Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001604

Physical Location & Seq

Genomic Coordinates Forward (+)

34435167 .. 34436845

Gene Structure 1679 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00027250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGGTTCCATGACACTTCCCAAAGAGCTCCCTTCCATCAATTTCTCCCTCCAGGACTTGAAGCCTGGCTCAAGCTCCTGGGCTTCCACCTGCAAACAAATCCGCAGTGCACTTGAAGAATACGGTTGCTTTGTGGCATTGTACCAACAAGTTTCCCCACAGCTTATGGACAATATCTTTGGCCAATCCAAGGATTTGTTCGAGGTTCCCCTCGAAAACAAAGTCAAGAACACCAGCGAGGAGCCTTACCGTGGCTACATCGAACCAAACCCGCTCATGCCGCTCTATGAAGGCATGGCCATTGACAACGTTACATGCCCACAAGAAACTCAAAAGTTTAGGGATCTCATGTGGCCTAACGGAAAGACCAAATTCTGCGAAATCACAGATCTATTTGCCAAGTTGCTCGGGGACTTGGAAAACACTGTGGAAAAGATGTTGTTCGAAAGCTTCGGGATACCCCAAGAGCAATATGAATCGTTGGCGAGTTCAAACAGTCATCTTCTTCGTTTTCTCAAGTATAGGGCACCAGAAGAGAGTGACACAAAGATCAGGTTTCAGAGCCACACGGACAAGAACTTCACCACCATTGTTGTTCAGCATGATGTCGGTGGCCTCGAGGTTCCGACTAAGAATGGTGATTGGATTAGTGTTGAGTCTACACCTTCTCAGTTTCTCTTCATGGCTGGTGATGGACTTCAGGTATGGAGCAATGACAGAATAAAAGCATGCCAGCATCGAGTGAAGAACTGCGGAGACAAGACTCGATACTCGCTGGGAATGTTTACGTTTAACAATGGAGTATTCCAAGTGCCCAAAGAGTTAGTAGACGACAGCCACCCACTCCTCTACAAGCAGTTCGACAGCCGTGGTTTCATAAAATTTTACACCACACCGGAGGCTAAGAAGGCAGAGTCGCCCATCAAAGCATACTGCGGTGTTAAAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

316

Amino Acids

35.99

Weight (kDa)

5.84

Isoelectric Point (pI)

