Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0001604

Physical Location & Seq

Genomic Coordinates Reverse (-)

5963958 .. 5965724

Gene Structure 1767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g07820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGGTTCCTTAACACTTCCAAAGCTTCCTACCATCAATTTCTCCATCGATGCCTTGAAGCCTGGCTCAAGTTCTTGGCTGTCCACCTCCAAACAAGTTCGATATGCACTCGAAGAGTACGGTTGTTTCGTGGCGCAGTACGATCAAGTTTCTGCACAACTTCTGAACAATATCTTTGGGCAGGCCAAAGATTTGTTTGAGGTTCCTTTGGAAAACAAAGTGAAGAACGTTAGTGATGAACCATATCGTGGGTATATTGGACCCAACCACCTCATGCCACTCTATGAAGGTATCGCCATTGATAATGTCACATCCCCACAAGAAACTCAGAAGTTCAAAAATCTCATGTGGCCCGATGGAAAGAGCAATTTCTGGCTATTTAAAAGCTATGGAGCAGAAAAGCAGTACGAGTCTGTTGCTAGTGCCAACAGCCACCTTCTTAGATTCCTCAAGTATAATAAACCAGAGGAAGCTGATCGTGCTACCTTGAGATTTGCGAGCCATACAGACAAGAACTTCACCACCATCGTCGTTCAACACGACGTTGGTGGTTTGGAGGTTAAGACCAAGGATGGTGACTGGATTAACATTGAGTCCGCACCTTCACAGTTCTTGTTCATGGCCGGTGATGGATTGCAGGTTTGTTCCCATTGCCATATAATTAAATACCATCAAGTACTTAGCTTTCAATTACAATATATACTAGTGCTACTTAGCTCAGTATGGAGCAATGATAGAATAAAAGCATGTCATCATCGAGTGAAGCATTGTGGAGATAAGACGAGGTACTCGCTTGGGTTGTTTACATTCAACAACGGAATAATACAGGTACCAGAAGAACTGGTGGACGAGAGGCACCCACTGCTCTATAACCCATTGGTTAGTCTTGAGTATATGAGGTTTCACAGTAGAGGTGAGGCCAGGAATTTAGTCTCTCCTCTCAAGACCTTTTGTGGTATTACAAATTCTACAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

326

Amino Acids

36.92

Weight (kDa)

7.18

Isoelectric Point (pI)

