Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001604

Physical Location & Seq

Genomic Coordinates Forward (+)

22419680 .. 22420844

Gene Structure 1165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g19460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGGTTCCCTAGCACCTCCCAAGCTTCCTACTATCAACTTCTCTGCCGAAGACTTGAAGCCCGGATCAAGTTCTTGGTTGTCCACCGCCAAACAAGTCCGCTCTGCACTCGAAGAATACGGCTCTTTCGTCGCACAGTACGATCAAATTTCTCCAGAGCTTCACAACAACATCTTCGGCCAGGCCGCAGATCTGTTTGAGGTTCCCTTAGAAAACAAGGTAAAGAACGTTGGTGAGCAACCATATCATGGGTATATGGGTCCAAACCCCGCCATTCCACTCTACGAGAGCTTGTGCATCGATAATGTGACATCCCCCCAGGCAACTCACAAGTTCAAGAATCTGATGTGGCCTGCTGGAAAGAAAAACTTCTGTGAAACCACAGATTCATTTGGCCAGTTATTAGCTGATTTGGAACGAACAGTAGGACAAATGATATTCGATAGCTATGGGGTAGGAAACGAATACGAGACTGTTGTTTGTTGCAACAGTCACCTCCTTAGATTCATCAAATATAAGGTGCCGGAGGACACTAATACTACGTTAAGGTTTCCAATGCATACAGACAATAACTTCACAACCATAGTTGTTCAGCATGATGTTAGTGGGTTGGAGGTTAAAACAAAGGAAGGTGATTGGATTAATATCGAGTCTGTACCTTCGCACTTCTTATTCATGGCAGCCGAAGGATTGCAGGTATGGAGCAACGACAGAATAAAAGCTTGCCAACATCTTGTAAAACATCGCGGGGACAAGACGAGATACTCTCTCGGTCTGTTTACATTCAACAATGGAGTCATACAAGTACCAAAAGAACTAGTGGACGATGAGCACCCACTGCTCTATAATCCATGCGACAGTCGTGGCTATACACGATTTCATGCTTCAGCAGAGTCCAAGAAGGCAGCTTCCCGTATCAAAGCTTACTGCGGCATCGAAGTTGAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

317

Amino Acids

35.49

Weight (kDa)

5.78

Isoelectric Point (pI)

