Rh1CG352000

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0015356
Physical Location & Seq
Forward (+)
62786613 .. 62790413
3801 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG352000.1

Sequence Viewer

Length: 1440 bp
ATGATGCTTTTGACAATGGCTGTTTCACTCAAAACCTTCAAGCCAACCTGCAGCAATGGCATTTGCAACAAGGCCTCTACCTCACAGATTGCTTTCTTCTACCTCTCTCTATACACCATTGCTTTCGGTTCCGGGGGAACAAAGCCTAATATATCCACCTTCGGGGCAGACCAGTTTGATGATTTTAACCCCCACGAGAAAAGGATCAAGGCCTCATTCTTCAACTGGTGGATGTTCAGCTCTTTCTTAGGTGCTCTGATTGCAACCCTTGGCCTTGTCTACATCCAAGAAAACGTGGGATGGGGGTTAGGGTATGGTATCCCCACATTTGGTCTAGTAGTATCCTTATTAATCTTCTATATTGGGACACCAATGTATAGGCACAAAGTTAGCAAGAACAAGAGCCCAGCTAGGGACATCATCCAAATTCCCGTTGCTGCCTTTAGAAATCGGAAGCTTCCCCTCCCAAATGATCTGTCTGAGCTCCATGAATATGAGCCACAACATTACATTGACAGCGGAAAACGCCAGGTCTATCACACCCCAACTTTCAGGTTCTTGGACAAGGCTGCTATAAAAAATGCCAACACGGATGCCTCATCAAGACCACCATGCACAGTGACTCAAGTTGAAGGAACAAAGCTGATTTTGGGAATGGGGATGATATGGTTTGTGACCCTAATTCCAAGCACCATTTGGGCACAAATCAACACTCTCTTTGTCAAGCAAGGCACCACACTAGACAGAAGCTTGGGCCCGAATCACTTCCATATCCCAGCAGCTTCTCTAGGGAGCTTCGTCACCCTCTCCATGCTTCTCTCCGTGCCCATGTATGACCGTTACTTCGTGCCCTTCATGCGTGGCAGAACCGGAAACCCTAGGGGAATCACACTCCTCCAAAGGCTTGGGATTGGATTCGTCATCCAAGTCATAGCCATTGCAATTGCCTATGCGGTTGAGGTTCGTCGCATGCGTGTCATTCGAGTCCACCATGTTTCGGGGCCTAAAGAGGTCGTCCCCATGAGCATATTCTGGTTACTCCCTCAGTACACACTACTTGGGGTAGCCGATGTGTTCAACGCCATTGGATTGCTGGAGTTTTTCTACGATCAGTCCCCAGAGGACATGCAGAGTCTCGGCACAACTTTCTTCACAAGTGGGATTGGTATTGGTAACTTCTTGAACAGCTTTTTAGTGACGATGGTGGATAAAATTACGGGGAGGAATGGGGGTAAAAGTTGGATTGGGAATAACTTGAATGACTGTCACTTGGATTATTACTACGGATTTCTTCTGGTCATATCTTCCCTAAACCTGGTGGCGTTTTTGTGGGCTTCAAGCAAATATATATACAAGAAGGAACCTGTATACGTGAAGGAAGGGTGCATTGATTTGATTGAAGCCAAAGCAATGACCACACCTCTAGGAATATGTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

479

Amino Acids

53.52

Weight (kDa)

9.29

Isoelectric Point (pI)