40.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	10 - 88	1.6e-13	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	171 - 263	6.3e-21	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001604)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28210 FvH4_6g42700 FvH4_7g15780
malus_domestica	MD03G1085000.v1.1 MD05G1208700.v1.1 MD10G1195200.v1.1 MD11G1092600.v1.1
prunus_persica	Prupe.4G262900_v2.0.a1 Prupe.4G263000_v2.0.a1 Prupe.4G263100_v2.0.a1 Prupe.4G264400_v2.0.a1
pyrus_communis	pycom03g06720 pycom05g19460 pycom10g16890 pycom11g07800 pycom11g07820
rosa_chinensis	RchiOBHm_Chr1g0358581 RchiOBHm_Chr4g0395841 RchiOBHm_Chr4g0444921 RchiOBHm_Chr5g0050321 RchiOBHm_Chr5g0050341
rosa_laevigata	RLG00000027944 RLG00000034696 RLG00000034697 RLG00000034698
rosa_multiflora	Rmu_sc0001103.1_g000025 Rmu_sc0001609.1_g000014 Rmu_sc0005060.1_g000004 Rmu_sc0005060.1_g000006
rosa_roxburghii	Rroxscaffold_1G00027250 Rroxscaffold_1G00030670 Rroxscaffold_1G00030700 Rroxscaffold_4G00297680 Rroxscaffold_4G00297780
rosa_rugosa	Rorug01G0262600 Rorug01G0262700 Rorug05G0260000 Rorug05G0260000 Rorug05G0260100
rosa_samantha	Rh1BG243900 Rh1CG260900 Rh4BG429600 Rh4DG425500 Rh5AG331700 Rh5AG331800 Rh5CG369400 Rh5CG369500
rosa_wichuraiana	Rw1G024650 Rw5G031370 Rw5G031380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	98
AbsI	CCTCGAGG	1 cut(s)	617
Acc36I	ACCTGC	1 cut(s)	98
AccB1I	GGYRCC	1 cut(s)	526
AccBSI	CCGCTC	2 cut(s)	274, 283
AccI	GTMKAC	2 cut(s)	659, 828
AciI	CCGC	5 cut(s)	103, 272, 281, 753, 936
AclI	AACGTT	1 cut(s)	309
AclWI	GGATC	1 cut(s)	351
AcoI	YGGCCR	2 cut(s)	181, 297
AcsI	RAATTY	2 cut(s)	371, 881
AcuI	CTGAAG	1 cut(s)	683
AfaI	GTAC	1 cut(s)	143
AfiI	CCNNNNNNNGG	2 cut(s)	190, 251
AgsI	TTSAA	3 cut(s)	61, 116, 492
AjnI	CCWGG	3 cut(s)	51, 64, 77
AjuI	GAANNNNNNNTTGG	2 cut(s)	182, 214
AluBI	AGCT	4 cut(s)	28, 75, 163, 450
AluI	AGCT	4 cut(s)	28, 75, 163, 450
Alw21I	GWGCWC	2 cut(s)	30, 112
Alw26I	GTCTC	1 cut(s)	750
Alw44I	GTGCAC	1 cut(s)	108
AlwI	GGATC	1 cut(s)	351
Ama87I	CYCGRG	2 cut(s)	407, 617
AoxI	GGCC	4 cut(s)	181, 297, 353, 613
ApaLI	GTGCAC	1 cut(s)	108
ApoI	RAATTY	2 cut(s)	371, 881
ArsI	GACNNNNNNTTYG	4 cut(s)	161, 193, 207, 239
AsuHPI	GGTGA	3 cut(s)	574, 650, 701
AsuII	TTCGAA	1 cut(s)	444
AvaI	CYCGRG	2 cut(s)	407, 617
BaeGI	GKGCMC	3 cut(s)	112, 529, 816
BalI	TGGCCA	2 cut(s)	183, 299
BanI	GGYRCC	1 cut(s)	526
BanII	GRGCYC	1 cut(s)	30