35.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	9 - 87	8.8e-10	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	166 - 261	3.2e-17	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001604)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28210 FvH4_6g42700 FvH4_7g15780
malus_domestica	MD03G1085000.v1.1 MD05G1208700.v1.1 MD10G1195200.v1.1 MD11G1092600.v1.1
prunus_persica	Prupe.4G262900_v2.0.a1 Prupe.4G263000_v2.0.a1 Prupe.4G263100_v2.0.a1 Prupe.4G264400_v2.0.a1
pyrus_communis	pycom03g06720 pycom05g19460 pycom10g16890 pycom11g07800 pycom11g07820
rosa_chinensis	RchiOBHm_Chr1g0358581 RchiOBHm_Chr4g0395841 RchiOBHm_Chr4g0444921 RchiOBHm_Chr5g0050321 RchiOBHm_Chr5g0050341
rosa_laevigata	RLG00000027944 RLG00000034696 RLG00000034697 RLG00000034698
rosa_multiflora	Rmu_sc0001103.1_g000025 Rmu_sc0001609.1_g000014 Rmu_sc0005060.1_g000004 Rmu_sc0005060.1_g000006
rosa_roxburghii	Rroxscaffold_1G00027250 Rroxscaffold_1G00030670 Rroxscaffold_1G00030700 Rroxscaffold_4G00297680 Rroxscaffold_4G00297780
rosa_rugosa	Rorug01G0262600 Rorug01G0262700 Rorug05G0260000 Rorug05G0260000 Rorug05G0260100
rosa_samantha	Rh1BG243900 Rh1CG260900 Rh4BG429600 Rh4DG425500 Rh5AG331700 Rh5AG331800 Rh5CG369400 Rh5CG369500
rosa_wichuraiana	Rw1G024650 Rw5G031370 Rw5G031380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	685
AccB1I	GGYRCC	1 cut(s)	520
AccB7I	CCANNNNNTGG	1 cut(s)	248
AccBSI	CCGCTC	1 cut(s)	102
AccII	CGCG	1 cut(s)	747
AciI	CCGC	6 cut(s)	87, 100, 186, 270, 747, 930
AclI	AACGTT	1 cut(s)	228
AclWI	GGATC	1 cut(s)	73
AcoI	YGGCCR	2 cut(s)	178, 394
AcsI	RAATTY	1 cut(s)	147
AcuI	CTGAAG	1 cut(s)	870
AfaI	GTAC	3 cut(s)	140, 657, 807
AfiI	CCNNNNNNNGG	1 cut(s)	248
AgsI	TTSAA	4 cut(s)	58, 337, 787, 944
AhlI	ACTAGT	1 cut(s)	817
AjnI	CCWGG	2 cut(s)	180, 318
AluBI	AGCT	8 cut(s)	25, 160, 291, 407, 447, 722, 908, 923
AluI	AGCT	8 cut(s)	25, 160, 291, 407, 447, 722, 908, 923
Alw21I	GWGCWC	1 cut(s)	834
Alw26I	GTCTC	1 cut(s)	464
AlwI	GGATC	1 cut(s)	73
AoxI	GGCC	4 cut(s)	178, 183, 350, 394
ApeKI	GCWGC	2 cut(s)	680, 905
ApoI	RAATTY	1 cut(s)	147
AseI	ATTAAT	1 cut(s)	642
Asp700I	GAANNNNTTC	1 cut(s)	368
AspS9I	GGNCC	1 cut(s)	260
AsuC2I	CCSGG	1 cut(s)	63
AsuHPI	GGTGA	3 cut(s)	245, 485, 644
AvaII	GGWCC	1 cut(s)	260
BalI	TGGCCA	1 cut(s)	396
BanI	GGYRCC	1 cut(s)	520
BbsI	GAAGAC	1 cut(s)	57
Bbv12I	GWGCWC	1 cut(s)	834
