Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005060.1

Orthogroup ID

OG0001604

Physical Location & Seq

Genomic Coordinates Forward (+)

46514 .. 47987

Gene Structure 1474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005060.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

atgacagttcccaaagagcttcccaccatcaatttctccctccaggacttgaagcctggctcaagctcctgggcttccacctgcaaacaaatccgctatgcactcgaagaatacggttgctttgtggcattgtaccaacaagtttccccacagcttatggacaatatcttcggccaatccaaggatttgttcgaggttcccctcaaaaacaaagtcaagaacaccagcgatgagccttaccgtggctatatcggaccaaacccgctcatgccgctctatgaaggcatggccattgacaacgtcacatccccacaagaaactcaaaagttcagggatctcatgtggcctaacggaaagaccaaattctgcgaaatcacagatctatttgccaagttgctcggggacttggaaaacactgtggaaaagatgttgttcgaaagcttcgggataccccaagagcaatatgaatcgttggcgagttcaaacagtcatcttcttcgttttctcaagtacaggacaccagaagagagtgacgcaaacatcaggtttccgagccacacggacaagaacttcaccaccattgttgttcagcatgatgtcggtggcctcgaggttctgactaaggatggtgattggattagtgttgagtctgcaccttctcagttcctcttcatggctggtgatggacttcaggtatggagcaatgacagaataaaagcatgccagcatcgagtgaagcactgcggagacaagactcgatactcgctgggaatgtttacgtttaacaatggagtattccaagtgcccaaagagttagtagacgacagccacccactcctctacaagcagttcgacagtcgtggtttcataagattttacaccacaccggaggctaagaagtcagagtcgcccatcaaagcgtactgcggtgttaaaaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

313

Amino Acids

35.68

Weight (kDa)

5.93

Isoelectric Point (pI)