33.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	9 - 88	1e-11	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	149 - 269	1.8e-14	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001604)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28210 FvH4_6g42700 FvH4_7g15780
malus_domestica	MD03G1085000.v1.1 MD05G1208700.v1.1 MD10G1195200.v1.1 MD11G1092600.v1.1
prunus_persica	Prupe.4G262900_v2.0.a1 Prupe.4G263000_v2.0.a1 Prupe.4G263100_v2.0.a1 Prupe.4G264400_v2.0.a1
pyrus_communis	pycom03g06720 pycom05g19460 pycom10g16890 pycom11g07800 pycom11g07820
rosa_chinensis	RchiOBHm_Chr1g0358581 RchiOBHm_Chr4g0395841 RchiOBHm_Chr4g0444921 RchiOBHm_Chr5g0050321 RchiOBHm_Chr5g0050341
rosa_laevigata	RLG00000027944 RLG00000034696 RLG00000034697 RLG00000034698
rosa_multiflora	Rmu_sc0001103.1_g000025 Rmu_sc0001609.1_g000014 Rmu_sc0005060.1_g000004 Rmu_sc0005060.1_g000006
rosa_roxburghii	Rroxscaffold_1G00027250 Rroxscaffold_1G00030670 Rroxscaffold_1G00030700 Rroxscaffold_4G00297680 Rroxscaffold_4G00297780
rosa_rugosa	Rorug01G0262600 Rorug01G0262700 Rorug05G0260000 Rorug05G0260000 Rorug05G0260100
rosa_samantha	Rh1BG243900 Rh1CG260900 Rh4BG429600 Rh4DG425500 Rh5AG331700 Rh5AG331800 Rh5CG369400 Rh5CG369500
rosa_wichuraiana	Rw1G024650 Rw5G031370 Rw5G031380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	628
Acc65I	GGTACC	1 cut(s)	829
AccB1I	GGYRCC	2 cut(s)	829, 855
AccB7I	CCANNNNNTGG	1 cut(s)	248
AciI	CCGC	1 cut(s)	597
AclI	AACGTT	1 cut(s)	228
AcoI	YGGCCR	1 cut(s)	621
AcsI	RAATTY	2 cut(s)	925, 964
AfaI	GTAC	6 cut(s)	119, 140, 407, 678, 788, 831
AfiI	CCNNNNNNNGG	1 cut(s)	248
AgsI	TTSAA	5 cut(s)	58, 337, 536, 689, 811
AhlI	ACTAGT	1 cut(s)	703
AjnI	CCWGG	2 cut(s)	61, 920
AluBI	AGCT	5 cut(s)	25, 387, 473, 684, 717
AluI	AGCT	5 cut(s)	25, 387, 473, 684, 717
Alw26I	GTCTC	1 cut(s)	937
AoxI	GGCC	4 cut(s)	183, 350, 621, 918
ApoI	RAATTY	2 cut(s)	925, 964
Asp718I	GGTACC	1 cut(s)	829
AspLEI	GCGC	1 cut(s)	136
AspS9I	GGNCC	2 cut(s)	260, 351
AsuHPI	GGTGA	4 cut(s)	511, 587, 638, 926
AvaII	GGWCC	1 cut(s)	260
BanI	GGYRCC	2 cut(s)	829, 855
BccI	CCATC	7 cut(s)	41, 53, 350, 533, 566, 623, 678
BcgI	CGANNNNNNTGC	2 cut(s)	398, 432
BciT130I	CCWGG	2 cut(s)	63, 922
BcoDI	GTCTC	1 cut(s)	937
BcuI	ACTAGT	1 cut(s)	703
BfaI	CTAG	2 cut(s)	420, 704
BfmI	CTRYAG	1 cut(s)	969
BfuAI	ACCTGC	1 cut(s)	628
BmcAI	AGTACT	1 cut(s)	678
Bme1390I	CCNGG	2 cut(s)	63, 922
Bme18I	GGWCC	1 cut(s)	260
BmgT120I	GGNCC	2 cut(s)	260, 351
BmiI	GGNNCC	5 cut(s)	7, 204, 262, 831, 857
BmrFI	CCNGG	2 cut(s)	63, 922
BmsI	GCATC	1 cut(s)	40
BpuEI	CTTGAG	5 cut(s)	52, 434, 508, 908, 926
Bsa29I	ATCGAT	1 cut(s)	48
BsaJI	CCNNGG	1 cut(s)	567
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse118I	RCCGGY	1 cut(s)	623
Bse1I	ACTGG	2 cut(s)	584, 846
Bse3DI	GCAATG	2 cut(s)	649, 736
BseBI	CCWGG	2 cut(s)	63, 922
