Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0001604

Physical Location & Seq

Genomic Coordinates Reverse (-)

6848042 .. 6851210

Gene Structure 3169 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1085000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGGCTCGTTAACACTTCCAAAGCTTCCTACCATCGACTTCTCCGTCGATGTCTTGAAGCCTGGCTCAAGTTCTTGGCTGTCCACCTCCAAACAAGTCCGGTACGCACTCGAAGAGTACGGTGGTTTCGTGGCGCAGTACGATCAAATTTCTGCACAACTTCTGAACGATATCTTTGGCCATGCCAAAGATTTGTTTGAGGTTCCTTTGGAAAACAAAGTGAAGAACGTTAGTAACGAACCATATCGTGGGTATATTGGACCGAACCACCTCATGCCACTCTATGAAGGTATCGCCATTGATAATGTCACATCTCCAGAAGAAACTCAGAAGTTCAAAAATCTCATGTGGCCCGATGGAAAGAGCAATTTCTGTGAAACTACAGATTCATTTGCCCAATTACTATCAGAGTTGGAGCACAAAGTGGAACAAATGCTATTCGAAAGCTATGGAGCAGAAAAGCAGTACGAGTCTGTTGCTAGTGCCAACAGCCACCTTCTTAGATTCCTCAAGTATAATAAACCAGAGGAAGCTGATAGTACAACCTTGAGATTTGCGAGCCATACAGACAAGAACTTCACCACCATCGTCGTTCAGCATGACGTTGGTGGTTTGGAGGTTAAAACCAAGGATGGTGACTGGATTAGCGTTGAGTCGGTACCTTCACAGTTCGTGTTCTTGGCCGGTGATGGATTGCAGGTATGGAGCAACGACAGAATAAAAGCTTGTCATCATCGAGTGAAGCATTGTGGAGACAAGACGAGGTACTCACTGGGGTTGTTTACTTTCAACAACGGAATAATACAAGTACCACAAGAACTGGTGGACGAGAGGCACCCACTGCTCTATAACCCACTTGACAGTCTTGAGTATATAAGGTTTCACAGTAGGGGTGAGGCCAGGAACTTAGTCTCTCCTGTCAATACCTTTTGCGGTGTTACAAATTCTGCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

319

Amino Acids

35.83

Weight (kDa)

5.47

Isoelectric Point (pI)

