FvH4_7g15780

oxidoreductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0001604
Physical Location & Seq
Reverse (-)
13640740 .. 13642762
2023 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g15780.t1

Sequence Viewer

Length: 951 bp
ATGGGTTCCATGACACTCCCCAAAGAGCTTCCCACCATCAACTTCTCCCTTCAAGACTTGAAGCCTGGCTCAAGCTCCTGGGCTTCCACCTGCAAACAAGTCCGATATGCACTCGAAGAATACGGTTGCTTTGTGGCATTGTATGAACAAGTCTCTCCGCAGCTTATGAACAATATCTTTGGCCAATCCAAGGATTTGTTTCAGGTTCCTCTAGAAAACAAAGTCAAGAACACCAGCGAGGAGCCTTACCGGGGCTACATCGGACCAAACCCGCTCATGCCGCTCTATGAAGGCTTGGCCATTGACAACGTCACTTCCCCACAAGAAACTCAGAAGTTTAGGGACCTCATGTGGCCTAATGGAAAGACCAAGTTCTGTGAAATAACGGATCTGTTTGCCAAGTTGCTCGGAGACTTGGAAAAGACTGTGGAGAAGATGTTGTTCGAAAGCTTTGGGGTATCCCAAGATCAATACGAATCGTTGTCGAGTTCAAACAGTCATCTTCTTCGTTTTCTCAAGTACAATACGCCGGAAGAGAGAGACGCAGTCATAAGATTCCCCAGCCACACAGACAAGAACTTCACCACCATTGTTGTTCAGCATGACGTCGGTGGCCTCGAGGTTCAGACCAAAGATGGTGATTGGATTAGTGTCGAGTCTGCACCTTCTCAGTTTCTGTTCATGGCCGGTGATGGACTGCAGGTATGGAGCAATGACAGAGTGCAAGCTTGCCACCATCGAGTGAAGCACTGCGGAGACAAGACTCGATACTCGTTGGGAATGTTTACGTTTAACAATGGAGCATTCGAGGTACCCAAAGAGCTCATAGACGAAAGCCACCCTCTCGTCTACAACAAGTTTGACAGTCGTGGCTTCATAAGATTTTACACCACACCTGAGGCCAAGAAGGCAGAGTCGCCCACTAAAGCTTATTGCGGTGTTAAAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

317

Amino Acids

35.91

Weight (kDa)

5.72

Isoelectric Point (pI)