BbvI	GCAGC	2 cut(s)	692, 917
BceAI	ACGGC	1 cut(s)	136
BciT130I	CCWGG	2 cut(s)	182, 320
BcnI	CCSGG	1 cut(s)	63
BcoDI	GTCTC	1 cut(s)	464
BcuI	ACTAGT	1 cut(s)	817
BfaI	CTAG	2 cut(s)	11, 818
BfuAI	ACCTGC	1 cut(s)	685
BglII	AGATCT	1 cut(s)	190
BisI	GCNGC	4 cut(s)	186, 681, 906, 931
BlsI	GCNGC	4 cut(s)	187, 682, 907, 932
Bme1390I	CCNGG	3 cut(s)	63, 182, 320
Bme18I	GGWCC	1 cut(s)	260
BmgT120I	GGNCC	1 cut(s)	260
BmiI	GGNNCC	4 cut(s)	7, 204, 261, 522
BmrFI	CCNGG	3 cut(s)	63, 182, 320
BmsI	GCATC	2 cut(s)	306, 942
BpiI	GAAGAC	1 cut(s)	57
BplI	GAGNNNNNCTC	2 cut(s)	751, 783
BpmI	CTGGAG	1 cut(s)	138
BpuMI	CCSGG	1 cut(s)	63
Bsa29I	ATCGAT	1 cut(s)	300
BsaBI	GATNNNNATC	1 cut(s)	644
BsaJI	CCNNGG	1 cut(s)	318
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse1I	ACTGG	1 cut(s)	397
Bse8I	GATNNNNATC	1 cut(s)	644
BseBI	CCWGG	2 cut(s)	182, 320
BseCI	ATCGAT	1 cut(s)	300
BseDI	CCNNGG	1 cut(s)	318
BseGI	GGATG	1 cut(s)	311
BseJI	GATNNNNATC	1 cut(s)	644
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseNI	ACTGG	1 cut(s)	397
BseXI	GCAGC	2 cut(s)	692, 917
BsgI	GTGCAG	1 cut(s)	90
Bsh1236I	CGCG	1 cut(s)	747
BshFI	GGCC	4 cut(s)	180, 185, 352, 396
BshNI	GGYRCC	1 cut(s)	520
BshVI	ATCGAT	1 cut(s)	300
BsiHKAI	GWGCWC	1 cut(s)	834
BsiSI	CCGG	2 cut(s)	63, 524
BslFI	GGGAC	1 cut(s)	764
BslI	CCNNNNNNNGG	1 cut(s)	248
BsmAI	GTCTC	1 cut(s)	464
BsmFI	GGGAC	1 cut(s)	764
BsnI	GGCC	4 cut(s)	180, 185, 352, 396
Bsp1286I	GDGCHC	1 cut(s)	834
Bsp143I	GATC	3 cut(s)	65, 142, 190
BspACI	CCGC	6 cut(s)	87, 100, 186, 270, 747, 930
BspANI	GGCC	4 cut(s)	180, 185, 352, 396
BspDI	ATCGAT	1 cut(s)	300
BspFNI	CGCG	1 cut(s)	747
BspLI	GGNNCC	4 cut(s)	7, 204, 261, 522
BspMI	ACCTGC	1 cut(s)	685
BspPI	GGATC	1 cut(s)	73
BspT107I	GGYRCC	1 cut(s)	520
BsrBI	CCGCTC	1 cut(s)	102
BsrI	ACTGG	1 cut(s)	397
BssECI	CCNNGG	1 cut(s)	318
BssMI	GATC	3 cut(s)	65, 142, 190
Bst2UI	CCWGG	2 cut(s)	182, 320
Bst4CI	ACNGT	5 cut(s)	138, 424, 475, 491, 860
BstAPI	GCANNNNNTGC	1 cut(s)	838
BstC8I	GCNNGC	2 cut(s)	354, 724
BstDEI	CTNAG	2 cut(s)	208, 500
BstF5I	GGATG	1 cut(s)	311
BstFNI	CGCG	1 cut(s)	747
BstKTI	GATC	3 cut(s)	68, 145, 193
BstMAI	GTCTC	1 cut(s)	464
BstMBI	GATC	3 cut(s)	65, 142, 190
BstMWI	GCNNNNNNNGC	1 cut(s)	838
BstNI	CCWGG	2 cut(s)	182, 320
BstSCI	CCNGG	3 cut(s)	61, 180, 318
BstUI	CGCG	1 cut(s)	747
BstV1I	GCAGC	2 cut(s)	692, 917