29.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	9 - 88	2.2e-11	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	169 - 262	8.2e-22	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001604)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28210 FvH4_6g42700 FvH4_7g15780
malus_domestica	MD03G1085000.v1.1 MD05G1208700.v1.1 MD10G1195200.v1.1 MD11G1092600.v1.1
prunus_persica	Prupe.4G262900_v2.0.a1 Prupe.4G263000_v2.0.a1 Prupe.4G263100_v2.0.a1 Prupe.4G264400_v2.0.a1
pyrus_communis	pycom03g06720 pycom05g19460 pycom10g16890 pycom11g07800 pycom11g07820
rosa_chinensis	RchiOBHm_Chr1g0358581 RchiOBHm_Chr4g0395841 RchiOBHm_Chr4g0444921 RchiOBHm_Chr5g0050321 RchiOBHm_Chr5g0050341
rosa_laevigata	RLG00000027944 RLG00000034696 RLG00000034697 RLG00000034698
rosa_multiflora	Rmu_sc0001103.1_g000025 Rmu_sc0001609.1_g000014 Rmu_sc0005060.1_g000004 Rmu_sc0005060.1_g000006
rosa_roxburghii	Rroxscaffold_1G00027250 Rroxscaffold_1G00030670 Rroxscaffold_1G00030700 Rroxscaffold_4G00297680 Rroxscaffold_4G00297780
rosa_rugosa	Rorug01G0262600 Rorug01G0262700 Rorug05G0260000 Rorug05G0260000 Rorug05G0260100
rosa_samantha	Rh1BG243900 Rh1CG260900 Rh4BG429600 Rh4DG425500 Rh5AG331700 Rh5AG331800 Rh5CG369400 Rh5CG369500
rosa_wichuraiana	Rw1G024650 Rw5G031370 Rw5G031380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	44
Acc36I	ACCTGC	1 cut(s)	688
Acc65I	GGTACC	1 cut(s)	658
AccB1I	GGYRCC	2 cut(s)	658, 834
AccB7I	CCANNNNNTGG	1 cut(s)	248
AciI	CCGC	1 cut(s)	933
AclI	AACGTT	1 cut(s)	228
AcoI	YGGCCR	2 cut(s)	178, 681
AcsI	RAATTY	2 cut(s)	147, 943
AdeI	CACNNNGTG	1 cut(s)	424
AfaI	GTAC	8 cut(s)	104, 119, 140, 467, 541, 660, 767, 810
AfiI	CCNNNNNNNGG	1 cut(s)	248
AgsI	TTSAA	3 cut(s)	58, 337, 790
AjnI	CCWGG	2 cut(s)	61, 899
AluBI	AGCT	5 cut(s)	25, 447, 533, 725, 953
AluI	AGCT	5 cut(s)	25, 447, 533, 725, 953
Alw21I	GWGCWC	1 cut(s)	420
Alw26I	GTCTC	2 cut(s)	747, 916
AoxI	GGCC	4 cut(s)	178, 350, 681, 897
ApeKI	GCWGC	1 cut(s)	950
ApoI	RAATTY	2 cut(s)	147, 943
Asp718I	GGTACC	1 cut(s)	658
AspLEI	GCGC	1 cut(s)	136
AspS9I	GGNCC	2 cut(s)	260, 351
AsuHPI	GGTGA	4 cut(s)	571, 647, 698, 905
AsuII	TTCGAA	1 cut(s)	441
AvaII	GGWCC	1 cut(s)	260
BalI	TGGCCA	1 cut(s)	180
BanI	GGYRCC	2 cut(s)	658, 834
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	420
BccI	CCATC	5 cut(s)	41, 350, 593, 626, 683
BcgI	CGANNNNNNTGC	2 cut(s)	458, 492
BciT130I	CCWGG	2 cut(s)	63, 901
BcoDI	GTCTC	2 cut(s)	747, 916
BfaI	CTAG	1 cut(s)	480
BfmI	CTRYAG	2 cut(s)	381, 948
BfuAI	ACCTGC	1 cut(s)	688
BisI	GCNGC	1 cut(s)	951
BlsI	GCNGC	1 cut(s)	952
Bme1390I	CCNGG	2 cut(s)	63, 901
Bme18I	GGWCC	1 cut(s)	260
BmgT120I	GGNCC	2 cut(s)	260, 351
BmiI	GGNNCC	3 cut(s)	204, 660, 836
BmrFI	CCNGG	2 cut(s)	63, 901
BmrI	ACTGGG	1 cut(s)	782
BmuI	ACTGGG	1 cut(s)	782
BpmI	CTGGAG	1 cut(s)	300
Bpu14I	TTCGAA	1 cut(s)	441
BpuEI	CTTGAG	4 cut(s)	52, 494, 568, 887
BsaJI	CCNNGG	1 cut(s)	627
BsaWI	WCCGGW	1 cut(s)	99
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse118I	RCCGGY	1 cut(s)	683
Bse1I	ACTGG	3 cut(s)	644, 777, 825
BseBI	CCWGG	2 cut(s)	63, 901
