pycom11g07800

oxidoreductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0001604
Physical Location & Seq
Reverse (-)
5944109 .. 5946099
1991 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g07800.1

Sequence Viewer

Length: 963 bp
ATGGGTTCCTTAACACTTCCAAAGCTTCCTACCATCAATTTCTCCGTCGATGCCTTGAAGCCTGGCTCAAGTTCTTGGCTGTCCACCTCCAAACAAGTCCGATATGCACTCGAAGAGTACGGTTGTTTCGTGGCGCAGTACGATCAAGTTTCTGCACAACTTCTGAACAATATCTTTGGGCAGGCCAAAGATTTGTTTGAGGTTCCTTTGGAAAACAAAGTGAAGAACGTTAGTGATGAACCATATCGTGGGTATATTGGACCCAACCACCTCATGCCACTCTATGAAGGTATCGCCATTGATAATGTCACATCCCCACAAGAAACTCAGAAGTTCAAAAATCTCATGTGGCCCGATGGAAAGAGCAATTTCTGGCTATACGAAAGCTTCGGAGCAGAAAAGCAGTACGAATCTGTTGCTAGTGCCAACAGCCACCTTCTTAGATTCCTCAAGTATAATAAACCAGAGGAAGCTGATCGTGCTACCTTGAGATTTGCGAGCCATACAGACAAGAACTTCACCACCATCGTCGTTCAACACGACGTCGGTGGTTTGGAGGTTAAAACCAAGGATGGTGACTGGATTAACATTGAGTCCGCACCTTCACAGTTCTTATTCATGGCTGGTGATGGATTGCAGGTTTGTTCTCATTCCCATATAATTAAATACCATCAAGTACTTAGTTTTCAATTACTATATACTAGTGTATGGAGTAATGACAGAATAAAAGCTTGTGATCATCGAGTGAAGCATTGTGGAGACAAGACGAGGTACTCACTTGGGTTGTTTACATTCAATAACGGAAAAATACAAGTACCAGAAGAACTGGTGGACGAGACGCACCCACTGCTCTATAACCCATTGGATAGTCTTGAGTATATAAGGTTTCACAGTAGGGGTGAGGCCAGGAATTTAGTCTCTCCTGTCAAGACCTTTTGCGGTGTTACAAATTCTACAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

321

Amino Acids

36.24

Weight (kDa)

6.26

Isoelectric Point (pI)

