Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001604

Physical Location & Seq

Genomic Coordinates Forward (+)

19202227 .. 19204113

Gene Structure 1887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G263000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGGTTCCGTGCCTAAGCTCCCTACCATCAATTTCTCCATTGAAGACTTGAAGCCTGGTTCAGCTTCTTGGCTGTCCACCGCCAAACAAGTCCGGTTTGCGCTCGAAGAATACGGCTGTTTCGTGGCACTGTATGAGCAAATTTCTGAGGAACTATTAAACAACATGTTTGGCCAAGCCAAAGATTTGTTTGAGATCCCCAAAGAAAACAAAGTCAAGAACGTTGGCGAGGAACCCTATCGTGGGCATATGGGTCCAAACCCTGGCTTGCCACTCTATGAAAGCTTGTGCATTGATAACGTGACATCCCCACAAGAAACCCAAAAGTTCAAAAATCTCATGTGGCCTGAAGGAAAGAGCAACTTCTGTGAAACCACAGATTCATTTGGGCAGTTATTGGCAGATTTGGAACGCACTGTTGAGCAATTGCTGTTCGAAAGCTATGGGATTGGAAAGCAGTACGAGTCGGTTGGTAGTTCCAACGGTCACCTTCTTAGATTCATCAAATATACAGTACCAGAGGACAACGATACCACCTTAAGGTTTCCGAGCCACACAGACATAAACTTCACCACCATTGTTGTTCAGCATGATATCGCTGGCTTGGAGGTCAAAACCAAGGAAGGAGATTGGATTAATGTTGAGTGTAAACCCTCACAAGTACAGTTGGTATTCATGGCGGGTGATGGATTGCAGGTATGGAGCAATGACAGAGTGAAAGCTTGCCACCACAGAGTGAAGCACTGTGGAAACAAGACACGATACTCAATTGGGCTCTTTACATTCAATAATGGGGTTTTCCAAGTGCCAGATGAATTAGTGGACGAAAGCCACCCACTCCTCTATAACGCATTTGATAGCCGTGCCTTTATTCGAAAATATGCTACTACTCCTGAGCTCAAGAAGGAAGCTTCTCCTATCAAGGCCTTCGCCGGTGTCAAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

316

Amino Acids

35.5

Weight (kDa)

5.57

Isoelectric Point (pI)

