Prupe.4G264400_v2.0.a1

oxidoreductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0001604
Physical Location & Seq
Reverse (-)
19482846 .. 19484497
1652 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G264400.1

Sequence Viewer

Length: 951 bp
ATGGGTTCCCTAACACTGCCTAATAAGCTCCCTACCATCAATTTCTCCATTGAAGACTTGAAGCCTGGCTCAGCTTCTTGGCTGTCCACCGCCAAACAAGTCCGGTTTGCGCTTGAAGAATACGGCTCTTTCGTGGCACAATATGAGCAAATTTCTGGGGAACTTTTAAACAACATGTTTGGCCAAGCCAAAGATTTATTTGAGGTTCCCAAAGAAAACAAAGTCAAGAACGTTGGTGAAGAACCCTATCGTGGGCATATGGGTCCAAACCCCGGCCTGCCACTCTATGAAAGCTTGTGCATCGATAATGTGACATCCCCACAAGAAACCCAAAAGTTCAAAAATCTCATGTGGCCCGAAGGAAAGAGCAACTTCTGTGAAACCACAGATTCATTTGGTCAGTTATTGGCAAATTTGGAACGCACAGTTGAGCAACTGCTATTCGAAAGCTATGGGATTGGAAAGCAGTACGAGTCGGTTGGTAGTTCCAACGGTCACCTTGTTAGATTCATCAAATATACAGTACCAGAGGACAAGGATGCCACCGTAAGGTTTCCGAGCCACACAGACATAAACTTCACCACCATTGTTGTTCAGCATGATATCCCTGGCTTGGAGGTCAAAACCAAGGAAGGCGATTGGATTAATGTTGAGTGCGCACCCTCACAATTCGTATTCATGGCGGGTGATGGATTGCAGGTGTGGAGCAATGACAGAGTAAAAGCTTGCCACCATCGAGTGAAGCATTGTGGAAACAAGACAAGATATTCAATTGGACTGTTTACATTCAACAATGGGATTTTCCAAGTGCCTGAAGAATTAGTGGACGGAAGCCACCCACTGCTCTATAATGCATTTGATAGCCGTGCCTTTATTCGAAAATATGCTACTACTCCAGAGTTGAAGAAGGAACCCTCTCCTATCAAGGCCTTTGCCGGTGTCAAATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

317

Amino Acids

35.48

Weight (kDa)

5.95

Isoelectric Point (pI)