32.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 2 - 415 3.9e-101 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015356)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40460
fragaria_vesca FvH4_7g25560
malus_domestica MD07G1230600.v1.1
prunus_persica Prupe.2G260700_v2.0.a1 Prupe.2G260700_v2.0.a1
pyrus_communis pycom07g20820
rosa_chinensis RchiOBHm_Chr1g0371561
rosa_laevigata RLG00000026952
rosa_multiflora Rmu_sc0000809.1_g000010
rosa_roxburghii Rroxscaffold_4G00285550
rosa_rugosa Rorug01G0365400
rosa_samantha Rh1AG375300 Rh1BG338800 Rh1CG352000 Rh1DG369900
rosa_wichuraiana Rw1G033020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 56
AccB1I GGYRCC 1 cut(s) 731
AccI GTMKAC 2 cut(s) 279, 1368
AciI CCGC 2 cut(s) 519, 953
AclWI GGATC 1 cut(s) 212
AcsI RAATTY 1 cut(s) 426
AfaI GTAC 1 cut(s) 1049
AfiI CCNNNNNNNGG 5 cut(s) 162, 329, 412, 997, 1315
AgsI TTSAA 8 cut(s) 40, 223, 632, 1078, 1183, 1258, 1338, 1400
AjnI CCWGG 2 cut(s) 528, 1314
AluBI AGCT 9 cut(s) 240, 410, 457, 484, 643, 750, 782, 795, 1188
AluI AGCT 9 cut(s) 240, 410, 457, 484, 643, 750, 782, 795, 1188
Alw21I GWGCWC 2 cut(s) 256, 486
Alw26I GTCTC 1 cut(s) 1139
AlwI GGATC 1 cut(s) 212
AoxI GGCC 5 cut(s) 72, 210, 271, 754, 1001
ApaI GGGCCC 1 cut(s) 758
ApeKI GCWGC 4 cut(s) 51, 437, 569, 779
ApoI RAATTY 1 cut(s) 426
ArsI GACNNNNNNTTYG 4 cut(s) 461, 493, 827, 859
AseI ATTAAT 1 cut(s) 350
Asp700I GAANNNNTTC 1 cut(s) 764
AspA2I CCTAGG 1 cut(s) 878
AspS9I GGNCC 3 cut(s) 754, 755, 1001
AsuC2I CCSGG 1 cut(s) 133
AsuHPI GGTGA 1 cut(s) 793
AvrII CCTAGG 1 cut(s) 878
BaeGI GKGCMC 4 cut(s) 703, 758, 828, 852
BanI GGYRCC 1 cut(s) 731
BanII GRGCYC 3 cut(s) 407, 486, 758
BauI CACGAG 1 cut(s) 194
Bbv12I GWGCWC 2 cut(s) 256, 486
BbvI GCAGC 4 cut(s) 63, 424, 556, 791
BccI CCATC 2 cut(s) 294, 1195
BciT130I CCWGG 2 cut(s) 530, 1316
BciVI GTATCC 2 cut(s) 329, 352
BcnI CCSGG 1 cut(s) 133
BcoDI GTCTC 1 cut(s) 1139
BfaI CTAG 6 cut(s) 335, 411, 740, 788, 879, 1424
BfmI CTRYAG 1 cut(s) 49
BfuAI ACCTGC 1 cut(s) 56
BfuI GTATCC 2 cut(s) 329, 352
BisI GCNGC 4 cut(s) 52, 438, 570, 780
BlnI CCTAGG 1 cut(s) 878
BlsI GCNGC 4 cut(s) 53, 439, 571, 781
Bme1390I CCNGG 3 cut(s) 133, 530, 1316
BmgT120I GGNCC 3 cut(s) 754, 755, 1001
BmiI GGNNCC 5 cut(s) 130, 733, 756, 1002, 1362
BmrFI CCNGG 3 cut(s) 133, 530, 1316
BmsI GCATC 1 cut(s) 583
BpmI CTGGAG 1 cut(s) 1115
BpuEI CTTGAG 1 cut(s) 609
BpuMI CCSGG 1 cut(s) 133
BsaAI YACGTR 1 cut(s) 1372
BsaJI CCNNGG 3 cut(s) 132, 268, 878
BsaWI WCCGGW 1 cut(s) 869
Bsc4I CCNNNNNNNGG 5 cut(s) 162, 329, 412, 997, 1315
Bse1I ACTGG 2 cut(s) 172, 230
