Rh1CG306400
HSP70 Family

Heat shock cognate 70 kDa

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0034293
Physical Location & Seq
Forward (+)
58043008 .. 58052020
9013 bp
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UTR
Exon/CDS
Intron
Rh1CG306400.1

Sequence Viewer

Length: 297 bp
ATGGCGAGCGAAGAAGAAGTTGCAGTAGGGATTGATCTGGGCACAACCTACTCGTGTGTTGCAGCATGGCAGCAGGACCATGTAGAAATCATAGCCAATGAACAAGGGAACAGAACCACTCCTTGTGTTGCTTTCACTGATACTGGCCACCTGATTGGTGACGCTGCCATTAGCCAGCTTATCAGAAATCCCAGAAACTCCATCTTTGATGCAAAACGGCTAATTGGCAGGAGATTCAGTGATGCTTCCGTTCAACAGTACCGATTTCTATCTAAATATTACCCGTGCAAAATTTGA

Protein Analysis

98

Amino Acids

10.94

Weight (kDa)

6.05

Isoelectric Point (pI)

36.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 8 - 87 2e-29 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0034293)

Species Orthologous Gene IDs
rosa_samantha Rh1CG306400 Rh1DG321200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 145
AcsI RAATTY 1 cut(s) 291
AfaI GTAC 1 cut(s) 260
AgsI TTSAA 1 cut(s) 254
AluBI AGCT 1 cut(s) 178
AluI AGCT 1 cut(s) 178
AoxI GGCC 1 cut(s) 145
ApeKI GCWGC 3 cut(s) 62, 70, 164
ApoI RAATTY 1 cut(s) 291
AspS9I GGNCC 1 cut(s) 76
AsuHPI GGTGA 1 cut(s) 170
AvaII GGWCC 1 cut(s) 76
BaeGI GKGCMC 1 cut(s) 44
BalI TGGCCA 1 cut(s) 147
BauI CACGAG 1 cut(s) 52
BbvI GCAGC 3 cut(s) 74, 82, 151
BccI CCATC 1 cut(s) 209
BceAI ACGGC 1 cut(s) 233
BisI GCNGC 3 cut(s) 63, 71, 165
BlsI GCNGC 3 cut(s) 64, 72, 166
Bme18I GGWCC 1 cut(s) 76
BmgT120I GGNCC 1 cut(s) 76
BmsI GCATC 2 cut(s) 199, 232
BsaBI GATNNNNATC 1 cut(s) 268
BsaXI ACNNNNNCTCC 2 cut(s) 223, 253
Bse1I ACTGG 1 cut(s) 148
Bse8I GATNNNNATC 1 cut(s) 268
BseJI GATNNNNATC 1 cut(s) 268
BseNI ACTGG 1 cut(s) 148
BseSI GKGCMC 1 cut(s) 44
BseXI GCAGC 3 cut(s) 74, 82, 151
BshFI GGCC 1 cut(s) 147
BsnI GGCC 1 cut(s) 147
Bsp1286I GDGCHC 1 cut(s) 44
Bsp143I GATC 1 cut(s) 34
BspANI GGCC 1 cut(s) 147
BsrI ACTGG 1 cut(s) 148
BssMI GATC 1 cut(s) 34
BssSI CACGAG 1 cut(s) 52
Bst2BI CACGAG 1 cut(s) 52
Bst4CI ACNGT 1 cut(s) 258
BstC8I GCNNGC 2 cut(s) 7, 176
BstKTI GATC 1 cut(s) 37
BstMBI GATC 1 cut(s) 34
BstSLI GKGCMC 1 cut(s) 44
BstV1I GCAGC 3 cut(s) 74, 82, 151
BstXI CCANNNNNNTGG 1 cut(s) 155
BsuRI GGCC 1 cut(s) 147
BtsIMutI CAGTG 2 cut(s) 135, 244
Cac8I GCNNGC 2 cut(s) 7, 176
Cfr13I GGNCC 1 cut(s) 76
CseI GACGC 1 cut(s) 170
Csp6I GTAC 1 cut(s) 259
CviAII CATG 2 cut(s) 66, 80
CviJI RGCY 5 cut(s) 95, 147, 174, 178, 220
CviKI_1 RGCY 5 cut(s) 95, 147, 174, 178, 220
CviQI GTAC 1 cut(s) 259
DpnI GATC 1 cut(s) 36
DpnII GATC 1 cut(s) 34
EaeI YGGCCR 1 cut(s) 145
Eco47I GGWCC 1 cut(s) 76
FaeI CATG 2 cut(s) 69, 83
FaiI YATR 3 cut(s) 67, 81, 92
FatI CATG 2 cut(s) 65, 79
Fnu4HI GCNGC 3 cut(s) 63, 71, 165
Fsp4HI GCNGC 3 cut(s) 63, 71, 165
GluI GCNGC 3 cut(s) 63, 71, 165
HaeIII GGCC 1 cut(s) 147
HgaI GACGC 1 cut(s) 170
Hin1II CATG 2 cut(s) 69, 83
HinfI GANTC 1 cut(s) 234
HphI GGTGA 1 cut(s) 170
Hpy188I TCNGA 1 cut(s) 185
HpyCH4III ACNGT 1 cut(s) 258
HpyCH4V TGCA 4 cut(s) 23, 62, 212, 288
Hsp92II CATG 2 cut(s) 69, 83
Kzo9I GATC 1 cut(s) 34
LpnPI CCDG 7 cut(s) 23, 59, 129, 164, 188, 205, 214
Lsp1109I GCAGC 3 cut(s) 74, 82, 151
LweI GCATC 2 cut(s) 199, 232
MaeIII GTNAC 1 cut(s) 158
MalI GATC 1 cut(s) 36
MboI GATC 1 cut(s) 34
MboII GAAGA 2 cut(s) 23, 26
MhlI GDGCHC 1 cut(s) 44
MlsI TGGCCA 1 cut(s) 147
MluCI AATT 2 cut(s) 222, 291
MluNI TGGCCA 1 cut(s) 147
Mox20I TGGCCA 1 cut(s) 147
MscI TGGCCA 1 cut(s) 147
Msp20I TGGCCA 1 cut(s) 147
NdeII GATC 1 cut(s) 34
NlaIII CATG 2 cut(s) 69, 83
NmuCI GTSAC 1 cut(s) 158
PfeI GAWTC 1 cut(s) 234
PkrI GCNGC 3 cut(s) 64, 72, 166
PspPI GGNCC 1 cut(s) 76
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
SatI GCNGC 3 cut(s) 63, 71, 165
Sau3AI GATC 1 cut(s) 34
Sau96I GGNCC 1 cut(s) 76
SduI GDGCHC 1 cut(s) 44
SetI ASST 3 cut(s) 50, 153, 180
SfaNI GCATC 2 cut(s) 199, 232
SinI GGWCC 1 cut(s) 76
Sse9I AATT 2 cut(s) 222, 291
SspI AATATT 1 cut(s) 278
TaaI ACNGT 1 cut(s) 258
TasI AATT 2 cut(s) 222, 291
TfiI GAWTC 1 cut(s) 234
TscAI CASTG 2 cut(s) 142, 244
TseFI GTSAC 1 cut(s) 158
TseI GCWGC 3 cut(s) 62, 70, 164
Tsp45I GTSAC 1 cut(s) 158
TspDTI ATGAA 1 cut(s) 114
TspGWI ACGGA 1 cut(s) 238
TspRI CASTG 2 cut(s) 142, 244
VpaK11BI GGWCC 1 cut(s) 76
XapI RAATTY 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.