30.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 9 - 88 9e-12 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 149 - 264 2.1e-15 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 546
Acc36I ACCTGC 1 cut(s) 628
AccB7I CCANNNNNTGG 1 cut(s) 248
AciI CCGC 2 cut(s) 597, 939
AclI AACGTT 1 cut(s) 228
AcsI RAATTY 2 cut(s) 910, 949
AcyI GRCGYC 1 cut(s) 543
AfaI GTAC 6 cut(s) 119, 140, 407, 678, 773, 816
AfiI CCNNNNNNNGG 1 cut(s) 248
AgsI TTSAA 5 cut(s) 58, 337, 536, 689, 796
AhlI ACTAGT 1 cut(s) 701
AjnI CCWGG 2 cut(s) 61, 905
AluBI AGCT 4 cut(s) 25, 387, 473, 731
AluI AGCT 4 cut(s) 25, 387, 473, 731
Alw26I GTCTC 3 cut(s) 753, 830, 922
AoxI GGCC 3 cut(s) 183, 350, 903
ApoI RAATTY 2 cut(s) 910, 949
AspLEI GCGC 1 cut(s) 136
AspS9I GGNCC 2 cut(s) 260, 351
AsuHPI GGTGA 4 cut(s) 511, 587, 638, 911
AvaII GGWCC 1 cut(s) 260
BccI CCATC 6 cut(s) 41, 350, 533, 566, 623, 678
BcgI CGANNNNNNTGC 2 cut(s) 398, 432
BciT130I CCWGG 2 cut(s) 63, 907
BclI TGATCA 1 cut(s) 736
BcoDI GTCTC 3 cut(s) 753, 830, 922
BcuI ACTAGT 1 cut(s) 701
BfaI CTAG 3 cut(s) 420, 702, 961
BfmI CTRYAG 1 cut(s) 954
BfuAI ACCTGC 1 cut(s) 628
BmcAI AGTACT 1 cut(s) 678
Bme1390I CCNGG 2 cut(s) 63, 907
Bme18I GGWCC 1 cut(s) 260
BmgT120I GGNCC 2 cut(s) 260, 351
BmiI GGNNCC 3 cut(s) 7, 204, 262
BmrFI CCNGG 2 cut(s) 63, 907
BmsI GCATC 1 cut(s) 40
BpuEI CTTGAG 4 cut(s) 52, 434, 508, 893
BsaHI GRCGYC 1 cut(s) 543
BsaJI CCNNGG 1 cut(s) 567
Bsc4I CCNNNNNNNGG 1 cut(s) 248
Bse1I ACTGG 2 cut(s) 584, 831
BseBI CCWGG 2 cut(s) 63, 907
BseDI CCNNGG 1 cut(s) 567
BseGI GGATG 2 cut(s) 311, 577
BseLI CCNNNNNNNGG 1 cut(s) 248
BseMII CTCAG 1 cut(s) 341
BseNI ACTGG 2 cut(s) 584, 831
BsgI GTGCAG 1 cut(s) 138
BshFI GGCC 3 cut(s) 185, 352, 905
BslI CCNNNNNNNGG 1 cut(s) 248
BsmAI GTCTC 3 cut(s) 753, 830, 922
BsmBI CGTCTC 1 cut(s) 830
BsnI GGCC 3 cut(s) 185, 352, 905
Bsp143I GATC 3 cut(s) 142, 475, 736
BspACI CCGC 2 cut(s) 597, 939
BspANI GGCC 3 cut(s) 185, 352, 905
BspCNI CTCAG 1 cut(s) 340
BspLI GGNNCC 3 cut(s) 7, 204, 262
BspMI ACCTGC 1 cut(s) 628
BsrI ACTGG 2 cut(s) 584, 831
BssECI CCNNGG 1 cut(s) 567
BssMI GATC 3 cut(s) 142, 475, 736
BssNI GRCGYC 1 cut(s) 543
BssT1I CCWWGG 1 cut(s) 567
Bst2UI CCWGG 2 cut(s) 63, 907
Bst4CI ACNGT 3 cut(s) 122, 609, 893
Bst6I CTCTTC 1 cut(s) 108
BstACI GRCGYC 1 cut(s) 543
BstAPI GCANNNNNTGC 1 cut(s) 847
BstC8I GCNNGC 2 cut(s) 183, 499
BstDEI CTNAG 3 cut(s) 327, 440, 680
BstF5I GGATG 2 cut(s) 311, 577
BstHHI GCGC 1 cut(s) 136
BstKTI GATC 3 cut(s) 145, 478, 739
BstMAI GTCTC 3 cut(s) 753, 830, 922
BstMBI GATC 3 cut(s) 142, 475, 736
BstMWI GCNNNNNNNGC 2 cut(s) 479, 847
BstNI CCWGG 2 cut(s) 63, 907
BstSCI CCNGG 2 cut(s) 61, 905
BstSFI CTRYAG 1 cut(s) 954
BsuRI GGCC 3 cut(s) 185, 352, 905
BtsCI GGATG 2 cut(s) 311, 577
BtsI GCAGTG 1 cut(s) 845
BtsIMutI CAGTG 1 cut(s) 845
BveI ACCTGC 1 cut(s) 628
Cac8I GCNNGC 2 cut(s) 183, 499
CfoI GCGC 1 cut(s) 136
Cfr13I GGNCC 2 cut(s) 260, 351
CseI GACGC 1 cut(s) 847
Csp6I GTAC 6 cut(s) 118, 139, 406, 677, 772, 815
CviAII CATG 3 cut(s) 274, 346, 619
CviQI GTAC 6 cut(s) 118, 139, 406, 677, 772, 815
DdeI CTNAG 3 cut(s) 327, 440, 680
DpnI GATC 3 cut(s) 144, 477, 738
DpnII GATC 3 cut(s) 142, 475, 736
Eam1104I CTCTTC 1 cut(s) 108
EarI CTCTTC 1 cut(s) 108
Eco130I CCWWGG 1 cut(s) 567
Eco47I GGWCC 1 cut(s) 260
EcoRII CCWGG 2 cut(s) 61, 905
EcoT14I CCWWGG 1 cut(s) 567
ErhI CCWWGG 1 cut(s) 567