BseDI	CCNNGG	1 cut(s)	627
BseGI	GGATG	1 cut(s)	637
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseMII	CTCAG	1 cut(s)	341
BseNI	ACTGG	3 cut(s)	644, 777, 825
BsgI	GTGCAG	1 cut(s)	138
BshFI	GGCC	4 cut(s)	180, 352, 683, 899
BshNI	GGYRCC	2 cut(s)	658, 834
BsiHKAI	GWGCWC	1 cut(s)	420
BsiSI	CCGG	2 cut(s)	100, 684
BslI	CCNNNNNNNGG	1 cut(s)	248
BsmAI	GTCTC	2 cut(s)	747, 916
BsnI	GGCC	4 cut(s)	180, 352, 683, 899
Bsp119I	TTCGAA	1 cut(s)	441
Bsp1286I	GDGCHC	2 cut(s)	8, 420
Bsp143I	GATC	1 cut(s)	142
BspACI	CCGC	1 cut(s)	933
BspANI	GGCC	4 cut(s)	180, 352, 683, 899
BspCNI	CTCAG	1 cut(s)	340
BspLI	GGNNCC	3 cut(s)	204, 660, 836
BspMAI	CTGCAG	1 cut(s)	952
BspMI	ACCTGC	1 cut(s)	688
BspT104I	TTCGAA	1 cut(s)	441
BspT107I	GGYRCC	2 cut(s)	658, 834
BsrFI	RCCGGY	1 cut(s)	683
BsrI	ACTGG	3 cut(s)	644, 777, 825
BssAI	RCCGGY	1 cut(s)	683
BssECI	CCNNGG	1 cut(s)	627
BssMI	GATC	1 cut(s)	142
BssT1I	CCWWGG	1 cut(s)	627
Bst2UI	CCWGG	2 cut(s)	63, 901
Bst4CI	ACNGT	4 cut(s)	122, 669, 863, 887
Bst6I	CTCTTC	1 cut(s)	108
BstAPI	GCANNNNNTGC	1 cut(s)	841
BstBI	TTCGAA	1 cut(s)	441
BstC8I	GCNNGC	1 cut(s)	559
BstDEI	CTNAG	3 cut(s)	327, 500, 907
BstF5I	GGATG	1 cut(s)	637
BstHHI	GCGC	1 cut(s)	136
BstKTI	GATC	1 cut(s)	145
BstMAI	GTCTC	2 cut(s)	747, 916
BstMBI	GATC	1 cut(s)	142
BstMWI	GCNNNNNNNGC	1 cut(s)	841
BstNI	CCWGG	2 cut(s)	63, 901
BstSCI	CCNGG	2 cut(s)	61, 899
BstSFI	CTRYAG	2 cut(s)	381, 948
BsuRI	GGCC	4 cut(s)	180, 352, 683, 899
BtsCI	GGATG	1 cut(s)	637
BtsI	GCAGTG	1 cut(s)	839
BtsIMutI	CAGTG	2 cut(s)	770, 839
BveI	ACCTGC	1 cut(s)	688
Cac8I	GCNNGC	1 cut(s)	559
CfoI	GCGC	1 cut(s)	136
Cfr10I	RCCGGY	1 cut(s)	683
Cfr13I	GGNCC	2 cut(s)	260, 351
Csp6I	GTAC	8 cut(s)	103, 118, 139, 466, 540, 659, 766, 809
CviAII	CATG	4 cut(s)	182, 274, 346, 599
CviQI	GTAC	8 cut(s)	103, 118, 139, 466, 540, 659, 766, 809
DdeI	CTNAG	3 cut(s)	327, 500, 907
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
DraIII	CACNNNGTG	1 cut(s)	424
DrdI	GACNNNNNNGTC	1 cut(s)	44
DseDI	GACNNNNNNGTC	1 cut(s)	44
EaeI	YGGCCR	2 cut(s)	178, 681
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Eco130I	CCWWGG	1 cut(s)	627
Eco24I	GRGCYC	1 cut(s)	8
Eco32I	GATATC	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	260
EcoRII	CCWGG	2 cut(s)	61, 899
EcoRV	GATATC	1 cut(s)	172
EcoT14I	CCWWGG	1 cut(s)	627
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	627
FaeI	CATG	4 cut(s)	185, 277, 349, 602
FatI	CATG	4 cut(s)	181, 273, 345, 598
Fnu4HI	GCNGC	1 cut(s)	951
FokI	GGATG	1 cut(s)	644
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	1 cut(s)	951
FspBI	CTAG	1 cut(s)	480
GlaI	GCGC	1 cut(s)	135
GluI	GCNGC	1 cut(s)	951
GsuI	CTGGAG	1 cut(s)	300
HaeIII	GGCC	4 cut(s)	180, 352, 683, 899
HapII	CCGG	2 cut(s)	100, 684
HhaI	GCGC	1 cut(s)	136
Hin1II	CATG	4 cut(s)	185, 277, 349, 602
Hin6I	GCGC	1 cut(s)	134
HinP1I	GCGC	1 cut(s)	134
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HindIII	AAGCTT	2 cut(s)	23, 723
HinfI	GANTC	4 cut(s)	386, 470, 504, 653
HpaI	GTTAAC	1 cut(s)	12
HpaII	CCGG	2 cut(s)	100, 684
HphI	GGTGA	4 cut(s)	571, 647, 698, 905
Hpy166II	GTNNAC	4 cut(s)	12, 84, 783, 826