40.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 10 - 88 1.4e-12 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 172 - 263 3.3e-20 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 98
AatII GACGTC 1 cut(s) 609
AbsI CCTCGAGG 1 cut(s) 617
Acc36I ACCTGC 2 cut(s) 98, 691
Acc65I GGTACC 1 cut(s) 811
AccB1I GGYRCC 1 cut(s) 811
AccBSI CCGCTC 2 cut(s) 274, 283
AccI GTMKAC 1 cut(s) 849
AciI CCGC 5 cut(s) 158, 272, 281, 753, 936
AclWI GGATC 1 cut(s) 396
AcoI YGGCCR 3 cut(s) 181, 297, 684
AcyI GRCGYC 1 cut(s) 606
AfaI GTAC 2 cut(s) 521, 813
AfiI CCNNNNNNNGG 2 cut(s) 190, 251
AgsI TTSAA 3 cut(s) 53, 61, 492
AjnI CCWGG 2 cut(s) 64, 77
AluBI AGCT 7 cut(s) 28, 75, 163, 450, 728, 823, 929
AluI AGCT 7 cut(s) 28, 75, 163, 450, 728, 823, 929
Alw21I GWGCWC 1 cut(s) 825
Alw26I GTCTC 4 cut(s) 157, 405, 534, 750
AlwI GGATC 1 cut(s) 396
AlwNI CAGNNNCTG 1 cut(s) 676
Ama87I CYCGRG 1 cut(s) 617
AoxI GGCC 6 cut(s) 181, 297, 353, 613, 684, 900
ApeKI GCWGC 1 cut(s) 160
Asp718I GGTACC 1 cut(s) 811
AspS9I GGNCC 2 cut(s) 263, 343
AsuC2I CCSGG 1 cut(s) 251
AsuHPI GGTGA 3 cut(s) 574, 650, 701
AsuII TTCGAA 1 cut(s) 444
AvaI CYCGRG 1 cut(s) 617
AvaII GGWCC 2 cut(s) 263, 343
AxyI CCTNAGG 1 cut(s) 897
BalI TGGCCA 2 cut(s) 183, 299
BanI GGYRCC 1 cut(s) 811
BanII GRGCYC 1 cut(s) 825
Bbv12I GWGCWC 1 cut(s) 825
BbvI GCAGC 1 cut(s) 172
BccI CCATC 4 cut(s) 44, 629, 686, 744
BciT130I CCWGG 2 cut(s) 66, 79
BciVI GTATCC 1 cut(s) 469
BcnI CCSGG 1 cut(s) 251
BcoDI GTCTC 4 cut(s) 157, 405, 534, 750
BfaI CTAG 2 cut(s) 212, 949
BfmI CTRYAG 1 cut(s) 698
BfuAI ACCTGC 2 cut(s) 98, 691
BfuI GTATCC 1 cut(s) 469
BglI GCCNNNNNGGC 1 cut(s) 908
BisI GCNGC 2 cut(s) 161, 281
BlsI GCNGC 2 cut(s) 162, 282
Bme1390I CCNGG 3 cut(s) 66, 79, 251
Bme18I GGWCC 2 cut(s) 263, 343
BmeT110I CYCGRG 1 cut(s) 617
BmgT120I GGNCC 2 cut(s) 263, 343
BmiI GGNNCC 5 cut(s) 7, 207, 243, 344, 813
BmrFI CCNGG 3 cut(s) 66, 79, 251
Bpu14I TTCGAA 1 cut(s) 444
BpuEI CTTGAG 2 cut(s) 55, 500
BpuMI CCSGG 1 cut(s) 251
BsaHI GRCGYC 1 cut(s) 606
BsaJI CCNNGG 3 cut(s) 78, 189, 250
BsaXI ACNNNNNCTCC 2 cut(s) 422, 452
Bsc4I CCNNNNNNNGG 2 cut(s) 190, 251
Bse118I RCCGGY 1 cut(s) 686
Bse21I CCTNAGG 1 cut(s) 897
Bse3DI GCAATG 1 cut(s) 718
BseBI CCWGG 2 cut(s) 66, 79
BseDI CCNNGG 3 cut(s) 78, 189, 250
BseLI CCNNNNNNNGG 2 cut(s) 190, 251
BseMI GCAATG 1 cut(s) 718
