GTAC	3 cut(s)	197, 320, 486
RsaNI	GTAC	3 cut(s)	196, 319, 485
RseI	CAYNNNNRTG	1 cut(s)	140
SacI	GAGCTC	1 cut(s)	388
SaqAI	TTAA	3 cut(s)	309, 344, 402
SatI	GCNGC	2 cut(s)	150, 369
Sau3AI	GATC	1 cut(s)	300
Sau96I	GGNCC	1 cut(s)	103
ScaI	AGTACT	1 cut(s)	320
ScrFI	CCNGG	2 cut(s)	127, 257
SduI	GDGCHC	1 cut(s)	388
SetI	ASST	6 cut(s)	258, 268, 363, 373, 388, 467
SfaNI	GCATC	3 cut(s)	28, 132, 223
SmiMI	CAYNNNNRTG	1 cut(s)	140
SphI	GCATGC	1 cut(s)	125
Sse9I	AATT	5 cut(s)	53, 89, 231, 244, 304
SsiI	CCGC	1 cut(s)	106
SspI	AATATT	1 cut(s)	283
SspMI	CTAG	2 cut(s)	227, 372
SstI	GAGCTC	1 cut(s)	388
StyD4I	CCNGG	2 cut(s)	125, 255
TaqI	TCGA	2 cut(s)	37, 81
TasI	AATT	5 cut(s)	53, 89, 231, 244, 304
TatI	WGTACW	2 cut(s)	195, 318
TfiI	GAWTC	2 cut(s)	83, 189
Tru1I	TTAA	3 cut(s)	309, 344, 402
Tru9I	TTAA	3 cut(s)	309, 344, 402
TscAI	CASTG	1 cut(s)	142
TseFI	GTSAC	2 cut(s)	338, 449
TseI	GCWGC	2 cut(s)	149, 368
Tsp45I	GTSAC	2 cut(s)	338, 449
TspDTI	ATGAA	1 cut(s)	57
TspRI	CASTG	1 cut(s)	142
XagI	CCTNNNNNAGG	1 cut(s)	27
XapI	RAATTY	2 cut(s)	53, 89
XbaI	TCTAGA	1 cut(s)	226
XceI	RCATGY	3 cut(s)	125, 450, 493
XspI	CTAG	2 cut(s)	227, 372
ZrmI	AGTACT	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.