Bse3DI GCAATG 4 cut(s) 61, 117, 936, 1416
BseBI CCWGG 2 cut(s) 530, 1316
BseDI CCNNGG 3 cut(s) 132, 268, 878
BseGI GGATG 7 cut(s) 237, 282, 305, 420, 598, 666, 921
BseLI CCNNNNNNNGG 5 cut(s) 162, 329, 412, 997, 1315
BseMI GCAATG 4 cut(s) 61, 117, 936, 1416
BseMII CTCAG 2 cut(s) 471, 1058
BseNI ACTGG 2 cut(s) 172, 230
BseRI GAGGAG 1 cut(s) 884
BseSI GKGCMC 4 cut(s) 703, 758, 828, 852
BseXI GCAGC 4 cut(s) 63, 424, 556, 791
BseYI CCCAGC 2 cut(s) 406, 775
BshFI GGCC 5 cut(s) 74, 212, 273, 756, 1003
BshNI GGYRCC 1 cut(s) 731
BsiHKAI GWGCWC 2 cut(s) 256, 486
BsiSI CCGG 2 cut(s) 132, 870
BslFI GGGAC 4 cut(s) 379, 428, 1001, 1099
BslI CCNNNNNNNGG 5 cut(s) 162, 329, 412, 997, 1315
BsmAI GTCTC 1 cut(s) 1139
BsmFI GGGAC 4 cut(s) 379, 428, 1001, 1099
BsnI GGCC 5 cut(s) 74, 212, 273, 756, 1003
Bsp120I GGGCCC 1 cut(s) 754
Bsp1286I GDGCHC 7 cut(s) 256, 407, 486, 703, 758, 828, 852
Bsp143I GATC 3 cut(s) 204, 472, 1108
BspACI CCGC 2 cut(s) 519, 953
BspANI GGCC 5 cut(s) 74, 212, 273, 756, 1003
BspCNI CTCAG 2 cut(s) 472, 1057
BspLI GGNNCC 5 cut(s) 130, 733, 756, 1002, 1362
BspMAI CTGCAG 1 cut(s) 53
BspMI ACCTGC 1 cut(s) 56
BspPI GGATC 1 cut(s) 212
BspT107I GGYRCC 1 cut(s) 731
BsrDI GCAATG 4 cut(s) 61, 117, 936, 1416
BsrI ACTGG 2 cut(s) 172, 230
BssECI CCNNGG 3 cut(s) 132, 268, 878
BssMI GATC 3 cut(s) 204, 472, 1108
BssNAI GTATAC 1 cut(s) 1369
BssSI CACGAG 1 cut(s) 194
BssT1I CCWWGG 2 cut(s) 268, 878
Bst1107I GTATAC 1 cut(s) 1369
Bst2BI CACGAG 1 cut(s) 194
Bst2UI CCWGG 2 cut(s) 530, 1316
Bst4CI ACNGT 3 cut(s) 619, 839, 1265
BstBAI YACGTR 1 cut(s) 1372
BstC8I GCNNGC 1 cut(s) 971
BstDEI CTNAG 3 cut(s) 247, 480, 1044
BstF5I GGATG 7 cut(s) 237, 282, 305, 420, 598, 666, 921
BstKTI GATC 3 cut(s) 207, 475, 1111
BstMAI GTCTC 1 cut(s) 1139
BstMBI GATC 3 cut(s) 204, 472, 1108
BstMWI GCNNNNNNNGC 4 cut(s) 57, 260, 525, 856
BstNI CCWGG 2 cut(s) 530, 1316
BstNSI RCATGY 2 cut(s) 973, 1129
BstSCI CCNGG 3 cut(s) 131, 528, 1314
BstSFI CTRYAG 1 cut(s) 49
BstSLI GKGCMC 4 cut(s) 703, 758, 828, 852
BstV1I GCAGC 4 cut(s) 63, 424, 556, 791
BstXI CCANNNNNNTGG 1 cut(s) 905
BstZ17I GTATAC 1 cut(s) 1369
BsuI GTATCC 2 cut(s) 329, 352
BsuRI GGCC 5 cut(s) 74, 212, 273, 756, 1003
BtsCI GGATG 7 cut(s) 237, 282, 305, 420, 598, 666, 921
BtsIMutI CAGTG 1 cut(s) 624
BveI ACCTGC 1 cut(s) 56
Cac8I GCNNGC 1 cut(s) 971
Cfr13I GGNCC 3 cut(s) 754, 755, 1001
CsiI ACCWGGT 1 cut(s) 1314
Csp6I GTAC 1 cut(s) 1048
CviAII CATG 9 cut(s) 488, 612, 811, 829, 856, 970, 992, 1021, 1126
CviQI GTAC 1 cut(s) 1048
DdeI CTNAG 3 cut(s) 247, 480, 1044
DpnI GATC 3 cut(s) 206, 474, 1110