Esp3I CGTCTC 1 cut(s) 830
FaeI CATG 3 cut(s) 277, 349, 622
FatI CATG 3 cut(s) 273, 345, 618
FbaI TGATCA 1 cut(s) 736
FokI GGATG 2 cut(s) 298, 584
FspBI CTAG 3 cut(s) 420, 702, 961
GlaI GCGC 1 cut(s) 135
HaeIII GGCC 3 cut(s) 185, 352, 905
HgaI GACGC 1 cut(s) 847
HhaI GCGC 1 cut(s) 136
Hin1I GRCGYC 1 cut(s) 543
Hin1II CATG 3 cut(s) 277, 349, 622
Hin6I GCGC 1 cut(s) 134
HinP1I GCGC 1 cut(s) 134
HindIII AAGCTT 3 cut(s) 23, 385, 729
HinfI GANTC 3 cut(s) 410, 444, 593
HphI GGTGA 4 cut(s) 511, 587, 638, 911
Hpy166II GTNNAC 3 cut(s) 84, 789, 832
Hpy188I TCNGA 4 cut(s) 101, 165, 330, 392
Hpy188III TCNNGA 2 cut(s) 872, 928
Hpy8I GTNNAC 3 cut(s) 84, 789, 832
Hpy99I CGWCG 4 cut(s) 50, 533, 545, 548
HpyAV CCTTC 3 cut(s) 281, 446, 612
HpyCH4III ACNGT 3 cut(s) 122, 609, 893
HpyCH4IV ACGT 2 cut(s) 228, 543
HpyCH4V TGCA 3 cut(s) 107, 155, 637
HpyF10VI GCNNNNNNNGC 2 cut(s) 479, 847
HpyF3I CTNAG 3 cut(s) 327, 440, 680
HpySE526I ACGT 2 cut(s) 228, 543
Hsp92I GRCGYC 1 cut(s) 543
Hsp92II CATG 3 cut(s) 277, 349, 622
HspAI GCGC 1 cut(s) 134
Ksp22I TGATCA 1 cut(s) 736
Kzo9I GATC 3 cut(s) 142, 475, 736
LmnI GCTCC 1 cut(s) 392
LweI GCATC 1 cut(s) 40
MaeI CTAG 3 cut(s) 420, 702, 961
MaeII ACGT 2 cut(s) 228, 543
MaeIII GTNAC 3 cut(s) 307, 575, 943
MalI GATC 3 cut(s) 144, 477, 738
MboI GATC 3 cut(s) 142, 475, 736
MboII GAAGA 3 cut(s) 125, 235, 833
MluCI AATT 6 cut(s) 37, 367, 660, 689, 910, 949
MlyI GAGTC 1 cut(s) 602
MnlI CCTC 8 cut(s) 97, 193, 281, 458, 460, 550, 762, 895
MseI TTAA 4 cut(s) 11, 561, 585, 663
MspR9I CCNGG 2 cut(s) 63, 907
MvaI CCWGG 2 cut(s) 63, 907
MwoI GCNNNNNNNGC 2 cut(s) 479, 847
NdeII GATC 3 cut(s) 142, 475, 736
NlaIII CATG 3 cut(s) 277, 349, 622
NlaIV GGNNCC 3 cut(s) 7, 204, 262
NmuCI GTSAC 2 cut(s) 307, 575
PcsI WCGNNNNNNNCGW 2 cut(s) 126, 537
PfeI GAWTC 2 cut(s) 410, 444
PflMI CCANNNNNTGG 1 cut(s) 248
PleI GAGTC 1 cut(s) 601
PpsI GAGTC 1 cut(s) 601
Psp1406I AACGTT 1 cut(s) 228
Psp6I CCWGG 2 cut(s) 61, 905
PspGI CCWGG 2 cut(s) 61, 905
PspN4I GGNNCC 3 cut(s) 7, 204, 262
PspPI GGNCC 2 cut(s) 260, 351
RsaI GTAC 6 cut(s) 119, 140, 407, 678, 773, 816
RsaNI GTAC 6 cut(s) 118, 139, 406, 677, 772, 815
SaqAI TTAA 4 cut(s) 11, 561, 585, 663
Sau3AI GATC 3 cut(s) 142, 475, 736
Sau96I GGNCC 2 cut(s) 260, 351
ScaI AGTACT 1 cut(s) 678
SchI GAGTC 1 cut(s) 602
ScrFI CCNGG 2 cut(s) 63, 907
SfaNI GCATC 1 cut(s) 40
SfcI CTRYAG 1 cut(s) 954
SinI GGWCC 1 cut(s) 260
SmlI CTYRAG 4 cut(s) 67, 449, 487, 872
SmoI CTYRAG 4 cut(s) 67, 449, 487, 872
SpeI ACTAGT 1 cut(s) 701
Sse9I AATT 6 cut(s) 37, 367, 660, 689, 910, 949
SsiI CCGC 2 cut(s) 597, 939
SspMI CTAG 3 cut(s) 420, 702, 961
StyD4I CCNGG 2 cut(s) 61, 905
StyI CCWWGG 1 cut(s) 567
TaaI ACNGT 3 cut(s) 122, 609, 893
TaiI ACGT 2 cut(s) 231, 546
TaqI TCGA 3 cut(s) 48, 111, 742
TasI AATT 6 cut(s) 37, 367, 660, 689, 910, 949
TatI WGTACW 1 cut(s) 676
TfiI GAWTC 2 cut(s) 410, 444
Tru1I TTAA 4 cut(s) 11, 561, 585, 663
Tru9I TTAA 4 cut(s) 11, 561, 585, 663
TscAI CASTG 1 cut(s) 852
TseFI GTSAC 2 cut(s) 307, 575
Tsp45I GTSAC 2 cut(s) 307, 575
TspDTI ATGAA 3 cut(s) 252, 300, 607
TspGWI ACGGA 2 cut(s) 34, 816
TspRI CASTG 1 cut(s) 852
Van91I CCANNNNNTGG 1 cut(s) 248
VpaK11BI GGWCC 1 cut(s) 260
XapI RAATTY 2 cut(s) 910, 949
XspI CTAG 3 cut(s) 420, 702, 961
ZraI GACGTC 1 cut(s) 544
ZrmI AGTACT 1 cut(s) 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.