39.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001604)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28210 FvH4_6g42700 FvH4_7g15780
malus_domestica	MD03G1085000.v1.1 MD05G1208700.v1.1 MD10G1195200.v1.1 MD11G1092600.v1.1
prunus_persica	Prupe.4G262900_v2.0.a1 Prupe.4G263000_v2.0.a1 Prupe.4G263100_v2.0.a1 Prupe.4G264400_v2.0.a1
pyrus_communis	pycom03g06720 pycom05g19460 pycom10g16890 pycom11g07800 pycom11g07820
rosa_chinensis	RchiOBHm_Chr1g0358581 RchiOBHm_Chr4g0395841 RchiOBHm_Chr4g0444921 RchiOBHm_Chr5g0050321 RchiOBHm_Chr5g0050341
rosa_laevigata	RLG00000027944 RLG00000034696 RLG00000034697 RLG00000034698
rosa_multiflora	Rmu_sc0001103.1_g000025 Rmu_sc0001609.1_g000014 Rmu_sc0005060.1_g000004 Rmu_sc0005060.1_g000006
rosa_roxburghii	Rroxscaffold_1G00027250 Rroxscaffold_1G00030670 Rroxscaffold_1G00030700 Rroxscaffold_4G00297680 Rroxscaffold_4G00297780
rosa_rugosa	Rorug01G0262600 Rorug01G0262700 Rorug05G0260000 Rorug05G0260000 Rorug05G0260100
rosa_samantha	Rh1BG243900 Rh1CG260900 Rh4BG429600 Rh4DG425500 Rh5AG331700 Rh5AG331800 Rh5CG369400 Rh5CG369500
rosa_wichuraiana	Rw1G024650 Rw5G031370 Rw5G031380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	89
AbsI	CCTCGAGG	1 cut(s)	608
Acc36I	ACCTGC	1 cut(s)	89
AccBSI	CCGCTC	2 cut(s)	265, 274
AccI	GTMKAC	1 cut(s)	819
AciI	CCGC	5 cut(s)	94, 263, 272, 744, 927
AclWI	GGATC	1 cut(s)	342
AcoI	YGGCCR	2 cut(s)	172, 288
AcsI	RAATTY	1 cut(s)	362
AcuI	CTGAAG	1 cut(s)	674
AfaI	GTAC	3 cut(s)	134, 512, 923
AfiI	CCNNNNNNNGG	3 cut(s)	181, 242, 673
AgsI	TTSAA	2 cut(s)	52, 483
AjnI	CCWGG	3 cut(s)	42, 55, 68
AjuI	GAANNNNNNNTTGG	2 cut(s)	173, 205
AluBI	AGCT	4 cut(s)	19, 66, 154, 441
AluI	AGCT	4 cut(s)	19, 66, 154, 441
Alw26I	GTCTC	1 cut(s)	741
AlwI	GGATC	1 cut(s)	342
Ama87I	CYCGRG	2 cut(s)	398, 608
AoxI	GGCC	4 cut(s)	172, 288, 344, 604
ApoI	RAATTY	1 cut(s)	362
ArsI	GACNNNNNNTTYG	4 cut(s)	152, 184, 198, 230
AspS9I	GGNCC	1 cut(s)	254
AsuHPI	GGTGA	3 cut(s)	565, 641, 692
AsuII	TTCGAA	1 cut(s)	435
AvaI	CYCGRG	2 cut(s)	398, 608
AvaII	GGWCC	1 cut(s)	254
BaeGI	GKGCMC	1 cut(s)	807
BalI	TGGCCA	1 cut(s)	290
BccI	CCATC	4 cut(s)	35, 620, 677, 920
BciT130I	CCWGG	3 cut(s)	44, 57, 70
BciVI	GTATCC	1 cut(s)	441
BcoDI	GTCTC	1 cut(s)	741
BfaI	CTAG	1 cut(s)	940
BfuAI	ACCTGC	1 cut(s)	89
BfuI	GTATCC	1 cut(s)	441