33.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 688
Acc16I TGCGCA 1 cut(s) 658
Acc36I ACCTGC 1 cut(s) 688
AciI CCGC 2 cut(s) 90, 683
AclI AACGTT 1 cut(s) 231
AcoI YGGCCR 1 cut(s) 181
AcsI RAATTY 2 cut(s) 150, 412
AcuI CTGAAG 1 cut(s) 834
AfaI GTAC 2 cut(s) 470, 525
AfiI CCNNNNNNNGG 5 cut(s) 251, 252, 272, 549, 613
AflIII ACRYGT 1 cut(s) 174
AgsI TTSAA 7 cut(s) 53, 61, 116, 340, 771, 790, 904
AjnI CCWGG 2 cut(s) 64, 607
AluBI AGCT 5 cut(s) 28, 74, 294, 450, 725
AluI AGCT 5 cut(s) 28, 74, 294, 450, 725
AoxI GGCC 4 cut(s) 181, 274, 353, 927
ApoI RAATTY 2 cut(s) 150, 412
AseI ATTAAT 1 cut(s) 645
AspLEI GCGC 2 cut(s) 112, 659
AspS9I GGNCC 2 cut(s) 263, 354
AsuC2I CCSGG 1 cut(s) 273
AsuHPI GGTGA 4 cut(s) 248, 488, 571, 698
AsuII TTCGAA 2 cut(s) 444, 877
AvaII GGWCC 1 cut(s) 263
BalI TGGCCA 1 cut(s) 183
BbsI GAAGAC 1 cut(s) 60
BccI CCATC 3 cut(s) 44, 683, 741
BceAI ACGGC 2 cut(s) 139, 849
BciT130I CCWGG 2 cut(s) 66, 609
BcnI CCSGG 1 cut(s) 273
BfuAI ACCTGC 1 cut(s) 688
BlpI GCTNAGC 1 cut(s) 70
Bme1390I CCNGG 3 cut(s) 66, 273, 609
Bme18I GGWCC 1 cut(s) 263
BmgT120I GGNCC 2 cut(s) 263, 354
BmiI GGNNCC 4 cut(s) 7, 207, 264, 912
BmrFI CCNGG 3 cut(s) 66, 273, 609
BmsI GCATC 2 cut(s) 309, 529
BpiI GAAGAC 1 cut(s) 60
BpmI CTGGAG 1 cut(s) 879
Bpu1102I GCTNAGC 1 cut(s) 70
Bpu14I TTCGAA 2 cut(s) 444, 877
BpuMI CCSGG 1 cut(s) 273
Bsa29I ATCGAT 1 cut(s) 303
BsaJI CCNNGG 3 cut(s) 271, 607, 627
BsaWI WCCGGW 1 cut(s) 102
Bsc4I CCNNNNNNNGG 5 cut(s) 251, 252, 272, 549, 613
Bse118I RCCGGY 1 cut(s) 935
Bse3DI GCAATG 1 cut(s) 715
BseBI CCWGG 2 cut(s) 66, 609
BseCI ATCGAT 1 cut(s) 303
BseDI CCNNGG 3 cut(s) 271, 607, 627
BseGI GGATG 2 cut(s) 314, 544
BseLI CCNNNNNNNGG 5 cut(s) 251, 252, 272, 549, 613
BseMI GCAATG 1 cut(s) 715
BseMII CTCAG 1 cut(s) 84
BshFI GGCC 4 cut(s) 183, 276, 355, 929
BshVI ATCGAT 1 cut(s) 303
BsiSI CCGG 3 cut(s) 103, 273, 936
BslI CCNNNNNNNGG 5 cut(s) 251, 252, 272, 549, 613
BsnI GGCC 4 cut(s) 183, 276, 355, 929
Bsp119I TTCGAA 2 cut(s) 444, 877
Bsp1720I GCTNAGC 1 cut(s) 70
BspACI CCGC 2 cut(s) 90, 683
BspANI GGCC 4 cut(s) 183, 276, 355, 929
BspCNI CTCAG 1 cut(s) 83
BspDI ATCGAT 1 cut(s) 303
BspLI GGNNCC 4 cut(s) 7, 207, 264, 912
BspMI ACCTGC 1 cut(s) 688
BspT104I TTCGAA 2 cut(s) 444, 877
BsrDI GCAATG 1 cut(s) 715
BsrFI RCCGGY 1 cut(s) 935
BssAI RCCGGY 1 cut(s) 935
BssECI CCNNGG 3 cut(s) 271, 607, 627
BssT1I CCWWGG 1 cut(s) 627
Bst2UI CCWGG 2 cut(s) 66, 609
