RLG00000034697

oxidoreductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001604
Physical Location & Seq
Forward (+)
51887479 .. 51889016
1538 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034697

Sequence Viewer

Length: 951 bp
ATGGGTTCCATGACACTTCCCAAACAGCTTCCCACCATCAATTTTTCCCTCCAGGACTTGAAGCCTGGCTCAAGCTCCTGGGCTTCCACCTGCAAACAAGTCCGCTATGCACTAGAAGAATACGGTTGTTTTGTGGCATTGTACCAACAAGTTTCCCCACAGCTTATGGACAATATCTTTGGCCAATCCAAGGATTTGTTCGAGGTTCCCCTCGAAAACAAAGTCAAGAACACCAGCGAGGAGCCTTACCGTGGCTATATCGGACCAAACCCGCTCATGCCGCTCTATGAAGGCATGGCCATTGATAACGTCACATCCCCACAAGAAACTCAAAAGTTCAGGGATCTCATGTGGCCTAATGGAAAGGCCAAATTCTGCGAAATCACAGATCTATTTGCCAAGTTGCTCGGGAACTTGGAAAACACTGTGGAAAAGATGTTGTTCGAAAGCTTCGGGATACCCCAAGAGCAATATGAATCGTTGGCGAGTTCAAACAGTCATCTTCTTCGTTTTCTCAAGTATAGGACACCAGAAGAGAGTGACGCAAACATCAGGTTTCCGAGCCACACGGACAAGAACTTCACCACCATTGTTGTTCAGCATGATGTCGGTGGCCTCGAGGTTCTAACTAAGGATGGTAATTGGATTAGTGTTGAGTCAGCACCTTTTCAATTCCTCTACATGGCTGGTGATGGACTTCAGGTATGGAGCAATGACAGAATAAAAGCATGCCAGCATCGAGTGAAGAACTGCGGAGACAAGACTCGATACTCGCTGGGAATGTTTACGTTTAACAATGGAGTATTCCAAGTGCCCAAAGAGTTAGTAGACGACAGCCACCCACTCCTCTACAAGCAGTTCGACAGCCGTGGTTTCATAAGATTTTACACCACACCGGAGGCTAAGAAGGAAGATTCGCCCATCAAAGCGTACTGTGGTGTTAAAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

317

Amino Acids

36.02

Weight (kDa)

5.83

Isoelectric Point (pI)