32.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001604)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28210 FvH4_6g42700 FvH4_7g15780
malus_domestica	MD03G1085000.v1.1 MD05G1208700.v1.1 MD10G1195200.v1.1 MD11G1092600.v1.1
prunus_persica	Prupe.4G262900_v2.0.a1 Prupe.4G263000_v2.0.a1 Prupe.4G263100_v2.0.a1 Prupe.4G264400_v2.0.a1
pyrus_communis	pycom03g06720 pycom05g19460 pycom10g16890 pycom11g07800 pycom11g07820
rosa_chinensis	RchiOBHm_Chr1g0358581 RchiOBHm_Chr4g0395841 RchiOBHm_Chr4g0444921 RchiOBHm_Chr5g0050321 RchiOBHm_Chr5g0050341
rosa_laevigata	RLG00000027944 RLG00000034696 RLG00000034697 RLG00000034698
rosa_multiflora	Rmu_sc0001103.1_g000025 Rmu_sc0001609.1_g000014 Rmu_sc0005060.1_g000004 Rmu_sc0005060.1_g000006
rosa_roxburghii	Rroxscaffold_1G00027250 Rroxscaffold_1G00030670 Rroxscaffold_1G00030700 Rroxscaffold_4G00297680 Rroxscaffold_4G00297780
rosa_rugosa	Rorug01G0262600 Rorug01G0262700 Rorug05G0260000 Rorug05G0260000 Rorug05G0260100
rosa_samantha	Rh1BG243900 Rh1CG260900 Rh4BG429600 Rh4DG425500 Rh5AG331700 Rh5AG331800 Rh5CG369400 Rh5CG369500
rosa_wichuraiana	Rw1G024650 Rw5G031370 Rw5G031380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	685
AccB7I	CCANNNNNTGG	1 cut(s)	263
AciI	CCGC	2 cut(s)	81, 680
AclI	AACGTT	1 cut(s)	222
AclWI	GGATC	1 cut(s)	190
AcoI	YGGCCR	1 cut(s)	172
AcsI	RAATTY	1 cut(s)	141
AcuI	CTGAAG	1 cut(s)	369
AdeI	CACNNNGTG	1 cut(s)	736
AfaI	GTAC	3 cut(s)	461, 516, 663
AfiI	CCNNNNNNNGG	4 cut(s)	242, 243, 263, 540
AflII	CTTAAG	1 cut(s)	538
AflIII	ACRYGT	1 cut(s)	165
AgsI	TTSAA	4 cut(s)	44, 52, 331, 787
AjnI	CCWGG	2 cut(s)	55, 262
AluBI	AGCT	8 cut(s)	19, 65, 285, 441, 722, 898, 911, 944
AluI	AGCT	8 cut(s)	19, 65, 285, 441, 722, 898, 911, 944
Alw21I	GWGCWC	1 cut(s)	900
AlwI	GGATC	1 cut(s)	190
AoxI	GGCC	3 cut(s)	172, 344, 924
ApoI	RAATTY	1 cut(s)	141
AseI	ATTAAT	1 cut(s)	636
AspLEI	GCGC	1 cut(s)	103
AspS9I	GGNCC	1 cut(s)	254
AsuHPI	GGTGA	3 cut(s)	479, 562, 695
AsuII	TTCGAA	2 cut(s)	435, 874
AvaII	GGWCC	1 cut(s)	254
BalI	TGGCCA	1 cut(s)	174
BanII	GRGCYC	2 cut(s)	777, 900
BbsI	GAAGAC	1 cut(s)	51
Bbv12I	GWGCWC	1 cut(s)	900
BccI	CCATC	2 cut(s)	35, 680
BceAI	ACGGC	2 cut(s)	130, 846
BciT130I	CCWGG	2 cut(s)	57, 264
BfrI	CTTAAG	1 cut(s)	538
BfuAI	ACCTGC	1 cut(s)	685
Bme1390I	CCNGG	2 cut(s)	57, 264
Bme18I	GGWCC	1 cut(s)	254
BmgT120I	GGNCC	1 cut(s)	254
BmiI	GGNNCC	3 cut(s)	7, 234, 255
BmrFI	CCNGG	2 cut(s)	57, 264
BpiI	GAAGAC	1 cut(s)	51
Bpu10I	CCTNAGC	2 cut(s)	15, 894
Bpu14I	TTCGAA	2 cut(s)	435, 874
BpuEI	CTTGAG	1 cut(s)	884
BsaJI	CCNNGG	2 cut(s)	262, 618
BsaWI	WCCGGW	1 cut(s)	93
Bsc4I	CCNNNNNNNGG	4 cut(s)	242, 243, 263, 540
Bse118I	RCCGGY	1 cut(s)	932
Bse3DI	GCAATG	1 cut(s)	712
BseBI	CCWGG	2 cut(s)	57, 264
BseDI	CCNNGG	2 cut(s)	262, 618
BseGI	GGATG	1 cut(s)	305
BseLI	CCNNNNNNNGG	4 cut(s)	242, 243, 263, 540
BseMI	GCAATG	1 cut(s)	712
BseMII	CTCAG	2 cut(s)	138, 885
BseRI	GAGGAG	1 cut(s)	830
BshFI	GGCC	3 cut(s)	174, 346, 926
