Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001604

Physical Location & Seq

Genomic Coordinates Forward (+)

19179766 .. 19182254

Gene Structure 2489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G262900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGGTTCCCAAACAAAGCCTACGCTTCCTACCATCAACTTCTCCATTGAAGACTTGAAGCCTGGCTCAGCTTCTTGGCTGTCCACCGCCAAACAAGTCCGTTTTGGCCTCGAAGAATACGGCTGTTTCGTGGCACAGTATGAGCAAATTTCTGGGGAACTTTTAAACAGCATCTTCGGGCAGGCCAAAGATTTGTTTGAGGTTCCCAAAGAAAACAAAGTAAAGAACGTTGGTGAGGAACCTTATCGTGGGCATATGGGTCCAAACCCCCTTCTGCCACTCTATGAAAGCTTGTGTATTGATAATGTGACATCCCCACAGGAAACTCAAAAGTTCAAAAATCTCATGTGGCCTGAAGGAAAGACCAACTTCTGCGAAACCACAGATTCATTTGGGCAGTTATTGGCAGATTTGGAACGCACAGTTGAACAATTGATATTCGAAAGCTATGGGATTGGAAAGCAGTACGAGTCAGTTGGTAGTTCCAACGGTCACCTTCTTAGATTCATCAAATATACAGTACCAGAGGACAACGATACCACCTTAAGGTTTCCGAGCCACACAGACATAAACTTCACCACCATTGTTGTTCAGCATGATATCCCTGGCTTGGAGGTAAAAACCAAGGAAGGCGATTGGATTGATGTTGAGTGCGCACCCTCTCAATTCGTATTCATGGCAGGTGATGGATTGCAGGTGTGGAGCAATGACAGAGTGAAAGCTTGCCATCACCGAGTGAAGCATTGCGGAAACAAAACAAGATACTCAATTGGACTGTTTACTTTCAACAACGGGATTTTCCAAGTGCCGCAAGAATTAGTGGACGAAAGCCACCCACTCCTCTACAACCCATTTGATAGCCGTGCCTTTATTCGAAAATATGCTACTACTCCTGAGCTGAAGAAGGAACCCTCTCCTATCAAGGCCTTCGCCGGTGTCAAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

316

Amino Acids

35.53

Weight (kDa)

5.56

Isoelectric Point (pI)