Bst4CI ACNGT 5 cut(s) 427, 494, 523, 547, 780
BstBI TTCGAA 2 cut(s) 444, 877
BstC8I GCNNGC 2 cut(s) 278, 727
BstDEI CTNAG 1 cut(s) 70
BstEII GGTNACC 1 cut(s) 494
BstF5I GGATG 2 cut(s) 314, 544
BstHHI GCGC 2 cut(s) 112, 659
BstMWI GCNNNNNNNGC 1 cut(s) 25
BstNI CCWGG 2 cut(s) 66, 609
BstNSI RCATGY 1 cut(s) 178
BstPI GGTNACC 1 cut(s) 494
BstSCI CCNGG 3 cut(s) 64, 271, 607
BstV2I GAAGAC 1 cut(s) 60
Bsu15I ATCGAT 1 cut(s) 303
BsuRI GGCC 4 cut(s) 183, 276, 355, 929
BsuTUI ATCGAT 1 cut(s) 303
BtsCI GGATG 2 cut(s) 314, 544
BtsI GCAGTG 2 cut(s) 14, 839
BtsIMutI CAGTG 2 cut(s) 14, 839
BveI ACCTGC 1 cut(s) 688
Cac8I GCNNGC 2 cut(s) 278, 727
CfoI GCGC 2 cut(s) 112, 659
Cfr10I RCCGGY 1 cut(s) 935
Cfr13I GGNCC 2 cut(s) 263, 354
ClaI ATCGAT 1 cut(s) 303
Csp6I GTAC 2 cut(s) 469, 524
CspCI CAANNNNNGTGG 2 cut(s) 571, 606
CviAII CATG 4 cut(s) 175, 349, 599, 679
CviQI GTAC 2 cut(s) 469, 524
DdeI CTNAG 1 cut(s) 70
DraI TTTAAA 1 cut(s) 168
EaeI YGGCCR 1 cut(s) 181
Eco130I CCWWGG 1 cut(s) 627
Eco147I AGGCCT 1 cut(s) 929
Eco32I GATATC 1 cut(s) 604
Eco47I GGWCC 1 cut(s) 263
Eco57I CTGAAG 1 cut(s) 834
Eco91I GGTNACC 1 cut(s) 494
EcoO65I GGTNACC 1 cut(s) 494
EcoRII CCWGG 2 cut(s) 64, 607
EcoRV GATATC 1 cut(s) 604
EcoT14I CCWWGG 1 cut(s) 627
EcoT22I ATGCAT 1 cut(s) 856
ErhI CCWWGG 1 cut(s) 627
FaeI CATG 4 cut(s) 178, 352, 602, 682
FalI AAGNNNNNCTT 2 cut(s) 356, 388
FatI CATG 4 cut(s) 174, 348, 598, 678
FauI CCCGC 1 cut(s) 676
FauNDI CATATG 1 cut(s) 258
FokI GGATG 2 cut(s) 301, 551
FspAI RTGCGCAY 1 cut(s) 658
FspI TGCGCA 1 cut(s) 658
GlaI GCGC 2 cut(s) 111, 658
GsuI CTGGAG 1 cut(s) 879
HaeIII GGCC 4 cut(s) 183, 276, 355, 929
HapII CCGG 3 cut(s) 103, 273, 936
HhaI GCGC 2 cut(s) 112, 659
Hin1II CATG 4 cut(s) 178, 352, 602, 682
Hin6I GCGC 2 cut(s) 110, 657
HinP1I GCGC 2 cut(s) 110, 657
HindIII AAGCTT 2 cut(s) 292, 723
HinfI GANTC 3 cut(s) 389, 473, 507
HpaII CCGG 3 cut(s) 103, 273, 936
HphI GGTGA 4 cut(s) 248, 488, 571, 698
Hpy166II GTNNAC 3 cut(s) 87, 783, 826
Hpy188I TCNGA 1 cut(s) 558
Hpy188III TCNNGA 2 cut(s) 226, 896
Hpy8I GTNNAC 3 cut(s) 87, 783, 826
HpyAV CCTTC 3 cut(s) 353, 626, 901
HpyCH4III ACNGT 5 cut(s) 427, 494, 523, 547, 780
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 3 cut(s) 300, 697, 854
HpyF10VI GCNNNNNNNGC 1 cut(s) 25
HpyF3I CTNAG 1 cut(s) 70
HpySE526I ACGT 1 cut(s) 231
Hsp92II CATG 4 cut(s) 178, 352, 602, 682
HspAI GCGC 2 cut(s) 110, 657
LmnI GCTCC 2 cut(s) 33, 705