Bbv12I	GWGCWC	2 cut(s)	30, 112
BccI	CCATC	3 cut(s)	44, 686, 929
BceAI	ACGGC	1 cut(s)	852
BciT130I	CCWGG	3 cut(s)	53, 66, 79
BciVI	GTATCC	1 cut(s)	450
BcoDI	GTCTC	1 cut(s)	750
BfuAI	ACCTGC	1 cut(s)	98
BfuI	GTATCC	1 cut(s)	450
BglII	AGATCT	1 cut(s)	388
BisI	GCNGC	1 cut(s)	281
BlsI	GCNGC	1 cut(s)	282
Bme1390I	CCNGG	3 cut(s)	53, 66, 79
BmeT110I	CYCGRG	2 cut(s)	407, 617
BmiI	GGNNCC	5 cut(s)	7, 207, 243, 528, 624
BmrFI	CCNGG	3 cut(s)	53, 66, 79
BmsI	GCATC	1 cut(s)	745
BpmI	CTGGAG	1 cut(s)	35
Bpu14I	TTCGAA	1 cut(s)	444
BpuEI	CTTGAG	2 cut(s)	55, 500
BsaJI	CCNNGG	4 cut(s)	78, 189, 250, 868
BsaWI	WCCGGW	1 cut(s)	895
Bsc4I	CCNNNNNNNGG	2 cut(s)	190, 251
Bse3DI	GCAATG	1 cut(s)	718
BseBI	CCWGG	3 cut(s)	53, 66, 79
BseDI	CCNNGG	4 cut(s)	78, 189, 250, 868
BseLI	CCNNNNNNNGG	2 cut(s)	190, 251
BseMI	GCAATG	1 cut(s)	718
BseMII	CTCAG	1 cut(s)	683
BseRI	GAGGAG	2 cut(s)	254, 836
BseSI	GKGCMC	3 cut(s)	112, 529, 816
BseYI	CCCAGC	1 cut(s)	775
BshFI	GGCC	4 cut(s)	183, 299, 355, 615
BshNI	GGYRCC	1 cut(s)	526
BsiHKAI	GWGCWC	2 cut(s)	30, 112
BsiHKCI	CYCGRG	2 cut(s)	407, 617
BsiSI	CCGG	1 cut(s)	896
BslFI	GGGAC	1 cut(s)	425
BslI	CCNNNNNNNGG	2 cut(s)	190, 251
BsmAI	GTCTC	1 cut(s)	750
BsmFI	GGGAC	1 cut(s)	425
BsnI	GGCC	4 cut(s)	183, 299, 355, 615
BsoBI	CYCGRG	2 cut(s)	407, 617
Bsp119I	TTCGAA	1 cut(s)	444
Bsp1286I	GDGCHC	4 cut(s)	30, 112, 529, 816
Bsp143I	GATC	3 cut(s)	343, 388, 549
BspACI	CCGC	5 cut(s)	103, 272, 281, 753, 936
BspANI	GGCC	4 cut(s)	183, 299, 355, 615
BspCNI	CTCAG	1 cut(s)	682
BspLI	GGNNCC	5 cut(s)	7, 207, 243, 528, 624
BspMI	ACCTGC	1 cut(s)	98
BspPI	GGATC	1 cut(s)	351
BspT104I	TTCGAA	1 cut(s)	444
BspT107I	GGYRCC	1 cut(s)	526
BsrBI	CCGCTC	2 cut(s)	274, 283
BsrDI	GCAATG	1 cut(s)	718
BssECI	CCNNGG	4 cut(s)	78, 189, 250, 868
BssMI	GATC	3 cut(s)	343, 388, 549
BssT1I	CCWWGG	1 cut(s)	189
Bst2UI	CCWGG	3 cut(s)	53, 66, 79
Bst4CI	ACNGT	4 cut(s)	125, 251, 427, 497
Bst6I	CTCTTC	2 cut(s)	528, 683
BstBI	TTCGAA	1 cut(s)	444
BstC8I	GCNNGC	2 cut(s)	730, 734
BstDEI	CTNAG	3 cut(s)	630, 669, 903
BstDSI	CCRYGG	2 cut(s)	250, 868
BstKTI	GATC	3 cut(s)	346, 391, 552
BstMAI	GTCTC	1 cut(s)	750
BstMBI	GATC	3 cut(s)	343, 388, 549
BstMWI	GCNNNNNNNGC	2 cut(s)	280, 908
BstNI	CCWGG	3 cut(s)	53, 66, 79
BstNSI	RCATGY	2 cut(s)	318, 732
BstSCI	CCNGG	3 cut(s)	51, 64, 77
BstSLI	GKGCMC	3 cut(s)	112, 529, 816
BstX2I	RGATCY	2 cut(s)	343, 388
BstYI	RGATCY	2 cut(s)	343, 388