33.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001604)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28210 FvH4_6g42700 FvH4_7g15780
malus_domestica	MD03G1085000.v1.1 MD05G1208700.v1.1 MD10G1195200.v1.1 MD11G1092600.v1.1
prunus_persica	Prupe.4G262900_v2.0.a1 Prupe.4G263000_v2.0.a1 Prupe.4G263100_v2.0.a1 Prupe.4G264400_v2.0.a1
pyrus_communis	pycom03g06720 pycom05g19460 pycom10g16890 pycom11g07800 pycom11g07820
rosa_chinensis	RchiOBHm_Chr1g0358581 RchiOBHm_Chr4g0395841 RchiOBHm_Chr4g0444921 RchiOBHm_Chr5g0050321 RchiOBHm_Chr5g0050341
rosa_laevigata	RLG00000027944 RLG00000034696 RLG00000034697 RLG00000034698
rosa_multiflora	Rmu_sc0001103.1_g000025 Rmu_sc0001609.1_g000014 Rmu_sc0005060.1_g000004 Rmu_sc0005060.1_g000006
rosa_roxburghii	Rroxscaffold_1G00027250 Rroxscaffold_1G00030670 Rroxscaffold_1G00030700 Rroxscaffold_4G00297680 Rroxscaffold_4G00297780
rosa_rugosa	Rorug01G0262600 Rorug01G0262700 Rorug05G0260000 Rorug05G0260000 Rorug05G0260100
rosa_samantha	Rh1BG243900 Rh1CG260900 Rh4BG429600 Rh4DG425500 Rh5AG331700 Rh5AG331800 Rh5CG369400 Rh5CG369500
rosa_wichuraiana	Rw1G024650 Rw5G031370 Rw5G031380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	671, 685
Acc16I	TGCGCA	1 cut(s)	655
Acc36I	ACCTGC	2 cut(s)	671, 685
AciI	CCGC	3 cut(s)	87, 747, 809
AclI	AACGTT	1 cut(s)	228
AcsI	RAATTY	1 cut(s)	147
AcuI	CTGAAG	2 cut(s)	375, 920
AdeI	CACNNNGTG	1 cut(s)	736
AfaI	GTAC	2 cut(s)	467, 522
AfiI	CCNNNNNNNGG	3 cut(s)	248, 546, 610
AflII	CTTAAG	1 cut(s)	544
AgsI	TTSAA	5 cut(s)	50, 58, 337, 428, 787
AjnI	CCWGG	2 cut(s)	61, 604
AluBI	AGCT	6 cut(s)	71, 291, 447, 722, 898, 944
AluI	AGCT	6 cut(s)	71, 291, 447, 722, 898, 944
AoxI	GGCC	4 cut(s)	106, 183, 350, 924
ApoI	RAATTY	1 cut(s)	147
AspLEI	GCGC	1 cut(s)	656
AspS9I	GGNCC	1 cut(s)	260
AsuHPI	GGTGA	5 cut(s)	245, 485, 568, 695, 722
AsuII	TTCGAA	2 cut(s)	441, 874
AvaII	GGWCC	1 cut(s)	260
BbsI	GAAGAC	1 cut(s)	57
BccI	CCATC	3 cut(s)	41, 680, 735
BceAI	ACGGC	2 cut(s)	136, 846
BciT130I	CCWGG	2 cut(s)	63, 606
BfrI	CTTAAG	1 cut(s)	544
BfuAI	ACCTGC	2 cut(s)	671, 685
BisI	GCNGC	1 cut(s)	809
BlpI	GCTNAGC	1 cut(s)	67
BlsI	GCNGC	1 cut(s)	810
Bme1390I	CCNGG	2 cut(s)	63, 606
Bme18I	GGWCC	1 cut(s)	260
BmgT120I	GGNCC	1 cut(s)	260
BmiI	GGNNCC	5 cut(s)	7, 204, 240, 261, 909
BmrFI	CCNGG	2 cut(s)	63, 606
BmsI	GCATC	1 cut(s)	180
BpiI	GAAGAC	1 cut(s)	57
Bpu10I	CCTNAGC	1 cut(s)	894
Bpu1102I	GCTNAGC	1 cut(s)	67
Bpu14I	TTCGAA	2 cut(s)	441, 874
BsaJI	CCNNGG	2 cut(s)	604, 624
Bsc4I	CCNNNNNNNGG	3 cut(s)	248, 546, 610
Bse118I	RCCGGY	1 cut(s)	932
Bse3DI	GCAATG	2 cut(s)	712, 742