41.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 10 - 88 3.2e-13 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 172 - 263 2.4e-20 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 98
AbsI CCTCGAGG 1 cut(s) 617
Acc36I ACCTGC 1 cut(s) 98
AccBSI CCGCTC 2 cut(s) 274, 283
AccI GTMKAC 1 cut(s) 828
AciI CCGC 4 cut(s) 103, 272, 281, 753
AclWI GGATC 1 cut(s) 351
AcoI YGGCCR 2 cut(s) 181, 297
AcsI RAATTY 1 cut(s) 371
AcuI CTGAAG 1 cut(s) 683
AfaI GTAC 2 cut(s) 143, 932
AfiI CCNNNNNNNGG 3 cut(s) 190, 251, 682
AgsI TTSAA 3 cut(s) 61, 492, 671
AjnI CCWGG 3 cut(s) 51, 64, 77
AjuI GAANNNNNNNTTGG 2 cut(s) 182, 214
AluBI AGCT 4 cut(s) 28, 75, 163, 450
AluI AGCT 4 cut(s) 28, 75, 163, 450
Alw26I GTCTC 1 cut(s) 750
AlwI GGATC 1 cut(s) 351
Ama87I CYCGRG 2 cut(s) 407, 617
AoxI GGCC 5 cut(s) 181, 297, 353, 366, 613
ApoI RAATTY 1 cut(s) 371
ArsI GACNNNNNNTTYG 4 cut(s) 161, 193, 207, 239
AspS9I GGNCC 1 cut(s) 263
AsuHPI GGTGA 2 cut(s) 574, 701
AsuII TTCGAA 1 cut(s) 444
AvaI CYCGRG 2 cut(s) 407, 617
AvaII GGWCC 1 cut(s) 263
BaeGI GKGCMC 1 cut(s) 816
BalI TGGCCA 2 cut(s) 183, 299
BccI CCATC 4 cut(s) 44, 629, 686, 929
BceAI ACGGC 1 cut(s) 852
BciT130I CCWGG 3 cut(s) 53, 66, 79
BciVI GTATCC 1 cut(s) 450
BcoDI GTCTC 1 cut(s) 750
BfaI CTAG 2 cut(s) 113, 949
BfuAI ACCTGC 1 cut(s) 98
BfuI GTATCC 1 cut(s) 450
BglII AGATCT 1 cut(s) 388
BisI GCNGC 1 cut(s) 281
BlsI GCNGC 1 cut(s) 282
Bme1390I CCNGG 3 cut(s) 53, 66, 79
Bme18I GGWCC 1 cut(s) 263
BmeT110I CYCGRG 2 cut(s) 407, 617
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 3 cut(s) 7, 207, 243
BmrFI CCNGG 3 cut(s) 53, 66, 79
BmsI GCATC 1 cut(s) 745
BpmI CTGGAG 1 cut(s) 35
Bpu14I TTCGAA 1 cut(s) 444
BpuEI CTTGAG 2 cut(s) 55, 500
BsaJI CCNNGG 4 cut(s) 78, 189, 250, 868
BsaWI WCCGGW 1 cut(s) 895
Bsc4I CCNNNNNNNGG 3 cut(s) 190, 251, 682
Bse3DI GCAATG 1 cut(s) 718
BseBI CCWGG 3 cut(s) 53, 66, 79
BseDI CCNNGG 4 cut(s) 78, 189, 250, 868
BseGI GGATG 2 cut(s) 314, 640
BseLI CCNNNNNNNGG 3 cut(s) 190, 251, 682
BseMI GCAATG 1 cut(s) 718
BseRI GAGGAG 2 cut(s) 254, 836
BseSI GKGCMC 1 cut(s) 816
BseYI CCCAGC 1 cut(s) 775
BshFI GGCC 5 cut(s) 183, 299, 355, 368, 615
BsiHKCI CYCGRG 2 cut(s) 407, 617
BsiSI CCGG 1 cut(s) 896
BslI CCNNNNNNNGG 3 cut(s) 190, 251, 682
BsmAI GTCTC 1 cut(s) 750
BsnI GGCC 5 cut(s) 183, 299, 355, 368, 615
BsoBI CYCGRG 2 cut(s) 407, 617
Bsp119I TTCGAA 1 cut(s) 444
Bsp1286I GDGCHC 1 cut(s) 816
Bsp143I GATC 2 cut(s) 343, 388
BspACI CCGC 4 cut(s) 103, 272, 281, 753
BspANI GGCC 5 cut(s) 183, 299, 355, 368, 615
BspLI GGNNCC 3 cut(s) 7, 207, 243
BspMI ACCTGC 1 cut(s) 98
BspPI GGATC 1 cut(s) 351
BspT104I TTCGAA 1 cut(s) 444