BsuI	GTATCC	1 cut(s)	450
BsuRI	GGCC	4 cut(s)	183, 299, 355, 615
BtgI	CCRYGG	2 cut(s)	250, 868
BtsI	GCAGTG	1 cut(s)	112
BtsIMutI	CAGTG	2 cut(s)	112, 423
BveI	ACCTGC	1 cut(s)	98
Cac8I	GCNNGC	2 cut(s)	730, 734
Csp6I	GTAC	1 cut(s)	142
CspCI	CAANNNNNGTGG	2 cut(s)	574, 609
CviAII	CATG	8 cut(s)	10, 277, 295, 315, 349, 602, 682, 729
CviQI	GTAC	1 cut(s)	142
DdeI	CTNAG	3 cut(s)	630, 669, 903
DpnI	GATC	3 cut(s)	345, 390, 551
DpnII	GATC	3 cut(s)	343, 388, 549
EaeI	YGGCCR	2 cut(s)	181, 297
Eam1104I	CTCTTC	2 cut(s)	528, 683
EarI	CTCTTC	2 cut(s)	528, 683
Ecl136II	GAGCTC	1 cut(s)	28
Eco130I	CCWWGG	1 cut(s)	189
Eco24I	GRGCYC	1 cut(s)	30
Eco53kI	GAGCTC	1 cut(s)	28
Eco57I	CTGAAG	1 cut(s)	683
Eco88I	CYCGRG	2 cut(s)	407, 617
EcoICRI	GAGCTC	1 cut(s)	28
EcoRII	CCWGG	3 cut(s)	51, 64, 77
EcoT14I	CCWWGG	1 cut(s)	189
EcoT38I	GRGCYC	1 cut(s)	30
ErhI	CCWWGG	1 cut(s)	189
FaeI	CATG	8 cut(s)	13, 280, 298, 318, 352, 605, 685, 732
FaqI	GGGAC	1 cut(s)	425
FatI	CATG	8 cut(s)	9, 276, 294, 314, 348, 601, 681, 728
FauI	CCCGC	1 cut(s)	279
FblI	GTMKAC	2 cut(s)	659, 828
Fnu4HI	GCNGC	1 cut(s)	281
FriOI	GRGCYC	1 cut(s)	30
Fsp4HI	GCNGC	1 cut(s)	281
GluI	GCNGC	1 cut(s)	281
GsaI	CCCAGC	1 cut(s)	779
GsuI	CTGGAG	1 cut(s)	35
HaeIII	GGCC	4 cut(s)	183, 299, 355, 615
HapII	CCGG	1 cut(s)	896
Hin1II	CATG	8 cut(s)	13, 280, 298, 318, 352, 605, 685, 732
HindIII	AAGCTT	1 cut(s)	448
HinfI	GANTC	4 cut(s)	476, 656, 763, 914
HpaII	CCGG	1 cut(s)	896
HphI	GGTGA	3 cut(s)	574, 650, 701
Hpy166II	GTNNAC	4 cut(s)	110, 660, 786, 829
Hpy188I	TCNGA	2 cut(s)	561, 627
Hpy188III	TCNNGA	2 cut(s)	226, 454
Hpy8I	GTNNAC	4 cut(s)	110, 660, 786, 829
HpyAV	CCTTC	4 cut(s)	42, 284, 675, 901
HpyCH4III	ACNGT	4 cut(s)	125, 251, 427, 497
HpyCH4IV	ACGT	2 cut(s)	309, 788
HpyCH4V	TGCA	2 cut(s)	93, 110
HpyF10VI	GCNNNNNNNGC	2 cut(s)	280, 908
HpyF3I	CTNAG	3 cut(s)	630, 669, 903
HpySE526I	ACGT	2 cut(s)	309, 788
Hsp92II	CATG	8 cut(s)	13, 280, 298, 318, 352, 605, 685, 732
Kzo9I	GATC	3 cut(s)	343, 388, 549
LmnI	GCTCC	4 cut(s)	33, 80, 241, 708
LweI	GCATC	1 cut(s)	745
MaeII	ACGT	2 cut(s)	309, 788
MaeIII	GTNAC	2 cut(s)	310, 539
MalI	GATC	3 cut(s)	345, 390, 551
MbiI	CCGCTC	2 cut(s)	274, 283
MboI	GATC	3 cut(s)	343, 388, 549
MboII	GAAGA	6 cut(s)	128, 494, 497, 545, 670, 757
MflI	RGATCY	2 cut(s)	343, 388
MhlI	GDGCHC	4 cut(s)	30, 112, 529, 816
MlsI	TGGCCA	2 cut(s)	183, 299
MluCI	AATT	3 cut(s)	40, 371, 881
