Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0001604

Physical Location & Seq

Genomic Coordinates Reverse (-)

7678469 .. 7680660

Gene Structure 2192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1092600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGGTTCCTTAACACTTCCAAACCTTCCTACCATCAATTTCTCCGTCGATGCCTTGAAGCCTGGCTCAAGTTCTTGGCTGTCCACCTCCAAACAAGTCCGATATGCACTCGAAGAGTACGGTTGTTTCGTGGCGGAGTACAATCAAGTTTCTGCACAACTTCTGAACAATATCTTTGGGCAGGCCAAAGATTTGTTTGAGGTTCCTTTGGAAAACAAAGTGAAGAACGTTAGTAATGAACCATATCGCGGGTATATTGGACCGAACCACCTTATGCCACTCTATGAAGGTATCGCCATTGATAACGTCACATCCCCACAAGAAACTCAGAAGTTCAAAAATCTCATGTGGCCCGATGGAAAAAGCAATTTCTGTGAAACTACAGATTCATTTGCCCAATTATTATCAGAGTTGGAGCACAAAGTGGAACAAATGCTATTCGAAAGCTATGGATCAGAAAAGCAGTACGAGTCTGTTGCTAGTGCCAACAGCCACCTTCTTAGATTCCTCAAGTATAATAAACCAGAGGAAGCTGATCGTGCTACCTTGAGATTTGCGAGCCATACAGACAAGAACTTCACCACCATCGTTGTTCAACACGACGTTGGTGGTTTGGAGGTTAAAACCAAGGATGGTGACTGGATTAACATTGAGTCCGCACCTTCACAGTTCTTGTTCATGGCCGGTGATGGATTGCAGGTATGGAGTAATGAAAGAATAAAAGCTTGTGATCATCGAGTGAAGCATTGTGGAGACAAGACGAGGTACTCACTTGGGTTGTTTACATTCAATAACGGAAAAATACAGGTGCCAGAAGAACTGGTGGACGAGAGGCATCCACTGCTCTATAACCCATTGGATAGTCTTGAGTATATTAGGTTTCACAGTAGGGGTGAGGCCAGGAACCTAGTCTCTCCTGTGAAGACCTTTTGCGGTGTTACAAATTCTACAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

319

Amino Acids

35.96

Weight (kDa)

5.64

Isoelectric Point (pI)