BsrBI CCGCTC 2 cut(s) 274, 283
BsrDI GCAATG 1 cut(s) 718
BssECI CCNNGG 4 cut(s) 78, 189, 250, 868
BssMI GATC 2 cut(s) 343, 388
BssT1I CCWWGG 1 cut(s) 189
Bst2UI CCWGG 3 cut(s) 53, 66, 79
Bst4CI ACNGT 5 cut(s) 125, 251, 427, 497, 935
Bst6I CTCTTC 1 cut(s) 528
BstBI TTCGAA 1 cut(s) 444
BstC8I GCNNGC 2 cut(s) 730, 734
BstDEI CTNAG 2 cut(s) 630, 903
BstDSI CCRYGG 2 cut(s) 250, 868
BstF5I GGATG 2 cut(s) 314, 640
BstKTI GATC 2 cut(s) 346, 391
BstMAI GTCTC 1 cut(s) 750
BstMBI GATC 2 cut(s) 343, 388
BstMWI GCNNNNNNNGC 1 cut(s) 280
BstNI CCWGG 3 cut(s) 53, 66, 79
BstNSI RCATGY 1 cut(s) 732
BstSCI CCNGG 3 cut(s) 51, 64, 77
BstSLI GKGCMC 1 cut(s) 816
BstX2I RGATCY 2 cut(s) 343, 388
BstYI RGATCY 2 cut(s) 343, 388
BsuI GTATCC 1 cut(s) 450
BsuRI GGCC 5 cut(s) 183, 299, 355, 368, 615
BtgI CCRYGG 2 cut(s) 250, 868
BtsCI GGATG 2 cut(s) 314, 640
BtsIMutI CAGTG 1 cut(s) 423
BveI ACCTGC 1 cut(s) 98
Cac8I GCNNGC 2 cut(s) 730, 734
Cfr13I GGNCC 1 cut(s) 263
CseI GACGC 1 cut(s) 551
Csp6I GTAC 2 cut(s) 142, 931
CspCI CAANNNNNGTGG 2 cut(s) 574, 609
CviAII CATG 7 cut(s) 10, 277, 295, 349, 602, 682, 729
CviQI GTAC 2 cut(s) 142, 931
DdeI CTNAG 2 cut(s) 630, 903
DpnI GATC 2 cut(s) 345, 390
DpnII GATC 2 cut(s) 343, 388
EaeI YGGCCR 2 cut(s) 181, 297
Eam1104I CTCTTC 1 cut(s) 528
EarI CTCTTC 1 cut(s) 528
Eco130I CCWWGG 1 cut(s) 189
Eco47I GGWCC 1 cut(s) 263
Eco57I CTGAAG 1 cut(s) 683
Eco88I CYCGRG 2 cut(s) 407, 617
EcoRII CCWGG 3 cut(s) 51, 64, 77
EcoT14I CCWWGG 1 cut(s) 189
ErhI CCWWGG 1 cut(s) 189
FaeI CATG 7 cut(s) 13, 280, 298, 352, 605, 685, 732
FatI CATG 7 cut(s) 9, 276, 294, 348, 601, 681, 728
FauI CCCGC 1 cut(s) 279
FblI GTMKAC 1 cut(s) 828
Fnu4HI GCNGC 1 cut(s) 281
FokI GGATG 2 cut(s) 301, 647
Fsp4HI GCNGC 1 cut(s) 281
FspBI CTAG 2 cut(s) 113, 949
GluI GCNGC 1 cut(s) 281
GsaI CCCAGC 1 cut(s) 779
GsuI CTGGAG 1 cut(s) 35
HaeIII GGCC 5 cut(s) 183, 299, 355, 368, 615
HapII CCGG 1 cut(s) 896
HgaI GACGC 1 cut(s) 551
Hin1II CATG 7 cut(s) 13, 280, 298, 352, 605, 685, 732
HindIII AAGCTT 1 cut(s) 448
HinfI GANTC 4 cut(s) 476, 656, 763, 914
HpaII CCGG 1 cut(s) 896
HphI GGTGA 2 cut(s) 574, 701
Hpy166II GTNNAC 2 cut(s) 786, 829
Hpy188I TCNGA 2 cut(s) 263, 561
Hpy188III TCNNGA 3 cut(s) 226, 409, 454
Hpy8I GTNNAC 2 cut(s) 786, 829
HpyAV CCTTC 2 cut(s) 284, 901
HpyCH4III ACNGT 5 cut(s) 125, 251, 427, 497, 935
HpyCH4IV ACGT 2 cut(s) 309, 788
HpyCH4V TGCA 2 cut(s) 93, 110
HpyF10VI GCNNNNNNNGC 1 cut(s) 280
HpyF3I CTNAG 2 cut(s) 630, 903
HpySE526I ACGT 2 cut(s) 309, 788
Hsp92II CATG 7 cut(s) 13, 280, 298, 352, 605, 685, 732
Kzo9I GATC 2 cut(s) 343, 388
LmnI GCTCC 3 cut(s) 80, 241, 708
LweI GCATC 1 cut(s) 745
MaeI CTAG 2 cut(s) 113, 949