MluNI	TGGCCA	2 cut(s)	183, 299
MlyI	GAGTC	3 cut(s)	665, 757, 923
MmeI	TCCRAC	1 cut(s)	650
MnlI	CCTC	8 cut(s)	59, 196, 221, 232, 613, 626, 857, 892
Mox20I	TGGCCA	2 cut(s)	183, 299
MscI	TGGCCA	2 cut(s)	183, 299
MseI	TTAA	2 cut(s)	792, 942
Msp20I	TGGCCA	2 cut(s)	183, 299
MspI	CCGG	1 cut(s)	896
MspR9I	CCNGG	3 cut(s)	53, 66, 79
MvaI	CCWGG	3 cut(s)	53, 66, 79
MwoI	GCNNNNNNNGC	2 cut(s)	280, 908
NdeII	GATC	3 cut(s)	343, 388, 549
NlaIII	CATG	8 cut(s)	13, 280, 298, 318, 352, 605, 685, 732
NlaIV	GGNNCC	5 cut(s)	7, 207, 243, 528, 624
NmuCI	GTSAC	1 cut(s)	539
NspI	RCATGY	2 cut(s)	318, 732
NspV	TTCGAA	1 cut(s)	444
PaeI	GCATGC	1 cut(s)	732
PaeR7I	CTCGAG	1 cut(s)	617
PaqCI	CACCTGC	1 cut(s)	98
PcsI	WCGNNNNNNNCGW	1 cut(s)	615
PfeI	GAWTC	1 cut(s)	476
PfoI	TCCNGGA	1 cut(s)	51
PkrI	GCNGC	1 cut(s)	282
PleI	GAGTC	3 cut(s)	664, 757, 922
PpsI	GAGTC	3 cut(s)	664, 757, 922
Psp124BI	GAGCTC	1 cut(s)	30
Psp1406I	AACGTT	1 cut(s)	309
Psp6I	CCWGG	3 cut(s)	51, 64, 77
PspFI	CCCAGC	1 cut(s)	775
PspGI	CCWGG	3 cut(s)	51, 64, 77
PspN4I	GGNNCC	5 cut(s)	7, 207, 243, 528, 624
PspXI	VCTCGAGB	1 cut(s)	617
PsuI	RGATCY	2 cut(s)	343, 388
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
SacI	GAGCTC	1 cut(s)	30
SaqAI	TTAA	2 cut(s)	792, 942
SatI	GCNGC	1 cut(s)	281
Sau3AI	GATC	3 cut(s)	343, 388, 549
SchI	GAGTC	3 cut(s)	665, 757, 923
ScrFI	CCNGG	3 cut(s)	53, 66, 79
SduI	GDGCHC	4 cut(s)	30, 112, 529, 816
SfaNI	GCATC	1 cut(s)	745
Sfr274I	CTCGAG	1 cut(s)	617
SfuI	TTCGAA	1 cut(s)	444
SlaI	CTCGAG	1 cut(s)	617
SmlI	CTYRAG	3 cut(s)	70, 515, 617
SmoI	CTYRAG	3 cut(s)	70, 515, 617
SphI	GCATGC	1 cut(s)	732
Sse9I	AATT	3 cut(s)	40, 371, 881
SsiI	CCGC	5 cut(s)	103, 272, 281, 753, 936
SstI	GAGCTC	1 cut(s)	30
StyD4I	CCNGG	3 cut(s)	51, 64, 77
StyI	CCWWGG	1 cut(s)	189
TaaI	ACNGT	4 cut(s)	125, 251, 427, 497
TaiI	ACGT	2 cut(s)	312, 791
TaqI	TCGA	8 cut(s)	201, 213, 261, 444, 618, 739, 766, 861
TasI	AATT	3 cut(s)	40, 371, 881
TauI	GCSGC	1 cut(s)	283
TfiI	GAWTC	1 cut(s)	476
Tru1I	TTAA	2 cut(s)	792, 942
Tru9I	TTAA	2 cut(s)	792, 942
TscAI	CASTG	2 cut(s)	112, 430
TseFI	GTSAC	1 cut(s)	539
Tsp45I	GTSAC	1 cut(s)	539
TspDTI	ATGAA	4 cut(s)	303, 489, 670, 865
TspGWI	ACGGA	2 cut(s)	375, 584
TspRI	CASTG	2 cut(s)	112, 430
VneI	GTGCAC	1 cut(s)	108
XapI	RAATTY	2 cut(s)	371, 881
XceI	RCATGY	2 cut(s)	318, 732
XhoI	CTCGAG	1 cut(s)	617
XmiI	GTMKAC	2 cut(s)	659, 828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.