BseBI	CCWGG	2 cut(s)	63, 606
BseDI	CCNNGG	2 cut(s)	604, 624
BseGI	GGATG	1 cut(s)	311
BseLI	CCNNNNNNNGG	3 cut(s)	248, 546, 610
BseMI	GCAATG	2 cut(s)	712, 742
BseMII	CTCAG	2 cut(s)	81, 885
BseRI	GAGGAG	1 cut(s)	830
BshFI	GGCC	4 cut(s)	108, 185, 352, 926
BsiSI	CCGG	1 cut(s)	933
BslI	CCNNNNNNNGG	3 cut(s)	248, 546, 610
BsnI	GGCC	4 cut(s)	108, 185, 352, 926
Bsp119I	TTCGAA	2 cut(s)	441, 874
Bsp1720I	GCTNAGC	1 cut(s)	67
BspACI	CCGC	3 cut(s)	87, 747, 809
BspANI	GGCC	4 cut(s)	108, 185, 352, 926
BspCNI	CTCAG	2 cut(s)	80, 886
BspLI	GGNNCC	5 cut(s)	7, 204, 240, 261, 909
BspMI	ACCTGC	2 cut(s)	671, 685
BspT104I	TTCGAA	2 cut(s)	441, 874
BspTI	CTTAAG	1 cut(s)	544
BsrDI	GCAATG	2 cut(s)	712, 742
BsrFI	RCCGGY	1 cut(s)	932
BssAI	RCCGGY	1 cut(s)	932
BssECI	CCNNGG	2 cut(s)	604, 624
BssT1I	CCWWGG	1 cut(s)	624
Bst2UI	CCWGG	2 cut(s)	63, 606
Bst4CI	ACNGT	5 cut(s)	138, 424, 491, 520, 777
BstAFI	CTTAAG	1 cut(s)	544
BstBI	TTCGAA	2 cut(s)	441, 874
BstC8I	GCNNGC	2 cut(s)	183, 724
BstDEI	CTNAG	3 cut(s)	67, 500, 894
BstEII	GGTNACC	1 cut(s)	491
BstF5I	GGATG	1 cut(s)	311
BstHHI	GCGC	1 cut(s)	656
BstNI	CCWGG	2 cut(s)	63, 606
BstPI	GGTNACC	1 cut(s)	491
BstSCI	CCNGG	2 cut(s)	61, 604
BstV2I	GAAGAC	1 cut(s)	57
BsuRI	GGCC	4 cut(s)	108, 185, 352, 926
BtsCI	GGATG	1 cut(s)	311
BveI	ACCTGC	2 cut(s)	671, 685
Cac8I	GCNNGC	2 cut(s)	183, 724
CfoI	GCGC	1 cut(s)	656
Cfr10I	RCCGGY	1 cut(s)	932
Cfr13I	GGNCC	1 cut(s)	260
Csp6I	GTAC	2 cut(s)	466, 521
CspCI	CAANNNNNGTGG	2 cut(s)	568, 603
CviAII	CATG	3 cut(s)	346, 596, 676
CviQI	GTAC	2 cut(s)	466, 521
DdeI	CTNAG	3 cut(s)	67, 500, 894
DraI	TTTAAA	1 cut(s)	165
DraIII	CACNNNGTG	1 cut(s)	736
Eco130I	CCWWGG	1 cut(s)	624
Eco147I	AGGCCT	1 cut(s)	926
Eco32I	GATATC	1 cut(s)	601
Eco47I	GGWCC	1 cut(s)	260
Eco57I	CTGAAG	2 cut(s)	375, 920
Eco91I	GGTNACC	1 cut(s)	491
EcoO65I	GGTNACC	1 cut(s)	491
EcoRII	CCWGG	2 cut(s)	61, 604
EcoRV	GATATC	1 cut(s)	601
EcoT14I	CCWWGG	1 cut(s)	624
ErhI	CCWWGG	1 cut(s)	624
FaeI	CATG	3 cut(s)	349, 599, 679
FalI	AAGNNNNNCTT	2 cut(s)	353, 385
FatI	CATG	3 cut(s)	345, 595, 675
FauNDI	CATATG	1 cut(s)	255
Fnu4HI	GCNGC	1 cut(s)	809
FokI	GGATG	1 cut(s)	298
Fsp4HI	GCNGC	1 cut(s)	809
FspAI	RTGCGCAY	1 cut(s)	655
FspI	TGCGCA	1 cut(s)	655
GlaI	GCGC	1 cut(s)	655
GluI	GCNGC	1 cut(s)	809
HaeIII	GGCC	4 cut(s)	108, 185, 352, 926
HapII	CCGG	1 cut(s)	933
HhaI	GCGC	1 cut(s)	656
Hin1II	CATG	3 cut(s)	349, 599, 679
Hin6I	GCGC	1 cut(s)	654
HinP1I	GCGC	1 cut(s)	654
HindIII	AAGCTT	3 cut(s)	289, 720, 942
HinfI	GANTC	3 cut(s)	386, 470, 504
HpaII	CCGG	1 cut(s)	933
HphI	GGTGA	5 cut(s)	245, 485, 568, 695, 722