BsiHKAI	GWGCWC	1 cut(s)	900
BsiSI	CCGG	2 cut(s)	94, 933
BslI	CCNNNNNNNGG	4 cut(s)	242, 243, 263, 540
BsnI	GGCC	3 cut(s)	174, 346, 926
Bsp119I	TTCGAA	2 cut(s)	435, 874
Bsp1286I	GDGCHC	2 cut(s)	777, 900
Bsp143I	GATC	1 cut(s)	195
BspACI	CCGC	2 cut(s)	81, 680
BspANI	GGCC	3 cut(s)	174, 346, 926
BspCNI	CTCAG	2 cut(s)	139, 886
BspLI	GGNNCC	3 cut(s)	7, 234, 255
BspMI	ACCTGC	1 cut(s)	685
BspPI	GGATC	1 cut(s)	190
BspT104I	TTCGAA	2 cut(s)	435, 874
BspTI	CTTAAG	1 cut(s)	538
BsrDI	GCAATG	1 cut(s)	712
BsrFI	RCCGGY	1 cut(s)	932
BssAI	RCCGGY	1 cut(s)	932
BssECI	CCNNGG	2 cut(s)	262, 618
BssMI	GATC	1 cut(s)	195
BssT1I	CCWWGG	1 cut(s)	618
Bst2UI	CCWGG	2 cut(s)	57, 264
Bst4CI	ACNGT	6 cut(s)	132, 418, 485, 514, 666, 746
BstAFI	CTTAAG	1 cut(s)	538
BstBI	TTCGAA	2 cut(s)	435, 874
BstC8I	GCNNGC	3 cut(s)	269, 601, 724
BstDEI	CTNAG	4 cut(s)	15, 147, 494, 894
BstEII	GGTNACC	1 cut(s)	485
BstF5I	GGATG	1 cut(s)	305
BstHHI	GCGC	1 cut(s)	103
BstKTI	GATC	1 cut(s)	198
BstMBI	GATC	1 cut(s)	195
BstNI	CCWGG	2 cut(s)	57, 264
BstNSI	RCATGY	1 cut(s)	169
BstPI	GGTNACC	1 cut(s)	485
BstSCI	CCNGG	2 cut(s)	55, 262
BstV2I	GAAGAC	1 cut(s)	51
BstX2I	RGATCY	1 cut(s)	195
BstYI	RGATCY	1 cut(s)	195
BsuRI	GGCC	3 cut(s)	174, 346, 926
BtsCI	GGATG	1 cut(s)	305
BtsIMutI	CAGTG	3 cut(s)	128, 414, 742
BveI	ACCTGC	1 cut(s)	685
Cac8I	GCNNGC	3 cut(s)	269, 601, 724
CfoI	GCGC	1 cut(s)	103
Cfr10I	RCCGGY	1 cut(s)	932
Cfr13I	GGNCC	1 cut(s)	254
Csp6I	GTAC	3 cut(s)	460, 515, 662
CspCI	CAANNNNNGTGG	2 cut(s)	562, 597
CviAII	CATG	4 cut(s)	166, 340, 590, 676
CviQI	GTAC	3 cut(s)	460, 515, 662
DdeI	CTNAG	4 cut(s)	15, 147, 494, 894
DpnI	GATC	1 cut(s)	197
DpnII	GATC	1 cut(s)	195
DraIII	CACNNNGTG	1 cut(s)	736
EaeI	YGGCCR	1 cut(s)	172
Ecl136II	GAGCTC	1 cut(s)	898
Eco130I	CCWWGG	1 cut(s)	618
Eco147I	AGGCCT	1 cut(s)	926
Eco24I	GRGCYC	2 cut(s)	777, 900
Eco32I	GATATC	1 cut(s)	595
Eco47I	GGWCC	1 cut(s)	254
Eco53kI	GAGCTC	1 cut(s)	898
Eco57I	CTGAAG	1 cut(s)	369
Eco91I	GGTNACC	1 cut(s)	485
EcoICRI	GAGCTC	1 cut(s)	898
EcoO65I	GGTNACC	1 cut(s)	485
EcoRII	CCWGG	2 cut(s)	55, 262
EcoRV	GATATC	1 cut(s)	595
EcoT14I	CCWWGG	1 cut(s)	618
EcoT38I	GRGCYC	2 cut(s)	777, 900
ErhI	CCWWGG	1 cut(s)	618
FaeI	CATG	4 cut(s)	169, 343, 593, 679
FalI	AAGNNNNNCTT	2 cut(s)	347, 379
FatI	CATG	4 cut(s)	165, 339, 589, 675
FauI	CCCGC	1 cut(s)	673
FauNDI	CATATG	1 cut(s)	249
FokI	GGATG	1 cut(s)	292
FriOI	GRGCYC	2 cut(s)	777, 900
GlaI	GCGC	1 cut(s)	102
HaeIII	GGCC	3 cut(s)	174, 346, 926
HapII	CCGG	2 cut(s)	94, 933
HhaI	GCGC	1 cut(s)	103
Hin1II	CATG	4 cut(s)	169, 343, 593, 679
Hin6I	GCGC	1 cut(s)	101
HinP1I	GCGC	1 cut(s)	101
HindIII	AAGCTT	4 cut(s)	283, 720, 909, 942
HinfI	GANTC	3 cut(s)	380, 464, 498
HpaII	CCGG	2 cut(s)	94, 933
HphI	GGTGA	3 cut(s)	479, 562, 695
Hpy166II	GTNNAC	3 cut(s)	78, 650, 823
Hpy188I	TCNGA	2 cut(s)	148, 549
Hpy188III	TCNNGA	3 cut(s)	217, 893, 901
Hpy8I	GTNNAC	3 cut(s)	78, 650, 823
HpyAV	CCTTC	5 cut(s)	344, 500, 617, 898, 937
