Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0001604

Physical Location & Seq

Genomic Coordinates Reverse (-)

5243482 .. 5245434

Gene Structure 1953 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g06720.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGACTCGTTAACACTTCCAAAGCTTCCTACCATCGATTTCTCCGTCGATGTCTTGAAGTCTGGCTCAAGTTCTTGGCTGTCGACCTCCCAAAAAGTCCGGTATGCACTCGAAGAGTACGGTGGCTTCGTGGCGCAGTACGATCAAATTTCTGAACAACTTCTGAACGATATCTTTGGCCAGGCCAAAGATTTGTTTGAGGTTCCTTTGGAAAACAAAGTGAAGAGCGTTAGTAAAGAACCATATCGTGGGTATATTGGACCGAACCACCTTATGCCACTCTATGAAGGTATCGCCATTGATAATGTCACATCTCCAGAAGAAACTCAGAAGTTCAAAAATCTCATGTGGCCCGATGGAAAGAGCAATTTCTGTGAAACTACAGATTCATTTGCCCAATTACTATCAGAGTTGGAGCACAAAGTGGAACAAATGCTATTCGAAAGCTATGGAGCAGAAAAGCAGTACGAGTCTGTTGCTAGTGCCAACAGCCACCTTCTTAGATTCCTCAAGTATAACAAACCAGAGGAAGCTGATCGTACAACCTTGAGATTTGCGAGCCATACAGACAAGAACTTCACCACCATCGTCGTTCAGCACGACGTTGGTGGTTTGGAGGTTAAAACAAAGGATGGTGTTTGGATTAGCGTTGAGTCGGTACCTTCACAGTTCGTGTTCTTGGCCGGTGATGGATTGCAGGTATGGAGCAACGATAGAATAAAAGCTTGTCATCATCGAGTGAAGCATTGTGGAGACAAGACGAGGTACTCACTAGGGTTGTTTACATTCAACAACGGAATAATACAAGTACCACAAGAACTGGTGGACGAGAGGCACCCACTGCTCTATAACCCACTTGACAGTCTTGAGTATATAAGGTTTTACAGTAGGGGTGAGGCCAGGAACTCAGTCTCTCCTGTCAATACCTTTTGCGGTGTTACAAATTCTGCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

319

Amino Acids

35.97

Weight (kDa)

5.43

Isoelectric Point (pI)