MaeII ACGT 2 cut(s) 309, 788
MaeIII GTNAC 2 cut(s) 310, 539
MalI GATC 2 cut(s) 345, 390
MbiI CCGCTC 2 cut(s) 274, 283
MboI GATC 2 cut(s) 343, 388
MboII GAAGA 6 cut(s) 128, 494, 497, 545, 757, 923
MflI RGATCY 2 cut(s) 343, 388
MhlI GDGCHC 1 cut(s) 816
MlsI TGGCCA 2 cut(s) 183, 299
MluCI AATT 4 cut(s) 40, 371, 640, 671
MluNI TGGCCA 2 cut(s) 183, 299
MlyI GAGTC 2 cut(s) 665, 757
MnlI CCTC 9 cut(s) 59, 196, 221, 232, 613, 626, 686, 857, 892
Mox20I TGGCCA 2 cut(s) 183, 299
MscI TGGCCA 2 cut(s) 183, 299
MseI TTAA 2 cut(s) 792, 942
Msp20I TGGCCA 2 cut(s) 183, 299
MspI CCGG 1 cut(s) 896
MspR9I CCNGG 3 cut(s) 53, 66, 79
MvaI CCWGG 3 cut(s) 53, 66, 79
MwoI GCNNNNNNNGC 1 cut(s) 280
NdeII GATC 2 cut(s) 343, 388
NlaIII CATG 7 cut(s) 13, 280, 298, 352, 605, 685, 732
NlaIV GGNNCC 3 cut(s) 7, 207, 243
NmuCI GTSAC 2 cut(s) 310, 539
NspI RCATGY 1 cut(s) 732
NspV TTCGAA 1 cut(s) 444
PaeI GCATGC 1 cut(s) 732
PaeR7I CTCGAG 1 cut(s) 617
PaqCI CACCTGC 1 cut(s) 98
PcsI WCGNNNNNNNCGW 1 cut(s) 615
PfeI GAWTC 2 cut(s) 476, 914
PfoI TCCNGGA 1 cut(s) 51
PkrI GCNGC 1 cut(s) 282
PleI GAGTC 2 cut(s) 664, 757
PpsI GAGTC 2 cut(s) 664, 757
Psp6I CCWGG 3 cut(s) 51, 64, 77
PspFI CCCAGC 1 cut(s) 775
PspGI CCWGG 3 cut(s) 51, 64, 77
PspN4I GGNNCC 3 cut(s) 7, 207, 243
PspPI GGNCC 1 cut(s) 263
PspXI VCTCGAGB 1 cut(s) 617
PsuI RGATCY 2 cut(s) 343, 388
RsaI GTAC 2 cut(s) 143, 932
RsaNI GTAC 2 cut(s) 142, 931
SaqAI TTAA 2 cut(s) 792, 942
SatI GCNGC 1 cut(s) 281
Sau3AI GATC 2 cut(s) 343, 388
Sau96I GGNCC 1 cut(s) 263
SchI GAGTC 2 cut(s) 665, 757
ScrFI CCNGG 3 cut(s) 53, 66, 79
SduI GDGCHC 1 cut(s) 816
SfaNI GCATC 1 cut(s) 745
Sfr274I CTCGAG 1 cut(s) 617
SfuI TTCGAA 1 cut(s) 444
SinI GGWCC 1 cut(s) 263
SlaI CTCGAG 1 cut(s) 617
SmlI CTYRAG 3 cut(s) 70, 515, 617
SmoI CTYRAG 3 cut(s) 70, 515, 617
SphI GCATGC 1 cut(s) 732
Sse9I AATT 4 cut(s) 40, 371, 640, 671
SsiI CCGC 4 cut(s) 103, 272, 281, 753
SspMI CTAG 2 cut(s) 113, 949
StyD4I CCNGG 3 cut(s) 51, 64, 77
StyI CCWWGG 1 cut(s) 189
TaaI ACNGT 5 cut(s) 125, 251, 427, 497, 935
TaiI ACGT 2 cut(s) 312, 791
TaqI TCGA 7 cut(s) 201, 213, 444, 618, 739, 766, 861
TasI AATT 4 cut(s) 40, 371, 640, 671
TauI GCSGC 1 cut(s) 283
TfiI GAWTC 2 cut(s) 476, 914
Tru1I TTAA 2 cut(s) 792, 942
Tru9I TTAA 2 cut(s) 792, 942
TscAI CASTG 1 cut(s) 430
TseFI GTSAC 2 cut(s) 310, 539
Tsp45I GTSAC 2 cut(s) 310, 539
TspDTI ATGAA 3 cut(s) 303, 489, 865
TspGWI ACGGA 1 cut(s) 584
TspRI CASTG 1 cut(s) 430
VpaK11BI GGWCC 1 cut(s) 263
XapI RAATTY 1 cut(s) 371
XceI RCATGY 1 cut(s) 732
XhoI CTCGAG 1 cut(s) 617
XmiI GTMKAC 1 cut(s) 828
XspI CTAG 2 cut(s) 113, 949
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.