HpyCH4III	ACNGT	6 cut(s)	132, 418, 485, 514, 666, 746
HpyCH4IV	ACGT	2 cut(s)	222, 300
HpyCH4V	TGCA	2 cut(s)	291, 694
HpyF3I	CTNAG	4 cut(s)	15, 147, 494, 894
HpySE526I	ACGT	2 cut(s)	222, 300
Hsp92II	CATG	4 cut(s)	169, 343, 593, 679
HspAI	GCGC	1 cut(s)	101
Kzo9I	GATC	1 cut(s)	195
LmnI	GCTCC	2 cut(s)	24, 702
MaeII	ACGT	2 cut(s)	222, 300
MaeIII	GTNAC	2 cut(s)	301, 485
MalI	GATC	1 cut(s)	197
MboI	GATC	1 cut(s)	195
MboII	GAAGA	2 cut(s)	56, 119
MfeI	CAATTG	2 cut(s)	425, 768
MflI	RGATCY	1 cut(s)	195
MhlI	GDGCHC	2 cut(s)	777, 900
MlsI	TGGCCA	1 cut(s)	174
MluCI	AATT	5 cut(s)	31, 141, 425, 768, 815
MluNI	TGGCCA	1 cut(s)	174
MlyI	GAGTC	1 cut(s)	473
MmeI	TCCRAC	1 cut(s)	504
MnlI	CCTC	6 cut(s)	142, 223, 514, 601, 664, 851
Mox20I	TGGCCA	1 cut(s)	174
MscI	TGGCCA	1 cut(s)	174
MseI	TTAA	4 cut(s)	158, 539, 636, 946
Msp20I	TGGCCA	1 cut(s)	174
MspCI	CTTAAG	1 cut(s)	538
MspI	CCGG	2 cut(s)	94, 933
MspR9I	CCNGG	2 cut(s)	57, 264
MunI	CAATTG	2 cut(s)	425, 768
MvaI	CCWGG	2 cut(s)	57, 264
NdeI	CATATG	1 cut(s)	249
NdeII	GATC	1 cut(s)	195
NlaIII	CATG	4 cut(s)	169, 343, 593, 679
NlaIV	GGNNCC	3 cut(s)	7, 234, 255
NmuCI	GTSAC	2 cut(s)	301, 485
NspI	RCATGY	1 cut(s)	169
NspV	TTCGAA	2 cut(s)	435, 874
PceI	AGGCCT	1 cut(s)	926
PciI	ACATGT	1 cut(s)	165
PcsI	WCGNNNNNNNCGW	1 cut(s)	120
PfeI	GAWTC	2 cut(s)	380, 498
PflMI	CCANNNNNTGG	1 cut(s)	263
PleI	GAGTC	1 cut(s)	472
PpsI	GAGTC	1 cut(s)	472
PscI	ACATGT	1 cut(s)	165
PshBI	ATTAAT	1 cut(s)	636
Psp124BI	GAGCTC	1 cut(s)	900
Psp1406I	AACGTT	1 cut(s)	222
Psp6I	CCWGG	2 cut(s)	55, 262
PspEI	GGTNACC	1 cut(s)	485
PspGI	CCWGG	2 cut(s)	55, 262
PspN4I	GGNNCC	3 cut(s)	7, 234, 255
PspPI	GGNCC	1 cut(s)	254
PsuI	RGATCY	1 cut(s)	195
RsaI	GTAC	3 cut(s)	461, 516, 663
RsaNI	GTAC	3 cut(s)	460, 515, 662
SacI	GAGCTC	1 cut(s)	900
SaqAI	TTAA	4 cut(s)	158, 539, 636, 946
Sau3AI	GATC	1 cut(s)	195
Sau96I	GGNCC	1 cut(s)	254
SchI	GAGTC	1 cut(s)	473
ScrFI	CCNGG	2 cut(s)	57, 264
SduI	GDGCHC	2 cut(s)	777, 900
SfuI	TTCGAA	2 cut(s)	435, 874
SgrAI	CRCCGGYG	1 cut(s)	932
SinI	GGWCC	1 cut(s)	254
SmlI	CTYRAG	2 cut(s)	538, 899
SmoI	CTYRAG	2 cut(s)	538, 899
Sse9I	AATT	5 cut(s)	31, 141, 425, 768, 815
SseBI	AGGCCT	1 cut(s)	926
SsiI	CCGC	2 cut(s)	81, 680
SstI	GAGCTC	1 cut(s)	900
StuI	AGGCCT	1 cut(s)	926
StyD4I	CCNGG	2 cut(s)	55, 262
StyI	CCWWGG	1 cut(s)	618
TaaI	ACNGT	6 cut(s)	132, 418, 485, 514, 666, 746
TaiI	ACGT	2 cut(s)	225, 303
TaqI	TCGA	3 cut(s)	105, 435, 874
TasI	AATT	5 cut(s)	31, 141, 425, 768, 815
TatI	WGTACW	1 cut(s)	661
TfiI	GAWTC	2 cut(s)	380, 498
Tru1I	TTAA	4 cut(s)	158, 539, 636, 946
Tru9I	TTAA	4 cut(s)	158, 539, 636, 946
TscAI	CASTG	3 cut(s)	135, 421, 749
TseFI	GTSAC	2 cut(s)	301, 485
Tsp45I	GTSAC	2 cut(s)	301, 485
TspDTI	ATGAA	5 cut(s)	294, 372, 490, 664, 828
TspRI	CASTG	3 cut(s)	135, 421, 749
Van91I	CCANNNNNTGG	1 cut(s)	263
Vha464I	CTTAAG	1 cut(s)	538
VpaK11BI	GGWCC	1 cut(s)	254
VspI	ATTAAT	1 cut(s)	636
XapI	RAATTY	1 cut(s)	141
XceI	RCATGY	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.