31.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001604)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28210 FvH4_6g42700 FvH4_7g15780
malus_domestica	MD03G1085000.v1.1 MD05G1208700.v1.1 MD10G1195200.v1.1 MD11G1092600.v1.1
prunus_persica	Prupe.4G262900_v2.0.a1 Prupe.4G263000_v2.0.a1 Prupe.4G263100_v2.0.a1 Prupe.4G264400_v2.0.a1
pyrus_communis	pycom03g06720 pycom05g19460 pycom10g16890 pycom11g07800 pycom11g07820
rosa_chinensis	RchiOBHm_Chr1g0358581 RchiOBHm_Chr4g0395841 RchiOBHm_Chr4g0444921 RchiOBHm_Chr5g0050321 RchiOBHm_Chr5g0050341
rosa_laevigata	RLG00000027944 RLG00000034696 RLG00000034697 RLG00000034698
rosa_multiflora	Rmu_sc0001103.1_g000025 Rmu_sc0001609.1_g000014 Rmu_sc0005060.1_g000004 Rmu_sc0005060.1_g000006
rosa_roxburghii	Rroxscaffold_1G00027250 Rroxscaffold_1G00030670 Rroxscaffold_1G00030700 Rroxscaffold_4G00297680 Rroxscaffold_4G00297780
rosa_rugosa	Rorug01G0262600 Rorug01G0262700 Rorug05G0260000 Rorug05G0260000 Rorug05G0260100
rosa_samantha	Rh1BG243900 Rh1CG260900 Rh4BG429600 Rh4DG425500 Rh5AG331700 Rh5AG331800 Rh5CG369400 Rh5CG369500
rosa_wichuraiana	Rw1G024650 Rw5G031370 Rw5G031380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	688
Acc65I	GGTACC	1 cut(s)	658
AccB1I	GGYRCC	2 cut(s)	658, 834
AccB7I	CCANNNNNTGG	1 cut(s)	248
AccI	GTMKAC	1 cut(s)	83
AciI	CCGC	1 cut(s)	933
AcoI	YGGCCR	2 cut(s)	178, 681
AcsI	RAATTY	2 cut(s)	147, 943
AdeI	CACNNNGTG	1 cut(s)	424
AfaI	GTAC	7 cut(s)	119, 140, 467, 541, 660, 767, 810
AfiI	CCNNNNNNNGG	1 cut(s)	248
AgsI	TTSAA	3 cut(s)	58, 337, 790
AjnI	CCWGG	2 cut(s)	180, 899
AluBI	AGCT	5 cut(s)	25, 447, 533, 725, 953
AluI	AGCT	5 cut(s)	25, 447, 533, 725, 953
Alw21I	GWGCWC	1 cut(s)	420
Alw26I	GTCTC	2 cut(s)	747, 916
AoxI	GGCC	5 cut(s)	178, 183, 350, 681, 897
ApeKI	GCWGC	1 cut(s)	950
ApoI	RAATTY	2 cut(s)	147, 943
Asp700I	GAANNNNTTC	1 cut(s)	159
Asp718I	GGTACC	1 cut(s)	658
AspLEI	GCGC	1 cut(s)	136
AspS9I	GGNCC	2 cut(s)	260, 351
AsuHPI	GGTGA	3 cut(s)	571, 698, 905
AsuII	TTCGAA	1 cut(s)	441
AvaII	GGWCC	1 cut(s)	260
BalI	TGGCCA	1 cut(s)	180
BanI	GGYRCC	2 cut(s)	658, 834
BarI	GAAGNNNNNNTAC	2 cut(s)	110, 142
Bbv12I	GWGCWC	1 cut(s)	420
BccI	CCATC	5 cut(s)	41, 350, 593, 626, 683
BcgI	CGANNNNNNTGC	2 cut(s)	458, 492
BciT130I	CCWGG	2 cut(s)	182, 901
BcoDI	GTCTC	2 cut(s)	747, 916
BfaI	CTAG	2 cut(s)	480, 773
BfmI	CTRYAG	2 cut(s)	381, 948
BfuAI	ACCTGC	1 cut(s)	688
BisI	GCNGC	1 cut(s)	951
BlsI	GCNGC	1 cut(s)	952
Bme1390I	CCNGG	2 cut(s)	182, 901
Bme18I	GGWCC	1 cut(s)	260
BmgT120I	GGNCC	2 cut(s)	260, 351
BmiI	GGNNCC	3 cut(s)	204, 660, 836
BmrFI	CCNGG	2 cut(s)	182, 901
BpmI	CTGGAG	1 cut(s)	300
Bpu14I	TTCGAA	1 cut(s)	441
BpuEI	CTTGAG	4 cut(s)	52, 494, 568, 887
Bsa29I	ATCGAT	1 cut(s)	36
BsaWI	WCCGGW	1 cut(s)	99
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse118I	RCCGGY	1 cut(s)	683
Bse1I	ACTGG	1 cut(s)	825
BseBI	CCWGG	2 cut(s)	182, 901
BseCI	ATCGAT	1 cut(s)	36
BseGI	GGATG	1 cut(s)	637
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseMII	CTCAG	2 cut(s)	341, 921