LweI GCATC 2 cut(s) 309, 529
MaeII ACGT 1 cut(s) 231
MaeIII GTNAC 2 cut(s) 310, 494
MboII GAAGA 5 cut(s) 65, 128, 251, 827, 916
MfeI CAATTG 1 cut(s) 771
MlsI TGGCCA 1 cut(s) 183
MluCI AATT 6 cut(s) 40, 150, 412, 668, 771, 818
MluNI TGGCCA 1 cut(s) 183
MlyI GAGTC 1 cut(s) 482
MmeI TCCRAC 1 cut(s) 513
MnlI CCTC 5 cut(s) 196, 523, 610, 673, 925
Mox20I TGGCCA 1 cut(s) 183
Mph1103I ATGCAT 1 cut(s) 856
MscI TGGCCA 1 cut(s) 183
MseI TTAA 3 cut(s) 167, 645, 949
Msp20I TGGCCA 1 cut(s) 183
MspI CCGG 3 cut(s) 103, 273, 936
MspR9I CCNGG 3 cut(s) 66, 273, 609
MunI CAATTG 1 cut(s) 771
MvaI CCWGG 2 cut(s) 66, 609
MwoI GCNNNNNNNGC 1 cut(s) 25
NciI CCSGG 1 cut(s) 273
NdeI CATATG 1 cut(s) 258
NlaIII CATG 4 cut(s) 178, 352, 602, 682
NlaIV GGNNCC 4 cut(s) 7, 207, 264, 912
NmuCI GTSAC 2 cut(s) 310, 494
NsbI TGCGCA 1 cut(s) 658
NsiI ATGCAT 1 cut(s) 856
NspI RCATGY 1 cut(s) 178
NspV TTCGAA 2 cut(s) 444, 877
PaqCI CACCTGC 1 cut(s) 688
PceI AGGCCT 1 cut(s) 929
PciI ACATGT 1 cut(s) 174
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PfeI GAWTC 2 cut(s) 389, 507
PleI GAGTC 1 cut(s) 481
PpsI GAGTC 1 cut(s) 481
PscI ACATGT 1 cut(s) 174
PshBI ATTAAT 1 cut(s) 645
Psp1406I AACGTT 1 cut(s) 231
Psp6I CCWGG 2 cut(s) 64, 607
PspEI GGTNACC 1 cut(s) 494
PspGI CCWGG 2 cut(s) 64, 607
PspN4I GGNNCC 4 cut(s) 7, 207, 264, 912
PspPI GGNCC 2 cut(s) 263, 354
RsaI GTAC 2 cut(s) 470, 525
RsaNI GTAC 2 cut(s) 469, 524
SaqAI TTAA 3 cut(s) 167, 645, 949
Sau96I GGNCC 2 cut(s) 263, 354
SchI GAGTC 1 cut(s) 482
ScrFI CCNGG 3 cut(s) 66, 273, 609
SfaNI GCATC 2 cut(s) 309, 529
SfuI TTCGAA 2 cut(s) 444, 877
SinI GGWCC 1 cut(s) 263
Sse9I AATT 6 cut(s) 40, 150, 412, 668, 771, 818
SseBI AGGCCT 1 cut(s) 929
SsiI CCGC 2 cut(s) 90, 683
StuI AGGCCT 1 cut(s) 929
StyD4I CCNGG 3 cut(s) 64, 271, 607
StyI CCWWGG 1 cut(s) 627
TaaI ACNGT 5 cut(s) 427, 494, 523, 547, 780
TaiI ACGT 1 cut(s) 234
TaqI TCGA 4 cut(s) 303, 444, 736, 877
TasI AATT 6 cut(s) 40, 150, 412, 668, 771, 818
TfiI GAWTC 2 cut(s) 389, 507
Tru1I TTAA 3 cut(s) 167, 645, 949
Tru9I TTAA 3 cut(s) 167, 645, 949
TscAI CASTG 2 cut(s) 21, 846
TseFI GTSAC 2 cut(s) 310, 494
Tsp45I GTSAC 2 cut(s) 310, 494
TspDTI ATGAA 4 cut(s) 303, 381, 499, 667
TspGWI ACGGA 1 cut(s) 843
TspRI CASTG 2 cut(s) 21, 846
VpaK11BI GGWCC 1 cut(s) 263
VspI ATTAAT 1 cut(s) 645
XapI RAATTY 2 cut(s) 150, 412
XceI RCATGY 1 cut(s) 178
Zsp2I ATGCAT 1 cut(s) 856
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.