DpnII GATC 3 cut(s) 204, 472, 1108
Ecl136II GAGCTC 1 cut(s) 484
Eco130I CCWWGG 2 cut(s) 268, 878
Eco147I AGGCCT 2 cut(s) 74, 212
Eco24I GRGCYC 3 cut(s) 407, 486, 758
Eco53kI GAGCTC 1 cut(s) 484
EcoICRI GAGCTC 1 cut(s) 484
EcoO109I RGGNCCY 1 cut(s) 1001
EcoRII CCWGG 2 cut(s) 528, 1314
EcoT14I CCWWGG 2 cut(s) 268, 878
EcoT38I GRGCYC 3 cut(s) 407, 486, 758
ErhI CCWWGG 2 cut(s) 268, 878
FaeI CATG 9 cut(s) 491, 615, 814, 832, 859, 973, 995, 1024, 1129
FaqI GGGAC 4 cut(s) 379, 428, 1001, 1099
FatI CATG 9 cut(s) 487, 611, 810, 828, 855, 969, 991, 1020, 1125
FblI GTMKAC 2 cut(s) 279, 1368
Fnu4HI GCNGC 4 cut(s) 52, 438, 570, 780
FokI GGATG 7 cut(s) 244, 269, 312, 407, 605, 673, 908
FriOI GRGCYC 3 cut(s) 407, 486, 758
Fsp4HI GCNGC 4 cut(s) 52, 438, 570, 780
FspBI CTAG 6 cut(s) 335, 411, 740, 788, 879, 1424
GluI GCNGC 4 cut(s) 52, 438, 570, 780
GsaI CCCAGC 2 cut(s) 410, 779
GsuI CTGGAG 1 cut(s) 1115
HaeIII GGCC 5 cut(s) 74, 212, 273, 756, 1003
HapII CCGG 2 cut(s) 132, 870
Hin1II CATG 9 cut(s) 491, 615, 814, 832, 859, 973, 995, 1024, 1129
HindIII AAGCTT 2 cut(s) 455, 748
HinfI GANTC 6 cut(s) 622, 760, 885, 915, 984, 1132
HpaII CCGG 2 cut(s) 132, 870
HphI GGTGA 1 cut(s) 793
Hpy166II GTNNAC 4 cut(s) 280, 988, 1050, 1369
Hpy188I TCNGA 3 cut(s) 258, 453, 481
Hpy188III TCNNGA 2 cut(s) 603, 1180
Hpy8I GTNNAC 4 cut(s) 280, 988, 1050, 1369
Hpy99I CGWCG 1 cut(s) 969
HpyAV CCTTC 7 cut(s) 46, 169, 626, 862, 1351, 1369, 1373
HpyCH4III ACNGT 3 cut(s) 619, 839, 1265
HpyCH4IV ACGT 2 cut(s) 294, 1371
HpyCH4V TGCA 7 cut(s) 51, 66, 263, 615, 941, 1129, 1386
HpyF10VI GCNNNNNNNGC 4 cut(s) 57, 260, 525, 856
HpyF3I CTNAG 3 cut(s) 247, 480, 1044
HpySE526I ACGT 2 cut(s) 294, 1371
Hsp92II CATG 9 cut(s) 491, 615, 814, 832, 859, 973, 995, 1024, 1129
Kzo9I GATC 3 cut(s) 204, 472, 1108
LmnI GCTCC 2 cut(s) 489, 792
Lsp1109I GCAGC 4 cut(s) 63, 424, 556, 791
LweI GCATC 1 cut(s) 583
MabI ACCWGGT 1 cut(s) 1314
MaeI CTAG 6 cut(s) 335, 411, 740, 788, 879, 1424
MaeII ACGT 2 cut(s) 294, 1371
MaeIII GTNAC 8 cut(s) 619, 673, 799, 839, 1035, 1172, 1195, 1265
MalI GATC 3 cut(s) 206, 474, 1110
MboI GATC 3 cut(s) 204, 472, 1108
MboII GAAGA 6 cut(s) 88, 211, 346, 1141, 1283, 1296
MfeI CAATTG 1 cut(s) 942
MhlI GDGCHC 7 cut(s) 256, 407, 486, 703, 758, 828, 852
MluCI AATT 5 cut(s) 426, 681, 942, 1212, 1435
MlyI GAGTC 3 cut(s) 616, 993, 1141
MmeI TCCRAC 1 cut(s) 1220
MroXI GAANNNNTTC 1 cut(s) 764
MseI TTAA 3 cut(s) 186, 350, 1438
MslI CAYNNNNRTG 1 cut(s) 492
MspA1I CMGCKG 1 cut(s) 519
MspI CCGG 2 cut(s) 132, 870
MspR9I CCNGG 3 cut(s) 133, 530, 1316
MunI CAATTG 1 cut(s) 942
MvaI CCWGG 2 cut(s) 530, 1316