BseMII CTCAG 3 cut(s) 344, 683, 888
BseRI GAGGAG 1 cut(s) 254
BseXI GCAGC 1 cut(s) 172
BseYI CCCAGC 1 cut(s) 560
BsgI GTGCAG 1 cut(s) 645
BshFI GGCC 6 cut(s) 183, 299, 355, 615, 686, 902
BshNI GGYRCC 1 cut(s) 811
BsiHKAI GWGCWC 1 cut(s) 825
BsiHKCI CYCGRG 1 cut(s) 617
BsiSI CCGG 3 cut(s) 250, 530, 687
BslFI GGGAC 1 cut(s) 356
BslI CCNNNNNNNGG 2 cut(s) 190, 251
BsmAI GTCTC 4 cut(s) 157, 405, 534, 750
BsmBI CGTCTC 1 cut(s) 534
BsmFI GGGAC 1 cut(s) 356
BsmI GAATGC 1 cut(s) 803
BsnI GGCC 6 cut(s) 183, 299, 355, 615, 686, 902
BsoBI CYCGRG 1 cut(s) 617
Bsp119I TTCGAA 1 cut(s) 444
Bsp1286I GDGCHC 1 cut(s) 825
Bsp143I GATC 2 cut(s) 388, 466
BspACI CCGC 5 cut(s) 158, 272, 281, 753, 936
BspANI GGCC 6 cut(s) 183, 299, 355, 615, 686, 902
BspCNI CTCAG 3 cut(s) 343, 682, 889
BspLI GGNNCC 5 cut(s) 7, 207, 243, 344, 813
BspMAI CTGCAG 1 cut(s) 702
BspMI ACCTGC 2 cut(s) 98, 691
BspPI GGATC 1 cut(s) 396
BspT104I TTCGAA 1 cut(s) 444
BspT107I GGYRCC 1 cut(s) 811
BsrBI CCGCTC 2 cut(s) 274, 283
BsrDI GCAATG 1 cut(s) 718
BsrFI RCCGGY 1 cut(s) 686
BssAI RCCGGY 1 cut(s) 686
BssECI CCNNGG 3 cut(s) 78, 189, 250
BssMI GATC 2 cut(s) 388, 466
BssNI GRCGYC 1 cut(s) 606
BssT1I CCWWGG 1 cut(s) 189
Bst2UI CCWGG 2 cut(s) 66, 79
Bst4CI ACNGT 4 cut(s) 125, 427, 497, 866
Bst6I CTCTTC 1 cut(s) 528
BstACI GRCGYC 1 cut(s) 606
BstBI TTCGAA 1 cut(s) 444
BstC8I GCNNGC 2 cut(s) 726, 730
BstDEI CTNAG 3 cut(s) 330, 669, 897
BstKTI GATC 2 cut(s) 391, 469
BstMAI GTCTC 4 cut(s) 157, 405, 534, 750
BstMBI GATC 2 cut(s) 388, 466
BstMWI GCNNNNNNNGC 2 cut(s) 280, 908
BstNI CCWGG 2 cut(s) 66, 79
BstSCI CCNGG 3 cut(s) 64, 77, 249
BstSFI CTRYAG 1 cut(s) 698
BstV1I GCAGC 1 cut(s) 172
BstX2I RGATCY 1 cut(s) 388
BstYI RGATCY 1 cut(s) 388
Bsu36I CCTNAGG 1 cut(s) 897
BsuI GTATCC 1 cut(s) 469
BsuRI GGCC 6 cut(s) 183, 299, 355, 615, 686, 902
BtsI GCAGTG 1 cut(s) 748
BtsIMutI CAGTG 1 cut(s) 748
BveI ACCTGC 2 cut(s) 98, 691
Cac8I GCNNGC 2 cut(s) 726, 730
CaiI CAGNNNCTG 1 cut(s) 676
Cfr10I RCCGGY 1 cut(s) 686
Cfr13I GGNCC 2 cut(s) 263, 343
CseI GACGC 1 cut(s) 551
Csp6I GTAC 2 cut(s) 520, 812
CspCI CAANNNNNGTGG 2 cut(s) 574, 609
CviAII CATG 5 cut(s) 10, 277, 349, 602, 682
CviQI GTAC 2 cut(s) 520, 812
DdeI CTNAG 3 cut(s) 330, 669, 897
DpnI GATC 2 cut(s) 390, 468
DpnII GATC 2 cut(s) 388, 466
EaeI YGGCCR 3 cut(s) 181, 297, 684
Eam1104I CTCTTC 1 cut(s) 528
EarI CTCTTC 1 cut(s) 528