32.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	9 - 88	4.9e-12	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	169 - 262	9.9e-21	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001604)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28210 FvH4_6g42700 FvH4_7g15780
malus_domestica	MD03G1085000.v1.1 MD05G1208700.v1.1 MD10G1195200.v1.1 MD11G1092600.v1.1
prunus_persica	Prupe.4G262900_v2.0.a1 Prupe.4G263000_v2.0.a1 Prupe.4G263100_v2.0.a1 Prupe.4G264400_v2.0.a1
pyrus_communis	pycom03g06720 pycom05g19460 pycom10g16890 pycom11g07800 pycom11g07820
rosa_chinensis	RchiOBHm_Chr1g0358581 RchiOBHm_Chr4g0395841 RchiOBHm_Chr4g0444921 RchiOBHm_Chr5g0050321 RchiOBHm_Chr5g0050341
rosa_laevigata	RLG00000027944 RLG00000034696 RLG00000034697 RLG00000034698
rosa_multiflora	Rmu_sc0001103.1_g000025 Rmu_sc0001609.1_g000014 Rmu_sc0005060.1_g000004 Rmu_sc0005060.1_g000006
rosa_roxburghii	Rroxscaffold_1G00027250 Rroxscaffold_1G00030670 Rroxscaffold_1G00030700 Rroxscaffold_4G00297680 Rroxscaffold_4G00297780
rosa_rugosa	Rorug01G0262600 Rorug01G0262700 Rorug05G0260000 Rorug05G0260000 Rorug05G0260100
rosa_samantha	Rh1BG243900 Rh1CG260900 Rh4BG429600 Rh4DG425500 Rh5AG331700 Rh5AG331800 Rh5CG369400 Rh5CG369500
rosa_wichuraiana	Rw1G024650 Rw5G031370 Rw5G031380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	688
AccB1I	GGYRCC	1 cut(s)	808
AccII	CGCG	1 cut(s)	249
AciI	CCGC	4 cut(s)	134, 249, 657, 933
AclI	AACGTT	1 cut(s)	228
AclWI	GGATC	1 cut(s)	460
AcoI	YGGCCR	1 cut(s)	681
AcsI	RAATTY	1 cut(s)	943
AdeI	CACNNNGTG	1 cut(s)	424
AfaI	GTAC	4 cut(s)	119, 140, 467, 767
AfiI	CCNNNNNNNGG	1 cut(s)	248
AgsI	TTSAA	4 cut(s)	58, 337, 596, 790
AjnI	CCWGG	2 cut(s)	61, 899
AluBI	AGCT	3 cut(s)	447, 533, 725
AluI	AGCT	3 cut(s)	447, 533, 725
Alw21I	GWGCWC	1 cut(s)	420
Alw26I	GTCTC	2 cut(s)	747, 916
AlwI	GGATC	1 cut(s)	460
AoxI	GGCC	4 cut(s)	183, 350, 681, 897
ApoI	RAATTY	1 cut(s)	943
AspS9I	GGNCC	2 cut(s)	260, 351
AsuHPI	GGTGA	4 cut(s)	571, 647, 698, 905
AsuII	TTCGAA	1 cut(s)	441
AvaII	GGWCC	1 cut(s)	260
BanI	GGYRCC	1 cut(s)	808
BbsI	GAAGAC	1 cut(s)	929
Bbv12I	GWGCWC	1 cut(s)	420
BccI	CCATC	5 cut(s)	41, 350, 593, 626, 683
BcgI	CGANNNNNNTGC	2 cut(s)	458, 492
BciT130I	CCWGG	2 cut(s)	63, 901
BclI	TGATCA	1 cut(s)	730
BcoDI	GTCTC	2 cut(s)	747, 916
BfaI	CTAG	2 cut(s)	480, 908
BfmI	CTRYAG	2 cut(s)	381, 948
BfuAI	ACCTGC	1 cut(s)	688
Bme1390I	CCNGG	2 cut(s)	63, 901
Bme18I	GGWCC	1 cut(s)	260
BmgT120I	GGNCC	2 cut(s)	260, 351
BmiI	GGNNCC	4 cut(s)	7, 204, 810, 905
BmrFI	CCNGG	2 cut(s)	63, 901
BmsI	GCATC	2 cut(s)	40, 844
BpiI	GAAGAC	1 cut(s)	929
Bpu14I	TTCGAA	1 cut(s)	441
BpuEI	CTTGAG	4 cut(s)	52, 494, 568, 887
BsaJI	CCNNGG	1 cut(s)	627
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse118I	RCCGGY	1 cut(s)	683
Bse1I	ACTGG	2 cut(s)	644, 825