Hpy166II	GTNNAC	3 cut(s)	84, 780, 823
Hpy188I	TCNGA	1 cut(s)	555
Hpy188III	TCNNGA	1 cut(s)	893
Hpy8I	GTNNAC	3 cut(s)	84, 780, 823
HpyAV	CCTTC	6 cut(s)	281, 350, 506, 623, 898, 937
HpyCH4III	ACNGT	5 cut(s)	138, 424, 491, 520, 777
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	1 cut(s)	694
HpyF3I	CTNAG	3 cut(s)	67, 500, 894
HpySE526I	ACGT	1 cut(s)	228
Hsp92II	CATG	3 cut(s)	349, 599, 679
HspAI	GCGC	1 cut(s)	654
LmnI	GCTCC	1 cut(s)	702
LweI	GCATC	1 cut(s)	180
MaeII	ACGT	1 cut(s)	228
MaeIII	GTNAC	2 cut(s)	307, 491
MboII	GAAGA	4 cut(s)	62, 125, 166, 913
MfeI	CAATTG	2 cut(s)	431, 768
MluCI	AATT	5 cut(s)	147, 431, 665, 768, 815
MlyI	GAGTC	1 cut(s)	479
MmeI	TCCRAC	1 cut(s)	510
MnlI	CCTC	8 cut(s)	119, 193, 229, 520, 607, 670, 851, 922
MseI	TTAA	3 cut(s)	164, 545, 946
MspCI	CTTAAG	1 cut(s)	544
MspI	CCGG	1 cut(s)	933
MspR9I	CCNGG	2 cut(s)	63, 606
MunI	CAATTG	2 cut(s)	431, 768
MvaI	CCWGG	2 cut(s)	63, 606
NdeI	CATATG	1 cut(s)	255
NlaIII	CATG	3 cut(s)	349, 599, 679
NlaIV	GGNNCC	5 cut(s)	7, 204, 240, 261, 909
NmuCI	GTSAC	2 cut(s)	307, 491
NsbI	TGCGCA	1 cut(s)	655
NspV	TTCGAA	2 cut(s)	441, 874
PaqCI	CACCTGC	2 cut(s)	671, 685
PceI	AGGCCT	1 cut(s)	926
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PfeI	GAWTC	2 cut(s)	386, 504
PkrI	GCNGC	1 cut(s)	810
PleI	GAGTC	1 cut(s)	478
PpsI	GAGTC	1 cut(s)	478
Psp1406I	AACGTT	1 cut(s)	228
Psp6I	CCWGG	2 cut(s)	61, 604
PspEI	GGTNACC	1 cut(s)	491
PspGI	CCWGG	2 cut(s)	61, 604
PspN4I	GGNNCC	5 cut(s)	7, 204, 240, 261, 909
PspPI	GGNCC	1 cut(s)	260
RsaI	GTAC	2 cut(s)	467, 522
RsaNI	GTAC	2 cut(s)	466, 521
SaqAI	TTAA	3 cut(s)	164, 545, 946
SatI	GCNGC	1 cut(s)	809
Sau96I	GGNCC	1 cut(s)	260
SchI	GAGTC	1 cut(s)	479
ScrFI	CCNGG	2 cut(s)	63, 606
SfaNI	GCATC	1 cut(s)	180
SfuI	TTCGAA	2 cut(s)	441, 874
SgrAI	CRCCGGYG	1 cut(s)	932
SinI	GGWCC	1 cut(s)	260
SmlI	CTYRAG	1 cut(s)	544
SmoI	CTYRAG	1 cut(s)	544
Sse9I	AATT	5 cut(s)	147, 431, 665, 768, 815
SseBI	AGGCCT	1 cut(s)	926
SsiI	CCGC	3 cut(s)	87, 747, 809
StuI	AGGCCT	1 cut(s)	926
StyD4I	CCNGG	2 cut(s)	61, 604
StyI	CCWWGG	1 cut(s)	624
TaaI	ACNGT	5 cut(s)	138, 424, 491, 520, 777
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	3 cut(s)	111, 441, 874
TasI	AATT	5 cut(s)	147, 431, 665, 768, 815
TauI	GCSGC	1 cut(s)	811
TfiI	GAWTC	2 cut(s)	386, 504
Tru1I	TTAA	3 cut(s)	164, 545, 946
Tru9I	TTAA	3 cut(s)	164, 545, 946
TseFI	GTSAC	2 cut(s)	307, 491
Tsp45I	GTSAC	2 cut(s)	307, 491
TspDTI	ATGAA	4 cut(s)	300, 378, 496, 664
TspGWI	ACGGA	1 cut(s)	89
Vha464I	CTTAAG	1 cut(s)	544
VpaK11BI	GGWCC	1 cut(s)	260
XapI	RAATTY	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.