Ecl136II GAGCTC 1 cut(s) 823
Eco130I CCWWGG 1 cut(s) 189
Eco24I GRGCYC 1 cut(s) 825
Eco47I GGWCC 2 cut(s) 263, 343
Eco53kI GAGCTC 1 cut(s) 823
Eco81I CCTNAGG 1 cut(s) 897
Eco88I CYCGRG 1 cut(s) 617
EcoICRI GAGCTC 1 cut(s) 823
EcoO109I RGGNCCY 1 cut(s) 343
EcoRII CCWGG 2 cut(s) 64, 77
EcoT14I CCWWGG 1 cut(s) 189
EcoT38I GRGCYC 1 cut(s) 825
ErhI CCWWGG 1 cut(s) 189
Esp3I CGTCTC 1 cut(s) 534
FaeI CATG 5 cut(s) 13, 280, 352, 605, 685
FaqI GGGAC 1 cut(s) 356
FatI CATG 5 cut(s) 9, 276, 348, 601, 681
FauI CCCGC 1 cut(s) 279
FblI GTMKAC 1 cut(s) 849
Fnu4HI GCNGC 2 cut(s) 161, 281
FriOI GRGCYC 1 cut(s) 825
Fsp4HI GCNGC 2 cut(s) 161, 281
FspBI CTAG 2 cut(s) 212, 949
GluI GCNGC 2 cut(s) 161, 281
GsaI CCCAGC 1 cut(s) 564
HaeIII GGCC 6 cut(s) 183, 299, 355, 615, 686, 902
HapII CCGG 3 cut(s) 250, 530, 687
HgaI GACGC 1 cut(s) 551
Hin1I GRCGYC 1 cut(s) 606
Hin1II CATG 5 cut(s) 13, 280, 352, 605, 685
HindIII AAGCTT 3 cut(s) 448, 726, 927
HinfI GANTC 5 cut(s) 476, 555, 656, 763, 914
HpaII CCGG 3 cut(s) 250, 530, 687
HphI GGTGA 3 cut(s) 574, 650, 701
Hpy166II GTNNAC 2 cut(s) 786, 850
Hpy188I TCNGA 5 cut(s) 104, 263, 333, 410, 627
Hpy188III TCNNGA 3 cut(s) 53, 212, 226
Hpy8I GTNNAC 2 cut(s) 786, 850
Hpy99I CGWCG 1 cut(s) 611
HpyAV CCTTC 4 cut(s) 59, 284, 675, 901
HpyCH4III ACNGT 4 cut(s) 125, 427, 497, 866
HpyCH4IV ACGT 3 cut(s) 309, 606, 788
HpyCH4V TGCA 5 cut(s) 93, 110, 662, 700, 724
HpyF10VI GCNNNNNNNGC 2 cut(s) 280, 908
HpyF3I CTNAG 3 cut(s) 330, 669, 897
HpySE526I ACGT 3 cut(s) 309, 606, 788
Hsp92I GRCGYC 1 cut(s) 606
Hsp92II CATG 5 cut(s) 13, 280, 352, 605, 685
KpnI GGTACC 1 cut(s) 815
Kzo9I GATC 2 cut(s) 388, 466
LmnI GCTCC 4 cut(s) 80, 241, 708, 800
Lsp1109I GCAGC 1 cut(s) 172
MaeI CTAG 2 cut(s) 212, 949
MaeII ACGT 3 cut(s) 309, 606, 788
MaeIII GTNAC 1 cut(s) 310
MalI GATC 2 cut(s) 390, 468
MbiI CCGCTC 2 cut(s) 274, 283
MboI GATC 2 cut(s) 388, 466
MboII GAAGA 5 cut(s) 128, 445, 494, 497, 545
MflI RGATCY 1 cut(s) 388
MhlI GDGCHC 1 cut(s) 825
MlsI TGGCCA 2 cut(s) 183, 299
MluNI TGGCCA 2 cut(s) 183, 299
MlyI GAGTC 3 cut(s) 665, 757, 923
MnlI CCTC 8 cut(s) 219, 232, 356, 613, 626, 802, 852, 892
Mox20I TGGCCA 2 cut(s) 183, 299
MscI TGGCCA 2 cut(s) 183, 299
MseI TTAA 2 cut(s) 792, 942
Msp20I TGGCCA 2 cut(s) 183, 299
MspI CCGG 3 cut(s) 250, 530, 687
MspR9I CCNGG 3 cut(s) 66, 79, 251