BstV2I	GAAGAC	1 cut(s)	57
BstX2I	RGATCY	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	190
Bsu15I	ATCGAT	1 cut(s)	300
BsuRI	GGCC	4 cut(s)	180, 185, 352, 396
BsuTUI	ATCGAT	1 cut(s)	300
BtgZI	GCGATG	1 cut(s)	728
BtsCI	GGATG	1 cut(s)	311
BtsI	GCAGTG	1 cut(s)	836
BtsIMutI	CAGTG	1 cut(s)	836
BveI	ACCTGC	1 cut(s)	685
Cac8I	GCNNGC	2 cut(s)	354, 724
Cfr13I	GGNCC	1 cut(s)	260
ClaI	ATCGAT	1 cut(s)	300
Csp6I	GTAC	3 cut(s)	139, 656, 806
CviAII	CATG	5 cut(s)	248, 596, 676, 852, 881
CviQI	GTAC	3 cut(s)	139, 656, 806
DdeI	CTNAG	2 cut(s)	208, 500
DpnI	GATC	3 cut(s)	67, 144, 192
DpnII	GATC	3 cut(s)	65, 142, 190
EaeI	YGGCCR	2 cut(s)	178, 394
Eco47I	GGWCC	1 cut(s)	260
Eco57I	CTGAAG	1 cut(s)	870
EcoRII	CCWGG	2 cut(s)	180, 318
EcoT22I	ATGCAT	1 cut(s)	561
FaeI	CATG	5 cut(s)	251, 599, 679, 855, 884
FalI	AAGNNNNNCTT	2 cut(s)	353, 385
FaqI	GGGAC	1 cut(s)	764
FatI	CATG	5 cut(s)	247, 595, 675, 851, 880
FauI	CCCGC	2 cut(s)	277, 740
Fnu4HI	GCNGC	4 cut(s)	186, 681, 906, 931
FokI	GGATG	1 cut(s)	298
Fsp4HI	GCNGC	4 cut(s)	186, 681, 906, 931
FspBI	CTAG	2 cut(s)	11, 818
GluI	GCNGC	4 cut(s)	186, 681, 906, 931
GsuI	CTGGAG	1 cut(s)	138
HaeIII	GGCC	4 cut(s)	180, 185, 352, 396
HapII	CCGG	2 cut(s)	63, 524
Hin1II	CATG	5 cut(s)	251, 599, 679, 855, 884
HindIII	AAGCTT	3 cut(s)	23, 720, 921
HinfI	GANTC	6 cut(s)	340, 386, 504, 650, 795, 893
HpaII	CCGG	2 cut(s)	63, 524
HphI	GGTGA	3 cut(s)	245, 485, 644
Hpy166II	GTNNAC	3 cut(s)	84, 780, 823
Hpy188I	TCNGA	1 cut(s)	345
Hpy188III	TCNNGA	2 cut(s)	155, 337
Hpy8I	GTNNAC	3 cut(s)	84, 780, 823
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	4 cut(s)	623, 669, 680, 895
HpyCH4III	ACNGT	5 cut(s)	138, 424, 475, 491, 860
HpyCH4IV	ACGT	2 cut(s)	228, 542
HpyCH4V	TGCA	5 cut(s)	107, 297, 486, 559, 694
HpyF10VI	GCNNNNNNNGC	1 cut(s)	838
HpyF3I	CTNAG	2 cut(s)	208, 500
HpySE526I	ACGT	2 cut(s)	228, 542
Hsp92II	CATG	5 cut(s)	251, 599, 679, 855, 884
Kzo9I	GATC	3 cut(s)	65, 142, 190
LmnI	GCTCC	1 cut(s)	702
Lsp1109I	GCAGC	2 cut(s)	692, 917
LweI	GCATC	2 cut(s)	306, 942
MaeI	CTAG	2 cut(s)	11, 818
MaeII	ACGT	2 cut(s)	228, 542
MaeIII	GTNAC	2 cut(s)	307, 491
MalI	GATC	3 cut(s)	67, 144, 192
MbiI	CCGCTC	1 cut(s)	102
MboI	GATC	3 cut(s)	65, 142, 190
MboII	GAAGA	3 cut(s)	62, 125, 166
MflI	RGATCY	1 cut(s)	190
MhlI	GDGCHC	1 cut(s)	834
MlsI	TGGCCA	1 cut(s)	396
MluCI	AATT	1 cut(s)	147
MluNI	TGGCCA	1 cut(s)	396