BseBI	CCWGG	2 cut(s)	63, 901
BseDI	CCNNGG	1 cut(s)	627
BseGI	GGATG	3 cut(s)	311, 637, 835
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseMII	CTCAG	1 cut(s)	341
BseNI	ACTGG	2 cut(s)	644, 825
BsgI	GTGCAG	1 cut(s)	138
Bsh1236I	CGCG	1 cut(s)	249
BshFI	GGCC	4 cut(s)	185, 352, 683, 899
BshNI	GGYRCC	1 cut(s)	808
BsiHKAI	GWGCWC	1 cut(s)	420
BsiSI	CCGG	1 cut(s)	684
BslI	CCNNNNNNNGG	1 cut(s)	248
BsmAI	GTCTC	2 cut(s)	747, 916
BsnI	GGCC	4 cut(s)	185, 352, 683, 899
Bsp119I	TTCGAA	1 cut(s)	441
Bsp1286I	GDGCHC	1 cut(s)	420
Bsp143I	GATC	3 cut(s)	452, 535, 730
BspACI	CCGC	4 cut(s)	134, 249, 657, 933
BspANI	GGCC	4 cut(s)	185, 352, 683, 899
BspCNI	CTCAG	1 cut(s)	340
BspFNI	CGCG	1 cut(s)	249
BspLI	GGNNCC	4 cut(s)	7, 204, 810, 905
BspMI	ACCTGC	1 cut(s)	688
BspPI	GGATC	1 cut(s)	460
BspT104I	TTCGAA	1 cut(s)	441
BspT107I	GGYRCC	1 cut(s)	808
BsrFI	RCCGGY	1 cut(s)	683
BsrI	ACTGG	2 cut(s)	644, 825
BssAI	RCCGGY	1 cut(s)	683
BssECI	CCNNGG	1 cut(s)	627
BssMI	GATC	3 cut(s)	452, 535, 730
BssT1I	CCWWGG	1 cut(s)	627
Bst2UI	CCWGG	2 cut(s)	63, 901
Bst4CI	ACNGT	3 cut(s)	122, 669, 887
Bst6I	CTCTTC	1 cut(s)	108
BstAPI	GCANNNNNTGC	1 cut(s)	841
BstBI	TTCGAA	1 cut(s)	441
BstC8I	GCNNGC	2 cut(s)	183, 559
BstDEI	CTNAG	2 cut(s)	327, 500
BstF5I	GGATG	3 cut(s)	311, 637, 835
BstFNI	CGCG	1 cut(s)	249
BstKTI	GATC	3 cut(s)	455, 538, 733
BstMAI	GTCTC	2 cut(s)	747, 916
BstMBI	GATC	3 cut(s)	452, 535, 730
BstMWI	GCNNNNNNNGC	2 cut(s)	539, 841
BstNI	CCWGG	2 cut(s)	63, 901
BstSCI	CCNGG	2 cut(s)	61, 899
BstSFI	CTRYAG	2 cut(s)	381, 948
BstUI	CGCG	1 cut(s)	249
BstV2I	GAAGAC	1 cut(s)	929
BsuRI	GGCC	4 cut(s)	185, 352, 683, 899
BtsCI	GGATG	3 cut(s)	311, 637, 835
BtsI	GCAGTG	1 cut(s)	839
BtsIMutI	CAGTG	1 cut(s)	839
BveI	ACCTGC	1 cut(s)	688
Cac8I	GCNNGC	2 cut(s)	183, 559
Cfr10I	RCCGGY	1 cut(s)	683
Cfr13I	GGNCC	2 cut(s)	260, 351
Csp6I	GTAC	4 cut(s)	118, 139, 466, 766
CspCI	CAANNNNNGTGG	2 cut(s)	571, 606
CviAII	CATG	2 cut(s)	346, 679
CviQI	GTAC	4 cut(s)	118, 139, 466, 766
DdeI	CTNAG	2 cut(s)	327, 500
DpnI	GATC	3 cut(s)	454, 537, 732
DpnII	GATC	3 cut(s)	452, 535, 730
DraIII	CACNNNGTG	1 cut(s)	424
EaeI	YGGCCR	1 cut(s)	681
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
EciI	GGCGGA	1 cut(s)	149
Eco130I	CCWWGG	1 cut(s)	627
Eco47I	GGWCC	1 cut(s)	260
EcoRII	CCWGG	2 cut(s)	61, 899
EcoT14I	CCWWGG	1 cut(s)	627
ErhI	CCWWGG	1 cut(s)	627
FaeI	CATG	2 cut(s)	349, 682
FatI	CATG	2 cut(s)	345, 678
FauI	CCCGC	1 cut(s)	242
FbaI	TGATCA	1 cut(s)	730
FokI	GGATG	3 cut(s)	298, 644, 822
FspBI	CTAG	2 cut(s)	480, 908
HaeIII	GGCC	4 cut(s)	185, 352, 683, 899
HapII	CCGG	1 cut(s)	684
Hin1II	CATG	2 cut(s)	349, 682
HindIII	AAGCTT	1 cut(s)	723
HinfI	GANTC	4 cut(s)	386, 470, 504, 653
HpaII	CCGG	1 cut(s)	684
HphI	GGTGA	4 cut(s)	571, 647, 698, 905
Hpy166II	GTNNAC	3 cut(s)	84, 783, 826