Mva1269I GAATGC 1 cut(s) 803
MvaI CCWGG 2 cut(s) 66, 79
MwoI GCNNNNNNNGC 2 cut(s) 280, 908
NciI CCSGG 1 cut(s) 251
NdeII GATC 2 cut(s) 388, 466
NlaIII CATG 5 cut(s) 13, 280, 352, 605, 685
NlaIV GGNNCC 5 cut(s) 7, 207, 243, 344, 813
NmuCI GTSAC 1 cut(s) 310
NspV TTCGAA 1 cut(s) 444
PaeR7I CTCGAG 1 cut(s) 617
PaqCI CACCTGC 1 cut(s) 98
PcsI WCGNNNNNNNCGW 1 cut(s) 615
PctI GAATGC 1 cut(s) 803
PfeI GAWTC 2 cut(s) 476, 555
PflFI GACNNNGTC 2 cut(s) 308, 545
PkrI GCNGC 2 cut(s) 162, 282
PleI GAGTC 3 cut(s) 664, 757, 922
PpsI GAGTC 3 cut(s) 664, 757, 922
PpuMI RGGWCCY 1 cut(s) 343
Psp124BI GAGCTC 1 cut(s) 825
Psp5II RGGWCCY 1 cut(s) 343
Psp6I CCWGG 2 cut(s) 64, 77
PspFI CCCAGC 1 cut(s) 560
PspGI CCWGG 2 cut(s) 64, 77
PspN4I GGNNCC 5 cut(s) 7, 207, 243, 344, 813
PspPI GGNCC 2 cut(s) 263, 343
PspPPI RGGWCCY 1 cut(s) 343
PspXI VCTCGAGB 1 cut(s) 617
PstI CTGCAG 1 cut(s) 702
PstNI CAGNNNCTG 1 cut(s) 676
PsuI RGATCY 1 cut(s) 388
PsyI GACNNNGTC 2 cut(s) 308, 545
RsaI GTAC 2 cut(s) 521, 813
RsaNI GTAC 2 cut(s) 520, 812
SacI GAGCTC 1 cut(s) 825
SaqAI TTAA 2 cut(s) 792, 942
SatI GCNGC 2 cut(s) 161, 281
Sau3AI GATC 2 cut(s) 388, 466
Sau96I GGNCC 2 cut(s) 263, 343
SchI GAGTC 3 cut(s) 665, 757, 923
ScrFI CCNGG 3 cut(s) 66, 79, 251
SduI GDGCHC 1 cut(s) 825
SfcI CTRYAG 1 cut(s) 698
Sfr274I CTCGAG 1 cut(s) 617
SfuI TTCGAA 1 cut(s) 444
SinI GGWCC 2 cut(s) 263, 343
SlaI CTCGAG 1 cut(s) 617
SmlI CTYRAG 3 cut(s) 70, 515, 617
SmoI CTYRAG 3 cut(s) 70, 515, 617
SsiI CCGC 5 cut(s) 158, 272, 281, 753, 936
SspMI CTAG 2 cut(s) 212, 949
SstI GAGCTC 1 cut(s) 825
StyD4I CCNGG 3 cut(s) 64, 77, 249
StyI CCWWGG 1 cut(s) 189
TaaI ACNGT 4 cut(s) 125, 427, 497, 866
TaiI ACGT 3 cut(s) 312, 609, 791
TaqI TCGA 8 cut(s) 114, 444, 485, 618, 654, 739, 766, 807
TatI WGTACW 1 cut(s) 519
TauI GCSGC 1 cut(s) 283
TfiI GAWTC 2 cut(s) 476, 555
Tru1I TTAA 2 cut(s) 792, 942
Tru9I TTAA 2 cut(s) 792, 942
TscAI CASTG 1 cut(s) 755
TseFI GTSAC 1 cut(s) 310
TseI GCWGC 1 cut(s) 160
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 5 cut(s) 159, 182, 303, 670, 865
TspGWI ACGGA 1 cut(s) 401
TspRI CASTG 1 cut(s) 755
Tth111I GACNNNGTC 2 cut(s) 308, 545
VpaK11BI GGWCC 2 cut(s) 263, 343
XbaI TCTAGA 1 cut(s) 211
XhoI CTCGAG 1 cut(s) 617
XmiI GTMKAC 1 cut(s) 849
XspI CTAG 2 cut(s) 212, 949
ZraI GACGTC 1 cut(s) 607
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.