BseNI	ACTGG	1 cut(s)	825
BshFI	GGCC	5 cut(s)	180, 185, 352, 683, 899
BshNI	GGYRCC	2 cut(s)	658, 834
BshVI	ATCGAT	1 cut(s)	36
BsiHKAI	GWGCWC	1 cut(s)	420
BsiSI	CCGG	2 cut(s)	100, 684
BslI	CCNNNNNNNGG	1 cut(s)	248
BsmAI	GTCTC	2 cut(s)	747, 916
BsnI	GGCC	5 cut(s)	180, 185, 352, 683, 899
Bsp119I	TTCGAA	1 cut(s)	441
Bsp1286I	GDGCHC	1 cut(s)	420
Bsp143I	GATC	2 cut(s)	142, 535
BspACI	CCGC	1 cut(s)	933
BspANI	GGCC	5 cut(s)	180, 185, 352, 683, 899
BspCNI	CTCAG	2 cut(s)	340, 920
BspDI	ATCGAT	1 cut(s)	36
BspLI	GGNNCC	3 cut(s)	204, 660, 836
BspMAI	CTGCAG	1 cut(s)	952
BspMI	ACCTGC	1 cut(s)	688
BspQI	GCTCTTC	1 cut(s)	218
BspT104I	TTCGAA	1 cut(s)	441
BspT107I	GGYRCC	2 cut(s)	658, 834
BsrFI	RCCGGY	1 cut(s)	683
BsrI	ACTGG	1 cut(s)	825
BssAI	RCCGGY	1 cut(s)	683
BssMI	GATC	2 cut(s)	142, 535
Bst2UI	CCWGG	2 cut(s)	182, 901
Bst4CI	ACNGT	4 cut(s)	122, 669, 863, 887
Bst6I	CTCTTC	2 cut(s)	108, 218
BstAPI	GCANNNNNTGC	1 cut(s)	841
BstBI	TTCGAA	1 cut(s)	441
BstC8I	GCNNGC	1 cut(s)	559
BstDEI	CTNAG	3 cut(s)	327, 500, 907
BstF5I	GGATG	1 cut(s)	637
BstHHI	GCGC	1 cut(s)	136
BstKTI	GATC	2 cut(s)	145, 538
BstMAI	GTCTC	2 cut(s)	747, 916
BstMBI	GATC	2 cut(s)	142, 535
BstMWI	GCNNNNNNNGC	1 cut(s)	841
BstNI	CCWGG	2 cut(s)	182, 901
BstSCI	CCNGG	2 cut(s)	180, 899
BstSFI	CTRYAG	2 cut(s)	381, 948
Bsu15I	ATCGAT	1 cut(s)	36
BsuRI	GGCC	5 cut(s)	180, 185, 352, 683, 899
BsuTUI	ATCGAT	1 cut(s)	36
BtsCI	GGATG	1 cut(s)	637
BtsI	GCAGTG	1 cut(s)	839
BtsIMutI	CAGTG	1 cut(s)	839
BveI	ACCTGC	1 cut(s)	688
Cac8I	GCNNGC	1 cut(s)	559
CfoI	GCGC	1 cut(s)	136
Cfr10I	RCCGGY	1 cut(s)	683
Cfr13I	GGNCC	2 cut(s)	260, 351
ClaI	ATCGAT	1 cut(s)	36
Csp6I	GTAC	7 cut(s)	118, 139, 466, 540, 659, 766, 809
CviAII	CATG	1 cut(s)	346
CviQI	GTAC	7 cut(s)	118, 139, 466, 540, 659, 766, 809
DdeI	CTNAG	3 cut(s)	327, 500, 907
DpnI	GATC	2 cut(s)	144, 537
DpnII	GATC	2 cut(s)	142, 535
DraIII	CACNNNGTG	1 cut(s)	424
EaeI	YGGCCR	2 cut(s)	178, 681
Eam1104I	CTCTTC	2 cut(s)	108, 218
EarI	CTCTTC	2 cut(s)	108, 218
Eco32I	GATATC	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	260
EcoRII	CCWGG	2 cut(s)	180, 899
EcoRV	GATATC	1 cut(s)	172
FaeI	CATG	1 cut(s)	349
FatI	CATG	1 cut(s)	345
FblI	GTMKAC	1 cut(s)	83
Fnu4HI	GCNGC	1 cut(s)	951
FokI	GGATG	1 cut(s)	644
Fsp4HI	GCNGC	1 cut(s)	951
FspBI	CTAG	2 cut(s)	480, 773
GlaI	GCGC	1 cut(s)	135
GluI	GCNGC	1 cut(s)	951
GsuI	CTGGAG	1 cut(s)	300
HaeIII	GGCC	5 cut(s)	180, 185, 352, 683, 899
HapII	CCGG	2 cut(s)	100, 684
HhaI	GCGC	1 cut(s)	136
Hin1II	CATG	1 cut(s)	349
Hin6I	GCGC	1 cut(s)	134
HinP1I	GCGC	1 cut(s)	134
HincII	GTYRAC	2 cut(s)	12, 84
HindII	GTYRAC	2 cut(s)	12, 84
HindIII	AAGCTT	2 cut(s)	23, 723
HinfI	GANTC	5 cut(s)	5, 386, 470, 504, 653
HpaI	GTTAAC	1 cut(s)	12
HpaII	CCGG	2 cut(s)	100, 684
HphI	GGTGA	3 cut(s)	571, 698, 905
Hpy166II	GTNNAC	4 cut(s)	12, 84, 783, 826
Hpy188I	TCNGA	4 cut(s)	154, 165, 330, 409
Hpy188III	TCNNGA	3 cut(s)	55, 317, 866
Hpy8I	GTNNAC	4 cut(s)	12, 84, 783, 826
Hpy99I	CGWCG	3 cut(s)	50, 593, 605
HpyAV	CCTTC	3 cut(s)	281, 506, 672