Hpy188I	TCNGA	5 cut(s)	101, 165, 330, 409, 457
Hpy188III	TCNNGA	1 cut(s)	866
Hpy8I	GTNNAC	3 cut(s)	84, 783, 826
Hpy99I	CGWCG	2 cut(s)	50, 605
HpyAV	CCTTC	4 cut(s)	35, 281, 506, 672
HpyCH4III	ACNGT	3 cut(s)	122, 669, 887
HpyCH4IV	ACGT	3 cut(s)	228, 306, 603
HpyCH4V	TGCA	3 cut(s)	107, 155, 697
HpyF10VI	GCNNNNNNNGC	2 cut(s)	539, 841
HpyF3I	CTNAG	2 cut(s)	327, 500
HpySE526I	ACGT	3 cut(s)	228, 306, 603
Hsp92II	CATG	2 cut(s)	349, 682
Ksp22I	TGATCA	1 cut(s)	730
Kzo9I	GATC	3 cut(s)	452, 535, 730
LmnI	GCTCC	1 cut(s)	415
LweI	GCATC	2 cut(s)	40, 844
MaeI	CTAG	2 cut(s)	480, 908
MaeII	ACGT	3 cut(s)	228, 306, 603
MaeIII	GTNAC	3 cut(s)	307, 635, 937
MalI	GATC	3 cut(s)	454, 537, 732
MboI	GATC	3 cut(s)	452, 535, 730
MboII	GAAGA	4 cut(s)	125, 235, 827, 934
MhlI	GDGCHC	1 cut(s)	420
MluCI	AATT	4 cut(s)	37, 367, 398, 943
MlyI	GAGTC	2 cut(s)	479, 662
MmeI	TCCRAC	1 cut(s)	393
MnlI	CCTC	8 cut(s)	97, 193, 518, 520, 610, 756, 825, 889
MseI	TTAA	3 cut(s)	11, 621, 645
MspI	CCGG	1 cut(s)	684
MspR9I	CCNGG	2 cut(s)	63, 901
MvaI	CCWGG	2 cut(s)	63, 901
MvnI	CGCG	1 cut(s)	249
MwoI	GCNNNNNNNGC	2 cut(s)	539, 841
NdeII	GATC	3 cut(s)	452, 535, 730
NlaIII	CATG	2 cut(s)	349, 682
NlaIV	GGNNCC	4 cut(s)	7, 204, 810, 905
NmuCI	GTSAC	2 cut(s)	307, 635
NspV	TTCGAA	1 cut(s)	441
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PfeI	GAWTC	2 cut(s)	386, 504
PleI	GAGTC	2 cut(s)	478, 661
PpsI	GAGTC	2 cut(s)	478, 661
Psp1406I	AACGTT	1 cut(s)	228
Psp6I	CCWGG	2 cut(s)	61, 899
PspGI	CCWGG	2 cut(s)	61, 899
PspN4I	GGNNCC	4 cut(s)	7, 204, 810, 905
PspPI	GGNCC	2 cut(s)	260, 351
RsaI	GTAC	4 cut(s)	119, 140, 467, 767
RsaNI	GTAC	4 cut(s)	118, 139, 466, 766
SaqAI	TTAA	3 cut(s)	11, 621, 645
Sau3AI	GATC	3 cut(s)	452, 535, 730
Sau96I	GGNCC	2 cut(s)	260, 351
SchI	GAGTC	2 cut(s)	479, 662
ScrFI	CCNGG	2 cut(s)	63, 901
SduI	GDGCHC	1 cut(s)	420
SfaNI	GCATC	2 cut(s)	40, 844
SfcI	CTRYAG	2 cut(s)	381, 948
SfuI	TTCGAA	1 cut(s)	441
SinI	GGWCC	1 cut(s)	260
SmlI	CTYRAG	4 cut(s)	67, 509, 547, 866
SmoI	CTYRAG	4 cut(s)	67, 509, 547, 866
Sse9I	AATT	4 cut(s)	37, 367, 398, 943
SsiI	CCGC	4 cut(s)	134, 249, 657, 933
SspMI	CTAG	2 cut(s)	480, 908
StyD4I	CCNGG	2 cut(s)	61, 899
StyI	CCWWGG	1 cut(s)	627
TaaI	ACNGT	3 cut(s)	122, 669, 887
TaiI	ACGT	3 cut(s)	231, 309, 606
TaqI	TCGA	4 cut(s)	48, 111, 441, 736
TaqII	GACCGA	1 cut(s)	277
TasI	AATT	4 cut(s)	37, 367, 398, 943
TatI	WGTACW	1 cut(s)	138
TfiI	GAWTC	2 cut(s)	386, 504
Tru1I	TTAA	3 cut(s)	11, 621, 645
Tru9I	TTAA	3 cut(s)	11, 621, 645
TscAI	CASTG	1 cut(s)	846
TseFI	GTSAC	2 cut(s)	307, 635
Tsp45I	GTSAC	2 cut(s)	307, 635
TspDTI	ATGAA	5 cut(s)	252, 300, 378, 667, 726
TspGWI	ACGGA	2 cut(s)	34, 810
TspRI	CASTG	1 cut(s)	846
VpaK11BI	GGWCC	1 cut(s)	260
XapI	RAATTY	1 cut(s)	943
XspI	CTAG	2 cut(s)	480, 908

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.