Rh1DG321200
HSP70 Family

Belongs to the heat shock protein 70 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0034293
Physical Location & Seq
Forward (+)
54707268 .. 54707603
336 bp
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UTR
Exon/CDS
Intron
Rh1DG321200.1

Sequence Viewer

Length: 336 bp
ATGGCGAGCGAAGAAGAAGTTGCAGTAGGGATTGATCTGGGCACAACCTACTCGTGTGTTGCAGCATGGCAGCAGGACCATGTAGAAATCATAGCCAATGAACAAGGGAACAGAACCACTCCTTGTGTTGCTTTCACTGATACTGGCCACCTGATTGGTGACGCTGCCATTAGCCAGCTTATCAGAAATCCCAGAAACTCCATCTTTGGTAGTTTTGCTACCTCTCATTTTCTCTTTACATGCATGTCCTTTTTTTTTTTTTTGTCTATCTCTTCTAGGGTAAAACTGAGAGAGCTTTATGTTTCTCTGGTATATTTGGTGAGGTTGAAATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

111

Amino Acids

12.36

Weight (kDa)

5.83

Isoelectric Point (pI)

33.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 8 - 69 2.4e-20 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0034293)

Species Orthologous Gene IDs
rosa_samantha Rh1CG306400 Rh1DG321200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 145
AgsI TTSAA 1 cut(s) 328
AluBI AGCT 2 cut(s) 178, 295
AluI AGCT 2 cut(s) 178, 295
AoxI GGCC 1 cut(s) 145
ApeKI GCWGC 3 cut(s) 62, 70, 164
AspS9I GGNCC 1 cut(s) 76
AsuHPI GGTGA 2 cut(s) 170, 331
AvaII GGWCC 1 cut(s) 76
BaeGI GKGCMC 1 cut(s) 44
BalI TGGCCA 1 cut(s) 147
BauI CACGAG 1 cut(s) 52
BbvI GCAGC 3 cut(s) 74, 82, 151
BccI CCATC 1 cut(s) 209
BfaI CTAG 1 cut(s) 276
BisI GCNGC 3 cut(s) 63, 71, 165
BlsI GCNGC 3 cut(s) 64, 72, 166
Bme18I GGWCC 1 cut(s) 76
BmgT120I GGNCC 1 cut(s) 76
Bse1I ACTGG 1 cut(s) 148
BseMII CTCAG 1 cut(s) 278
BseNI ACTGG 1 cut(s) 148
BseSI GKGCMC 1 cut(s) 44
BseXI GCAGC 3 cut(s) 74, 82, 151
BshFI GGCC 1 cut(s) 147
BsnI GGCC 1 cut(s) 147
Bsp1286I GDGCHC 1 cut(s) 44
Bsp143I GATC 1 cut(s) 34
BspANI GGCC 1 cut(s) 147
BspCNI CTCAG 1 cut(s) 279
BsrI ACTGG 1 cut(s) 148
BssMI GATC 1 cut(s) 34
BssSI CACGAG 1 cut(s) 52
Bst2BI CACGAG 1 cut(s) 52
Bst6I CTCTTC 1 cut(s) 277
BstC8I GCNNGC 2 cut(s) 7, 176
BstDEI CTNAG 1 cut(s) 287
BstKTI GATC 1 cut(s) 37
BstMBI GATC 1 cut(s) 34
BstNSI RCATGY 2 cut(s) 243, 247
BstSLI GKGCMC 1 cut(s) 44
BstV1I GCAGC 3 cut(s) 74, 82, 151
BstXI CCANNNNNNTGG 1 cut(s) 155
BsuRI GGCC 1 cut(s) 147
BtsIMutI CAGTG 1 cut(s) 135
Cac8I GCNNGC 2 cut(s) 7, 176
Cfr13I GGNCC 1 cut(s) 76
CseI GACGC 1 cut(s) 170
CviAII CATG 4 cut(s) 66, 80, 240, 244
CviJI RGCY 5 cut(s) 95, 147, 174, 178, 295
CviKI_1 RGCY 5 cut(s) 95, 147, 174, 178, 295
DdeI CTNAG 1 cut(s) 287
DpnI GATC 1 cut(s) 36
DpnII GATC 1 cut(s) 34
EaeI YGGCCR 1 cut(s) 145
Eam1104I CTCTTC 1 cut(s) 277
EarI CTCTTC 1 cut(s) 277
Eco47I GGWCC 1 cut(s) 76
EcoT22I ATGCAT 1 cut(s) 245
FaeI CATG 4 cut(s) 69, 83, 243, 247
FaiI YATR 8 cut(s) 67, 81, 92, 241, 245, 300, 313, 334
FatI CATG 4 cut(s) 65, 79, 239, 243
Fnu4HI GCNGC 3 cut(s) 63, 71, 165
Fsp4HI GCNGC 3 cut(s) 63, 71, 165
FspBI CTAG 1 cut(s) 276
GluI GCNGC 3 cut(s) 63, 71, 165
HaeIII GGCC 1 cut(s) 147
HgaI GACGC 1 cut(s) 170
Hin1II CATG 4 cut(s) 69, 83, 243, 247
HphI GGTGA 2 cut(s) 170, 331
Hpy188I TCNGA 1 cut(s) 185
HpyCH4V TGCA 3 cut(s) 23, 62, 243
HpyF3I CTNAG 1 cut(s) 287
Hsp92II CATG 4 cut(s) 69, 83, 243, 247
Kzo9I GATC 1 cut(s) 34
LpnPI CCDG 7 cut(s) 23, 59, 129, 164, 188, 205, 293
Lsp1109I GCAGC 3 cut(s) 74, 82, 151
MaeI CTAG 1 cut(s) 276
MaeIII GTNAC 1 cut(s) 158
MalI GATC 1 cut(s) 36
MboI GATC 1 cut(s) 34
MboII GAAGA 3 cut(s) 23, 26, 264
MhlI GDGCHC 1 cut(s) 44
MlsI TGGCCA 1 cut(s) 147
MluNI TGGCCA 1 cut(s) 147
MnlI CCTC 2 cut(s) 232, 315
Mox20I TGGCCA 1 cut(s) 147
Mph1103I ATGCAT 1 cut(s) 245
MscI TGGCCA 1 cut(s) 147
Msp20I TGGCCA 1 cut(s) 147
NdeII GATC 1 cut(s) 34
NlaIII CATG 4 cut(s) 69, 83, 243, 247
NmuCI GTSAC 1 cut(s) 158
NsiI ATGCAT 1 cut(s) 245
NspI RCATGY 2 cut(s) 243, 247
PkrI GCNGC 3 cut(s) 64, 72, 166
PspPI GGNCC 1 cut(s) 76
SatI GCNGC 3 cut(s) 63, 71, 165
Sau3AI GATC 1 cut(s) 34
Sau96I GGNCC 1 cut(s) 76
SduI GDGCHC 1 cut(s) 44
SetI ASST 6 cut(s) 50, 153, 180, 224, 297, 326
SinI GGWCC 1 cut(s) 76
SspMI CTAG 1 cut(s) 276
TscAI CASTG 1 cut(s) 142
TseFI GTSAC 1 cut(s) 158
TseI GCWGC 3 cut(s) 62, 70, 164
Tsp45I GTSAC 1 cut(s) 158
TspDTI ATGAA 1 cut(s) 114
TspRI CASTG 1 cut(s) 142
VpaK11BI GGWCC 1 cut(s) 76
XceI RCATGY 2 cut(s) 243, 247
XspI CTAG 1 cut(s) 276
Zsp2I ATGCAT 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.