BglII	AGATCT	1 cut(s)	379
BisI	GCNGC	1 cut(s)	272
BlsI	GCNGC	1 cut(s)	273
Bme1390I	CCNGG	3 cut(s)	44, 57, 70
Bme18I	GGWCC	1 cut(s)	254
BmeT110I	CYCGRG	2 cut(s)	398, 608
BmgT120I	GGNCC	1 cut(s)	254
BmiI	GGNNCC	1 cut(s)	198
BmrFI	CCNGG	3 cut(s)	44, 57, 70
BmsI	GCATC	1 cut(s)	736
BpmI	CTGGAG	1 cut(s)	26
Bpu14I	TTCGAA	1 cut(s)	435
BpuEI	CTTGAG	2 cut(s)	46, 491
BsaJI	CCNNGG	3 cut(s)	69, 180, 241
BsaWI	WCCGGW	1 cut(s)	886
Bsc4I	CCNNNNNNNGG	3 cut(s)	181, 242, 673
Bse3DI	GCAATG	1 cut(s)	709
BseBI	CCWGG	3 cut(s)	44, 57, 70
BseDI	CCNNGG	3 cut(s)	69, 180, 241
BseGI	GGATG	2 cut(s)	305, 631
BseLI	CCNNNNNNNGG	3 cut(s)	181, 242, 673
BseMI	GCAATG	1 cut(s)	709
BseMII	CTCAG	1 cut(s)	674
BseRI	GAGGAG	1 cut(s)	827
BseSI	GKGCMC	1 cut(s)	807
BseYI	CCCAGC	1 cut(s)	766
BsgI	GTGCAG	1 cut(s)	636
BshFI	GGCC	4 cut(s)	174, 290, 346, 606
BsiHKCI	CYCGRG	2 cut(s)	398, 608
BsiSI	CCGG	1 cut(s)	887
BslFI	GGGAC	1 cut(s)	416
BslI	CCNNNNNNNGG	3 cut(s)	181, 242, 673
BsmAI	GTCTC	1 cut(s)	741
BsmFI	GGGAC	1 cut(s)	416
BsnI	GGCC	4 cut(s)	174, 290, 346, 606
BsoBI	CYCGRG	2 cut(s)	398, 608
Bsp119I	TTCGAA	1 cut(s)	435
Bsp1286I	GDGCHC	1 cut(s)	807
Bsp143I	GATC	2 cut(s)	334, 379
BspACI	CCGC	5 cut(s)	94, 263, 272, 744, 927
BspANI	GGCC	4 cut(s)	174, 290, 346, 606
BspCNI	CTCAG	1 cut(s)	673
BspLI	GGNNCC	1 cut(s)	198
BspMI	ACCTGC	1 cut(s)	89
BspPI	GGATC	1 cut(s)	342
BspT104I	TTCGAA	1 cut(s)	435
BsrBI	CCGCTC	2 cut(s)	265, 274
BsrDI	GCAATG	1 cut(s)	709
BssECI	CCNNGG	3 cut(s)	69, 180, 241
BssMI	GATC	2 cut(s)	334, 379
BssT1I	CCWWGG	1 cut(s)	180
Bst2UI	CCWGG	3 cut(s)	44, 57, 70
Bst4CI	ACNGT	6 cut(s)	7, 116, 242, 418, 488, 857
Bst6I	CTCTTC	2 cut(s)	519, 674
BstBI	TTCGAA	1 cut(s)	435
BstC8I	GCNNGC	2 cut(s)	721, 725
BstDEI	CTNAG	3 cut(s)	621, 660, 894
BstDSI	CCRYGG	1 cut(s)	241
BstF5I	GGATG	2 cut(s)	305, 631
BstKTI	GATC	2 cut(s)	337, 382
BstMAI	GTCTC	1 cut(s)	741
BstMBI	GATC	2 cut(s)	334, 379
BstMWI	GCNNNNNNNGC	1 cut(s)	271
BstNI	CCWGG	3 cut(s)	44, 57, 70
BstNSI	RCATGY	1 cut(s)	723
BstSCI	CCNGG	3 cut(s)	42, 55, 68
BstSLI	GKGCMC	1 cut(s)	807
BstX2I	RGATCY	2 cut(s)	334, 379
BstYI	RGATCY	2 cut(s)	334, 379
BsuI	GTATCC	1 cut(s)	441
BsuRI	GGCC	4 cut(s)	174, 290, 346, 606
BtgI	CCRYGG	1 cut(s)	241
BtgZI	GCGATG	1 cut(s)	243
BtsCI	GGATG	2 cut(s)	305, 631
BtsI	GCAGTG	1 cut(s)	739
BtsIMutI	CAGTG	2 cut(s)	414, 739