HpyCH4III	ACNGT	4 cut(s)	122, 669, 863, 887
HpyCH4IV	ACGT	1 cut(s)	603
HpyCH4V	TGCA	3 cut(s)	107, 697, 950
HpyF10VI	GCNNNNNNNGC	1 cut(s)	841
HpyF3I	CTNAG	3 cut(s)	327, 500, 907
HpySE526I	ACGT	1 cut(s)	603
Hsp92II	CATG	1 cut(s)	349
HspAI	GCGC	1 cut(s)	134
KpnI	GGTACC	1 cut(s)	662
KspAI	GTTAAC	1 cut(s)	12
Kzo9I	GATC	2 cut(s)	142, 535
LguI	GCTCTTC	1 cut(s)	218
LmnI	GCTCC	3 cut(s)	415, 452, 705
MaeI	CTAG	2 cut(s)	480, 773
MaeII	ACGT	1 cut(s)	603
MaeIII	GTNAC	2 cut(s)	307, 937
MalI	GATC	2 cut(s)	144, 537
MboI	GATC	2 cut(s)	142, 535
MboII	GAAGA	3 cut(s)	125, 235, 332
MhlI	GDGCHC	1 cut(s)	420
MlsI	TGGCCA	1 cut(s)	180
MluCI	AATT	4 cut(s)	147, 367, 398, 943
MluNI	TGGCCA	1 cut(s)	180
MlyI	GAGTC	2 cut(s)	479, 662
MmeI	TCCRAC	1 cut(s)	393
MnlI	CCTC	8 cut(s)	97, 193, 518, 520, 610, 756, 825, 889
Mox20I	TGGCCA	1 cut(s)	180
MroXI	GAANNNNTTC	1 cut(s)	159
MscI	TGGCCA	1 cut(s)	180
MseI	TTAA	3 cut(s)	11, 621, 955
Msp20I	TGGCCA	1 cut(s)	180
MspI	CCGG	2 cut(s)	100, 684
MspR9I	CCNGG	2 cut(s)	182, 901
MvaI	CCWGG	2 cut(s)	182, 901
MwoI	GCNNNNNNNGC	1 cut(s)	841
NdeII	GATC	2 cut(s)	142, 535
NlaIII	CATG	1 cut(s)	349
NlaIV	GGNNCC	3 cut(s)	204, 660, 836
NmuCI	GTSAC	1 cut(s)	307
NspV	TTCGAA	1 cut(s)	441
PciSI	GCTCTTC	1 cut(s)	218
PcsI	WCGNNNNNNNCGW	3 cut(s)	42, 126, 597
PdmI	GAANNNNTTC	1 cut(s)	159
PfeI	GAWTC	2 cut(s)	386, 504
PflMI	CCANNNNNTGG	1 cut(s)	248
PkrI	GCNGC	1 cut(s)	952
PleI	GAGTC	2 cut(s)	478, 661
PpsI	GAGTC	2 cut(s)	478, 661
Psp6I	CCWGG	2 cut(s)	180, 899
PspGI	CCWGG	2 cut(s)	180, 899
PspN4I	GGNNCC	3 cut(s)	204, 660, 836
PspPI	GGNCC	2 cut(s)	260, 351
PstI	CTGCAG	1 cut(s)	952
RsaI	GTAC	7 cut(s)	119, 140, 467, 541, 660, 767, 810
RsaNI	GTAC	7 cut(s)	118, 139, 466, 540, 659, 766, 809
SalI	GTCGAC	1 cut(s)	82
SapI	GCTCTTC	1 cut(s)	218
SaqAI	TTAA	3 cut(s)	11, 621, 955
SatI	GCNGC	1 cut(s)	951
Sau3AI	GATC	2 cut(s)	142, 535
Sau96I	GGNCC	2 cut(s)	260, 351
SchI	GAGTC	2 cut(s)	479, 662
ScrFI	CCNGG	2 cut(s)	182, 901
SduI	GDGCHC	1 cut(s)	420
SfcI	CTRYAG	2 cut(s)	381, 948
SfuI	TTCGAA	1 cut(s)	441
SinI	GGWCC	1 cut(s)	260
SmlI	CTYRAG	4 cut(s)	67, 509, 547, 866
SmoI	CTYRAG	4 cut(s)	67, 509, 547, 866
Sse9I	AATT	4 cut(s)	147, 367, 398, 943
SsiI	CCGC	1 cut(s)	933
SspMI	CTAG	2 cut(s)	480, 773
StyD4I	CCNGG	2 cut(s)	180, 899
TaaI	ACNGT	4 cut(s)	122, 669, 863, 887
TaiI	ACGT	1 cut(s)	606
TaqI	TCGA	6 cut(s)	36, 48, 83, 111, 441, 736
TaqII	GACCGA	1 cut(s)	277
TasI	AATT	4 cut(s)	147, 367, 398, 943
TfiI	GAWTC	2 cut(s)	386, 504
Tru1I	TTAA	3 cut(s)	11, 621, 955
Tru9I	TTAA	3 cut(s)	11, 621, 955
TscAI	CASTG	1 cut(s)	846
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	1 cut(s)	950
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	2 cut(s)	300, 378
TspGWI	ACGGA	2 cut(s)	34, 810
TspRI	CASTG	1 cut(s)	846
Van91I	CCANNNNNTGG	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	260
XapI	RAATTY	2 cut(s)	147, 943
XmiI	GTMKAC	1 cut(s)	83
XmnI	GAANNNNTTC	1 cut(s)	159
XspI	CTAG	2 cut(s)	480, 773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.