BseCI	ATCGAT	1 cut(s)	48
BseDI	CCNNGG	1 cut(s)	567
BseGI	GGATG	2 cut(s)	311, 577
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseMI	GCAATG	2 cut(s)	649, 736
BseMII	CTCAG	2 cut(s)	341, 732
BseNI	ACTGG	2 cut(s)	584, 846
BseRI	GAGGAG	1 cut(s)	927
BsgI	GTGCAG	1 cut(s)	138
BshFI	GGCC	4 cut(s)	185, 352, 623, 920
BshNI	GGYRCC	2 cut(s)	829, 855
BshVI	ATCGAT	1 cut(s)	48
BsiSI	CCGG	1 cut(s)	624
BslI	CCNNNNNNNGG	1 cut(s)	248
BsmAI	GTCTC	1 cut(s)	937
BsnI	GGCC	4 cut(s)	185, 352, 623, 920
Bsp143I	GATC	2 cut(s)	142, 475
BspACI	CCGC	1 cut(s)	597
BspANI	GGCC	4 cut(s)	185, 352, 623, 920
BspCNI	CTCAG	2 cut(s)	340, 731
BspDI	ATCGAT	1 cut(s)	48
BspLI	GGNNCC	5 cut(s)	7, 204, 262, 831, 857
BspMI	ACCTGC	1 cut(s)	628
BspT107I	GGYRCC	2 cut(s)	829, 855
BsrDI	GCAATG	2 cut(s)	649, 736
BsrFI	RCCGGY	1 cut(s)	623
BsrI	ACTGG	2 cut(s)	584, 846
BssAI	RCCGGY	1 cut(s)	623
BssECI	CCNNGG	1 cut(s)	567
BssMI	GATC	2 cut(s)	142, 475
BssT1I	CCWWGG	1 cut(s)	567
Bst2UI	CCWGG	2 cut(s)	63, 922
Bst4CI	ACNGT	3 cut(s)	122, 609, 908
Bst6I	CTCTTC	1 cut(s)	108
BstAPI	GCANNNNNTGC	1 cut(s)	862
BstC8I	GCNNGC	2 cut(s)	183, 499
BstDEI	CTNAG	5 cut(s)	327, 440, 680, 713, 718
BstF5I	GGATG	2 cut(s)	311, 577
BstHHI	GCGC	1 cut(s)	136
BstKTI	GATC	2 cut(s)	145, 478
BstMAI	GTCTC	1 cut(s)	937
BstMBI	GATC	2 cut(s)	142, 475
BstMWI	GCNNNNNNNGC	2 cut(s)	479, 862
BstNI	CCWGG	2 cut(s)	63, 922
BstNSI	RCATGY	1 cut(s)	750
BstSCI	CCNGG	2 cut(s)	61, 920
BstSFI	CTRYAG	1 cut(s)	969
Bsu15I	ATCGAT	1 cut(s)	48
BsuRI	GGCC	4 cut(s)	185, 352, 623, 920
BsuTUI	ATCGAT	1 cut(s)	48
BtsCI	GGATG	2 cut(s)	311, 577
BtsI	GCAGTG	1 cut(s)	860
BtsIMutI	CAGTG	1 cut(s)	860
BveI	ACCTGC	1 cut(s)	628
Cac8I	GCNNGC	2 cut(s)	183, 499
CfoI	GCGC	1 cut(s)	136
Cfr10I	RCCGGY	1 cut(s)	623
Cfr13I	GGNCC	2 cut(s)	260, 351
ClaI	ATCGAT	1 cut(s)	48
Csp6I	GTAC	6 cut(s)	118, 139, 406, 677, 787, 830
CviAII	CATG	4 cut(s)	274, 346, 619, 747
CviQI	GTAC	6 cut(s)	118, 139, 406, 677, 787, 830
DdeI	CTNAG	5 cut(s)	327, 440, 680, 713, 718
DpnI	GATC	2 cut(s)	144, 477
DpnII	GATC	2 cut(s)	142, 475
DraI	TTTAAA	1 cut(s)	382
EaeI	YGGCCR	1 cut(s)	621
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Eco130I	CCWWGG	1 cut(s)	567
Eco47I	GGWCC	1 cut(s)	260
EcoRII	CCWGG	2 cut(s)	61, 920
EcoT14I	CCWWGG	1 cut(s)	567
ErhI	CCWWGG	1 cut(s)	567
FaeI	CATG	4 cut(s)	277, 349, 622, 750
FatI	CATG	4 cut(s)	273, 345, 618, 746
FokI	GGATG	2 cut(s)	298, 584
FspBI	CTAG	2 cut(s)	420, 704
GlaI	GCGC	1 cut(s)	135
HaeIII	GGCC	4 cut(s)	185, 352, 623, 920
HapII	CCGG	1 cut(s)	624
HhaI	GCGC	1 cut(s)	136
Hin1II	CATG	4 cut(s)	277, 349, 622, 750
Hin6I	GCGC	1 cut(s)	134
HinP1I	GCGC	1 cut(s)	134
HindIII	AAGCTT	1 cut(s)	23
HinfI	GANTC	3 cut(s)	410, 444, 593
HpaII	CCGG	1 cut(s)	624
HphI	GGTGA	4 cut(s)	511, 587, 638, 926
Hpy166II	GTNNAC	3 cut(s)	84, 804, 847