BveI	ACCTGC	1 cut(s)	89
Cac8I	GCNNGC	2 cut(s)	721, 725
Cfr13I	GGNCC	1 cut(s)	254
CseI	GACGC	1 cut(s)	542
Csp6I	GTAC	3 cut(s)	133, 511, 922
CspCI	CAANNNNNGTGG	2 cut(s)	565, 600
CviAII	CATG	6 cut(s)	268, 286, 340, 593, 673, 720
CviQI	GTAC	3 cut(s)	133, 511, 922
DdeI	CTNAG	3 cut(s)	621, 660, 894
DpnI	GATC	2 cut(s)	336, 381
DpnII	GATC	2 cut(s)	334, 379
EaeI	YGGCCR	2 cut(s)	172, 288
Eam1104I	CTCTTC	2 cut(s)	519, 674
EarI	CTCTTC	2 cut(s)	519, 674
Eco130I	CCWWGG	1 cut(s)	180
Eco47I	GGWCC	1 cut(s)	254
Eco57I	CTGAAG	1 cut(s)	674
Eco88I	CYCGRG	2 cut(s)	398, 608
EcoRII	CCWGG	3 cut(s)	42, 55, 68
EcoT14I	CCWWGG	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	180
FaeI	CATG	6 cut(s)	271, 289, 343, 596, 676, 723
FaqI	GGGAC	1 cut(s)	416
FatI	CATG	6 cut(s)	267, 285, 339, 592, 672, 719
FauI	CCCGC	1 cut(s)	270
FblI	GTMKAC	1 cut(s)	819
Fnu4HI	GCNGC	1 cut(s)	272
FokI	GGATG	2 cut(s)	292, 638
Fsp4HI	GCNGC	1 cut(s)	272
FspBI	CTAG	1 cut(s)	940
GluI	GCNGC	1 cut(s)	272
GsaI	CCCAGC	1 cut(s)	770
GsuI	CTGGAG	1 cut(s)	26
HaeIII	GGCC	4 cut(s)	174, 290, 346, 606
HapII	CCGG	1 cut(s)	887
HgaI	GACGC	1 cut(s)	542
Hin1II	CATG	6 cut(s)	271, 289, 343, 596, 676, 723
HindIII	AAGCTT	1 cut(s)	439
HinfI	GANTC	4 cut(s)	467, 647, 754, 905
HpaII	CCGG	1 cut(s)	887
HphI	GGTGA	3 cut(s)	565, 641, 692
Hpy166II	GTNNAC	2 cut(s)	777, 820
Hpy188I	TCNGA	4 cut(s)	254, 552, 618, 904
Hpy188III	TCNNGA	2 cut(s)	217, 445
Hpy8I	GTNNAC	2 cut(s)	777, 820
HpyAV	CCTTC	2 cut(s)	275, 666
HpyCH4III	ACNGT	6 cut(s)	7, 116, 242, 418, 488, 857
HpyCH4IV	ACGT	2 cut(s)	300, 779
HpyCH4V	TGCA	3 cut(s)	84, 101, 653
HpyF10VI	GCNNNNNNNGC	1 cut(s)	271
HpyF3I	CTNAG	3 cut(s)	621, 660, 894
HpySE526I	ACGT	2 cut(s)	300, 779
Hsp92II	CATG	6 cut(s)	271, 289, 343, 596, 676, 723
Kzo9I	GATC	2 cut(s)	334, 379
LmnI	GCTCC	2 cut(s)	71, 699
LweI	GCATC	1 cut(s)	736
MaeI	CTAG	1 cut(s)	940
MaeII	ACGT	2 cut(s)	300, 779
MaeIII	GTNAC	2 cut(s)	301, 530
MalI	GATC	2 cut(s)	336, 381
MbiI	CCGCTC	2 cut(s)	265, 274
MboI	GATC	2 cut(s)	334, 379
MboII	GAAGA	6 cut(s)	119, 160, 485, 488, 536, 661
MflI	RGATCY	2 cut(s)	334, 379
MhlI	GDGCHC	1 cut(s)	807
MlsI	TGGCCA	1 cut(s)	290
MluCI	AATT	2 cut(s)	31, 362
MluNI	TGGCCA	1 cut(s)	290
MlyI	GAGTC	3 cut(s)	656, 748, 914
MnlI	CCTC	8 cut(s)	50, 187, 212, 604, 617, 677, 848, 883
Mox20I	TGGCCA	1 cut(s)	290