Hpy188I	TCNGA	3 cut(s)	165, 330, 409
Hpy188III	TCNNGA	3 cut(s)	55, 317, 866
Hpy8I	GTNNAC	4 cut(s)	12, 84, 783, 826
Hpy99I	CGWCG	2 cut(s)	50, 593
HpyAV	CCTTC	3 cut(s)	281, 506, 672
HpyCH4III	ACNGT	4 cut(s)	122, 669, 863, 887
HpyCH4IV	ACGT	2 cut(s)	228, 603
HpyCH4V	TGCA	3 cut(s)	155, 697, 950
HpyF10VI	GCNNNNNNNGC	1 cut(s)	841
HpyF3I	CTNAG	3 cut(s)	327, 500, 907
HpySE526I	ACGT	2 cut(s)	228, 603
Hsp92II	CATG	4 cut(s)	185, 277, 349, 602
HspAI	GCGC	1 cut(s)	134
KpnI	GGTACC	1 cut(s)	662
KspAI	GTTAAC	1 cut(s)	12
Kzo9I	GATC	1 cut(s)	142
LmnI	GCTCC	3 cut(s)	415, 452, 705
MaeI	CTAG	1 cut(s)	480
MaeII	ACGT	2 cut(s)	228, 603
MaeIII	GTNAC	4 cut(s)	233, 307, 635, 937
MalI	GATC	1 cut(s)	144
MboI	GATC	1 cut(s)	142
MboII	GAAGA	3 cut(s)	125, 235, 332
MhlI	GDGCHC	2 cut(s)	8, 420
MlsI	TGGCCA	1 cut(s)	180
MluCI	AATT	4 cut(s)	147, 367, 398, 943
MluNI	TGGCCA	1 cut(s)	180
MlyI	GAGTC	2 cut(s)	479, 662
MmeI	TCCRAC	1 cut(s)	393
MnlI	CCTC	9 cut(s)	97, 193, 281, 518, 520, 610, 756, 825, 889
Mox20I	TGGCCA	1 cut(s)	180
MscI	TGGCCA	1 cut(s)	180
MseI	TTAA	3 cut(s)	11, 621, 955
Msp20I	TGGCCA	1 cut(s)	180
MspI	CCGG	2 cut(s)	100, 684
MspR9I	CCNGG	2 cut(s)	63, 901
MvaI	CCWGG	2 cut(s)	63, 901
MwoI	GCNNNNNNNGC	1 cut(s)	841
NdeII	GATC	1 cut(s)	142
NlaIII	CATG	4 cut(s)	185, 277, 349, 602
NlaIV	GGNNCC	3 cut(s)	204, 660, 836
NmuCI	GTSAC	2 cut(s)	307, 635
NspV	TTCGAA	1 cut(s)	441
PcsI	WCGNNNNNNNCGW	3 cut(s)	42, 126, 234
PfeI	GAWTC	2 cut(s)	386, 504
PflMI	CCANNNNNTGG	1 cut(s)	248
PkrI	GCNGC	1 cut(s)	952
PleI	GAGTC	2 cut(s)	478, 661
PpsI	GAGTC	2 cut(s)	478, 661
Psp1406I	AACGTT	1 cut(s)	228
Psp6I	CCWGG	2 cut(s)	61, 899
PspGI	CCWGG	2 cut(s)	61, 899
PspN4I	GGNNCC	3 cut(s)	204, 660, 836
PspPI	GGNCC	2 cut(s)	260, 351
PstI	CTGCAG	1 cut(s)	952
RsaI	GTAC	8 cut(s)	104, 119, 140, 467, 541, 660, 767, 810
RsaNI	GTAC	8 cut(s)	103, 118, 139, 466, 540, 659, 766, 809
SaqAI	TTAA	3 cut(s)	11, 621, 955
SatI	GCNGC	1 cut(s)	951
Sau3AI	GATC	1 cut(s)	142
Sau96I	GGNCC	2 cut(s)	260, 351
SchI	GAGTC	2 cut(s)	479, 662
ScrFI	CCNGG	2 cut(s)	63, 901
SduI	GDGCHC	2 cut(s)	8, 420
SfcI	CTRYAG	2 cut(s)	381, 948
SfuI	TTCGAA	1 cut(s)	441
SinI	GGWCC	1 cut(s)	260
SmlI	CTYRAG	4 cut(s)	67, 509, 547, 866
SmoI	CTYRAG	4 cut(s)	67, 509, 547, 866
Sse9I	AATT	4 cut(s)	147, 367, 398, 943
SsiI	CCGC	1 cut(s)	933
SspMI	CTAG	1 cut(s)	480
StyD4I	CCNGG	2 cut(s)	61, 899
StyI	CCWWGG	1 cut(s)	627
TaaI	ACNGT	4 cut(s)	122, 669, 863, 887
TaiI	ACGT	2 cut(s)	231, 606
TaqI	TCGA	5 cut(s)	36, 48, 111, 441, 736
TaqII	GACCGA	1 cut(s)	277
TasI	AATT	4 cut(s)	147, 367, 398, 943
TatI	WGTACW	1 cut(s)	539
TfiI	GAWTC	2 cut(s)	386, 504
Tru1I	TTAA	3 cut(s)	11, 621, 955
Tru9I	TTAA	3 cut(s)	11, 621, 955
TscAI	CASTG	2 cut(s)	777, 846
TseFI	GTSAC	2 cut(s)	307, 635
TseI	GCWGC	1 cut(s)	950
Tsp45I	GTSAC	2 cut(s)	307, 635
TspDTI	ATGAA	2 cut(s)	300, 378
TspGWI	ACGGA	2 cut(s)	34, 810
TspRI	CASTG	2 cut(s)	777, 846
Van91I	CCANNNNNTGG	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	260
XapI	RAATTY	2 cut(s)	147, 943
XspI	CTAG	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.