MlyI	GAGTC	3 cut(s)	659, 804, 902
MmeI	TCCRAC	1 cut(s)	591
MnlI	CCTC	5 cut(s)	27, 193, 506, 520, 607
Mox20I	TGGCCA	1 cut(s)	396
Mph1103I	ATGCAT	1 cut(s)	561
MroXI	GAANNNNTTC	1 cut(s)	368
MscI	TGGCCA	1 cut(s)	396
MseI	TTAA	3 cut(s)	545, 618, 642
Msp20I	TGGCCA	1 cut(s)	396
MspI	CCGG	2 cut(s)	63, 524
MspR9I	CCNGG	3 cut(s)	63, 182, 320
MvaI	CCWGG	2 cut(s)	182, 320
MvnI	CGCG	1 cut(s)	747
MwoI	GCNNNNNNNGC	1 cut(s)	838
NciI	CCSGG	1 cut(s)	63
NdeII	GATC	3 cut(s)	65, 142, 190
NlaIII	CATG	5 cut(s)	251, 599, 679, 855, 884
NlaIV	GGNNCC	4 cut(s)	7, 204, 261, 522
NmuCI	GTSAC	2 cut(s)	307, 491
NsiI	ATGCAT	1 cut(s)	561
PcsI	WCGNNNNNNNCGW	2 cut(s)	126, 138
PdmI	GAANNNNTTC	1 cut(s)	368
PfeI	GAWTC	3 cut(s)	340, 386, 504
PflMI	CCANNNNNTGG	1 cut(s)	248
PkrI	GCNGC	4 cut(s)	187, 682, 907, 932
PleI	GAGTC	3 cut(s)	658, 803, 901
PpsI	GAGTC	3 cut(s)	658, 803, 901
PshBI	ATTAAT	1 cut(s)	642
Psp1406I	AACGTT	1 cut(s)	228
Psp6I	CCWGG	2 cut(s)	180, 318
PspGI	CCWGG	2 cut(s)	180, 318
PspN4I	GGNNCC	4 cut(s)	7, 204, 261, 522
PspPI	GGNCC	1 cut(s)	260
PsuI	RGATCY	1 cut(s)	190
RsaI	GTAC	3 cut(s)	140, 657, 807
RsaNI	GTAC	3 cut(s)	139, 656, 806
SaqAI	TTAA	3 cut(s)	545, 618, 642
SatI	GCNGC	4 cut(s)	186, 681, 906, 931
Sau3AI	GATC	3 cut(s)	65, 142, 190
Sau96I	GGNCC	1 cut(s)	260
SchI	GAGTC	3 cut(s)	659, 804, 902
ScrFI	CCNGG	3 cut(s)	63, 182, 320
SduI	GDGCHC	1 cut(s)	834
SfaNI	GCATC	2 cut(s)	306, 942
SinI	GGWCC	1 cut(s)	260
SpeI	ACTAGT	1 cut(s)	817
Sse9I	AATT	1 cut(s)	147
SsiI	CCGC	6 cut(s)	87, 100, 186, 270, 747, 930
SspMI	CTAG	2 cut(s)	11, 818
StyD4I	CCNGG	3 cut(s)	61, 180, 318
TaaI	ACNGT	5 cut(s)	138, 424, 475, 491, 860
TaiI	ACGT	2 cut(s)	231, 545
TaqI	TCGA	5 cut(s)	111, 300, 441, 648, 936
TaqII	GACCGA	1 cut(s)	761
TasI	AATT	1 cut(s)	147
TauI	GCSGC	2 cut(s)	188, 933
TfiI	GAWTC	3 cut(s)	340, 386, 504
Tru1I	TTAA	3 cut(s)	545, 618, 642
Tru9I	TTAA	3 cut(s)	545, 618, 642
TscAI	CASTG	1 cut(s)	843
TseFI	GTSAC	2 cut(s)	307, 491
TseI	GCWGC	2 cut(s)	680, 905
Tsp45I	GTSAC	2 cut(s)	307, 491
TspDTI	ATGAA	4 cut(s)	378, 496, 664, 869
TspRI	CASTG	1 cut(s)	843
Van91I	CCANNNNNTGG	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	260
VspI	ATTAAT	1 cut(s)	642
XapI	RAATTY	1 cut(s)	147
XmnI	GAANNNNTTC	1 cut(s)	368
XspI	CTAG	2 cut(s)	11, 818
Zsp2I	ATGCAT	1 cut(s)	561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.