MscI	TGGCCA	1 cut(s)	290
MseI	TTAA	2 cut(s)	783, 933
Msp20I	TGGCCA	1 cut(s)	290
MspI	CCGG	1 cut(s)	887
MspR9I	CCNGG	3 cut(s)	44, 57, 70
MvaI	CCWGG	3 cut(s)	44, 57, 70
MwoI	GCNNNNNNNGC	1 cut(s)	271
NdeII	GATC	2 cut(s)	334, 379
NlaIII	CATG	6 cut(s)	271, 289, 343, 596, 676, 723
NlaIV	GGNNCC	1 cut(s)	198
NmuCI	GTSAC	2 cut(s)	301, 530
NspI	RCATGY	1 cut(s)	723
NspV	TTCGAA	1 cut(s)	435
PaeI	GCATGC	1 cut(s)	723
PaeR7I	CTCGAG	1 cut(s)	608
PaqCI	CACCTGC	1 cut(s)	89
PcsI	WCGNNNNNNNCGW	1 cut(s)	606
PfeI	GAWTC	1 cut(s)	467
PflFI	GACNNNGTC	1 cut(s)	299
PfoI	TCCNGGA	1 cut(s)	42
PkrI	GCNGC	1 cut(s)	273
PleI	GAGTC	3 cut(s)	655, 748, 913
PpsI	GAGTC	3 cut(s)	655, 748, 913
Psp6I	CCWGG	3 cut(s)	42, 55, 68
PspFI	CCCAGC	1 cut(s)	766
PspGI	CCWGG	3 cut(s)	42, 55, 68
PspN4I	GGNNCC	1 cut(s)	198
PspPI	GGNCC	1 cut(s)	254
PspXI	VCTCGAGB	1 cut(s)	608
PsuI	RGATCY	2 cut(s)	334, 379
PsyI	GACNNNGTC	1 cut(s)	299
RsaI	GTAC	3 cut(s)	134, 512, 923
RsaNI	GTAC	3 cut(s)	133, 511, 922
SaqAI	TTAA	2 cut(s)	783, 933
SatI	GCNGC	1 cut(s)	272
Sau3AI	GATC	2 cut(s)	334, 379
Sau96I	GGNCC	1 cut(s)	254
SchI	GAGTC	3 cut(s)	656, 748, 914
ScrFI	CCNGG	3 cut(s)	44, 57, 70
SduI	GDGCHC	1 cut(s)	807
SfaNI	GCATC	1 cut(s)	736
Sfr274I	CTCGAG	1 cut(s)	608
SfuI	TTCGAA	1 cut(s)	435
SinI	GGWCC	1 cut(s)	254
SlaI	CTCGAG	1 cut(s)	608
SmlI	CTYRAG	3 cut(s)	61, 506, 608
SmoI	CTYRAG	3 cut(s)	61, 506, 608
SphI	GCATGC	1 cut(s)	723
Sse9I	AATT	2 cut(s)	31, 362
SsiI	CCGC	5 cut(s)	94, 263, 272, 744, 927
SspMI	CTAG	1 cut(s)	940
StyD4I	CCNGG	3 cut(s)	42, 55, 68
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	6 cut(s)	7, 116, 242, 418, 488, 857
TaiI	ACGT	2 cut(s)	303, 782
TaqI	TCGA	7 cut(s)	105, 192, 435, 609, 730, 757, 852
TasI	AATT	2 cut(s)	31, 362
TatI	WGTACW	1 cut(s)	510
TauI	GCSGC	1 cut(s)	274
TfiI	GAWTC	1 cut(s)	467
Tru1I	TTAA	2 cut(s)	783, 933
Tru9I	TTAA	2 cut(s)	783, 933
TscAI	CASTG	2 cut(s)	421, 746
TseFI	GTSAC	2 cut(s)	301, 530
Tsp45I	GTSAC	2 cut(s)	301, 530
TspDTI	ATGAA	4 cut(s)	294, 480, 661, 856
TspGWI	ACGGA	2 cut(s)	366, 575
TspRI	CASTG	2 cut(s)	421, 746
Tth111I	GACNNNGTC	1 cut(s)	299
VpaK11BI	GGWCC	1 cut(s)	254
XapI	RAATTY	1 cut(s)	362
XceI	RCATGY	1 cut(s)	723
XhoI	CTCGAG	1 cut(s)	608
XmiI	GTMKAC	1 cut(s)	819
XspI	CTAG	1 cut(s)	940

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.