MwoI GCNNNNNNNGC 4 cut(s) 57, 260, 525, 856
NciI CCSGG 1 cut(s) 133
NdeII GATC 3 cut(s) 204, 472, 1108
NlaIII CATG 9 cut(s) 491, 615, 814, 832, 859, 973, 995, 1024, 1129
NlaIV GGNNCC 5 cut(s) 130, 733, 756, 1002, 1362
NmeAIII GCCGAG 1 cut(s) 1116
NmuCI GTSAC 5 cut(s) 619, 673, 799, 1195, 1265
NspI RCATGY 2 cut(s) 973, 1129
PaeI GCATGC 1 cut(s) 973
PceI AGGCCT 2 cut(s) 74, 212
PcsI WCGNNNNNNNCGW 1 cut(s) 970
PdmI GAANNNNTTC 1 cut(s) 764
PfeI GAWTC 3 cut(s) 760, 885, 915
PkrI GCNGC 4 cut(s) 53, 439, 571, 781
PleI GAGTC 3 cut(s) 616, 992, 1140
PpsI GAGTC 3 cut(s) 616, 992, 1140
Ppu21I YACGTR 1 cut(s) 1372
PshBI ATTAAT 1 cut(s) 350
Psp124BI GAGCTC 1 cut(s) 486
Psp6I CCWGG 2 cut(s) 528, 1314
PspFI CCCAGC 2 cut(s) 406, 775
PspGI CCWGG 2 cut(s) 528, 1314
PspN4I GGNNCC 5 cut(s) 130, 733, 756, 1002, 1362
PspOMI GGGCCC 1 cut(s) 754
PspPI GGNCC 3 cut(s) 754, 755, 1001
PstI CTGCAG 1 cut(s) 53
RsaI GTAC 1 cut(s) 1049
RsaNI GTAC 1 cut(s) 1048
RseI CAYNNNNRTG 1 cut(s) 492
SacI GAGCTC 1 cut(s) 486
SaqAI TTAA 3 cut(s) 186, 350, 1438
SatI GCNGC 4 cut(s) 52, 438, 570, 780
Sau3AI GATC 3 cut(s) 204, 472, 1108
Sau96I GGNCC 3 cut(s) 754, 755, 1001
SchI GAGTC 3 cut(s) 616, 993, 1141
ScrFI CCNGG 3 cut(s) 133, 530, 1316
SduI GDGCHC 7 cut(s) 256, 407, 486, 703, 758, 828, 852
SexAI ACCWGGT 1 cut(s) 1314
SfaNI GCATC 1 cut(s) 583
SfcI CTRYAG 1 cut(s) 49
SmiMI CAYNNNNRTG 1 cut(s) 492
SmlI CTYRAG 1 cut(s) 624
SmoI CTYRAG 1 cut(s) 624
SphI GCATGC 1 cut(s) 973
Sse9I AATT 5 cut(s) 426, 681, 942, 1212, 1435
SseBI AGGCCT 2 cut(s) 74, 212
SsiI CCGC 2 cut(s) 519, 953
SspMI CTAG 6 cut(s) 335, 411, 740, 788, 879, 1424
SstI GAGCTC 1 cut(s) 486
StuI AGGCCT 2 cut(s) 74, 212
StyD4I CCNGG 3 cut(s) 131, 528, 1314
StyI CCWWGG 2 cut(s) 268, 878
TaaI ACNGT 3 cut(s) 619, 839, 1265
TaiI ACGT 2 cut(s) 297, 1374
TaqI TCGA 1 cut(s) 982
TasI AATT 5 cut(s) 426, 681, 942, 1212, 1435
TatI WGTACW 1 cut(s) 1047
TfiI GAWTC 3 cut(s) 760, 885, 915
Tru1I TTAA 3 cut(s) 186, 350, 1438
Tru9I TTAA 3 cut(s) 186, 350, 1438
TscAI CASTG 1 cut(s) 624
TseFI GTSAC 5 cut(s) 619, 673, 799, 1195, 1265
TseI GCWGC 4 cut(s) 51, 437, 569, 779
Tsp45I GTSAC 5 cut(s) 619, 673, 799, 1195, 1265
TspDTI ATGAA 2 cut(s) 504, 844
TspGWI ACGGA 3 cut(s) 605, 811, 1299
TspRI CASTG 1 cut(s) 624
VspI ATTAAT 1 cut(s) 350
XapI RAATTY 1 cut(s) 426
XceI RCATGY 2 cut(s) 973, 1129
XcmI CCANNNNNNNNNTGG 2 cut(s) 693, 1090
XmaJI CCTAGG 1 cut(s) 878
XmiI GTMKAC 2 cut(s) 279, 1368
XmnI GAANNNNTTC 1 cut(s) 764
XspI CTAG 6 cut(s) 335, 411, 740, 788, 879, 1424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.