Hpy188I	TCNGA	2 cut(s)	165, 330
Hpy188III	TCNNGA	2 cut(s)	887, 943
Hpy8I	GTNNAC	3 cut(s)	84, 804, 847
Hpy99I	CGWCG	2 cut(s)	533, 545
HpyAV	CCTTC	3 cut(s)	281, 446, 612
HpyCH4III	ACNGT	3 cut(s)	122, 609, 908
HpyCH4IV	ACGT	2 cut(s)	228, 543
HpyCH4V	TGCA	3 cut(s)	107, 155, 637
HpyF10VI	GCNNNNNNNGC	2 cut(s)	479, 862
HpyF3I	CTNAG	5 cut(s)	327, 440, 680, 713, 718
HpySE526I	ACGT	2 cut(s)	228, 543
Hsp92II	CATG	4 cut(s)	277, 349, 622, 750
HspAI	GCGC	1 cut(s)	134
KpnI	GGTACC	1 cut(s)	833
Kzo9I	GATC	2 cut(s)	142, 475
LmnI	GCTCC	2 cut(s)	392, 726
LweI	GCATC	1 cut(s)	40
MaeI	CTAG	2 cut(s)	420, 704
MaeII	ACGT	2 cut(s)	228, 543
MaeIII	GTNAC	2 cut(s)	307, 575
MalI	GATC	2 cut(s)	144, 477
MboI	GATC	2 cut(s)	142, 475
MboII	GAAGA	3 cut(s)	125, 235, 848
MluCI	AATT	6 cut(s)	37, 367, 660, 689, 925, 964
MlyI	GAGTC	2 cut(s)	419, 602
MseI	TTAA	5 cut(s)	11, 381, 561, 585, 663
MspI	CCGG	1 cut(s)	624
MspR9I	CCNGG	2 cut(s)	63, 922
MvaI	CCWGG	2 cut(s)	63, 922
MwoI	GCNNNNNNNGC	2 cut(s)	479, 862
NdeII	GATC	2 cut(s)	142, 475
NlaIII	CATG	4 cut(s)	277, 349, 622, 750
NlaIV	GGNNCC	5 cut(s)	7, 204, 262, 831, 857
NmuCI	GTSAC	2 cut(s)	307, 575
NspI	RCATGY	1 cut(s)	750
PcsI	WCGNNNNNNNCGW	2 cut(s)	126, 537
PfeI	GAWTC	1 cut(s)	444
PflMI	CCANNNNNTGG	1 cut(s)	248
PleI	GAGTC	2 cut(s)	418, 601
PpsI	GAGTC	2 cut(s)	418, 601
Psp1406I	AACGTT	1 cut(s)	228
Psp6I	CCWGG	2 cut(s)	61, 920
PspGI	CCWGG	2 cut(s)	61, 920
PspN4I	GGNNCC	5 cut(s)	7, 204, 262, 831, 857
PspPI	GGNCC	2 cut(s)	260, 351
RsaI	GTAC	6 cut(s)	119, 140, 407, 678, 788, 831
RsaNI	GTAC	6 cut(s)	118, 139, 406, 677, 787, 830
SaqAI	TTAA	5 cut(s)	11, 381, 561, 585, 663
Sau3AI	GATC	2 cut(s)	142, 475
Sau96I	GGNCC	2 cut(s)	260, 351
ScaI	AGTACT	1 cut(s)	678
SchI	GAGTC	2 cut(s)	419, 602
ScrFI	CCNGG	2 cut(s)	63, 922
SfaNI	GCATC	1 cut(s)	40
SfcI	CTRYAG	1 cut(s)	969
SinI	GGWCC	1 cut(s)	260
SmlI	CTYRAG	5 cut(s)	67, 449, 487, 887, 941
SmoI	CTYRAG	5 cut(s)	67, 449, 487, 887, 941
SpeI	ACTAGT	1 cut(s)	703
Sse9I	AATT	6 cut(s)	37, 367, 660, 689, 925, 964
SsiI	CCGC	1 cut(s)	597
SspMI	CTAG	2 cut(s)	420, 704
StyD4I	CCNGG	2 cut(s)	61, 920
StyI	CCWWGG	1 cut(s)	567
TaaI	ACNGT	3 cut(s)	122, 609, 908
TaiI	ACGT	2 cut(s)	231, 546
TaqI	TCGA	4 cut(s)	48, 100, 111, 757
TasI	AATT	6 cut(s)	37, 367, 660, 689, 925, 964
TatI	WGTACW	1 cut(s)	676
TfiI	GAWTC	1 cut(s)	444
Tru1I	TTAA	5 cut(s)	11, 381, 561, 585, 663
Tru9I	TTAA	5 cut(s)	11, 381, 561, 585, 663
TscAI	CASTG	1 cut(s)	867
TseFI	GTSAC	2 cut(s)	307, 575
Tsp45I	GTSAC	2 cut(s)	307, 575
TspDTI	ATGAA	3 cut(s)	252, 300, 607
TspGWI	ACGGA	1 cut(s)	831
TspRI	CASTG	1 cut(s)	867
Van91I	CCANNNNNTGG	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	260
XapI	RAATTY	2 cut(s)	925, 964
XceI	RCATGY	1 cut(s)	750
XspI	CTAG	2 cut(s)	420, 704
ZrmI	AGTACT	1 cut(s)	678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.