Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0034311

Physical Location & Seq

Genomic Coordinates Reverse (-)

66713427 .. 66714361

Gene Structure 935 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG400900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGAATAATGTGACTCCTGTTTTGCAGCCATATCTGGTAGACTGGTTAAAGTCCATGGTTGCCAGTCAAAGAACTGCTTATGTAGTTGATCCTAAATTGCCAGAGAAGCCATCTTCAAAAGAACTCAAAAGGGTTCTTCTGGTTGCTCTTCGTTGCGCTGATCCTGATTTAGAAGATAGGCCTAGAATGGGAGAAGTTCTTCACATGCTTGAGCCCCGCGACTTGCTAATGCTCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

79

Amino Acids

9.09

Weight (kDa)

5.76

Isoelectric Point (pI)

31.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0034311)

Species	Orthologous Gene IDs
rosa_samantha	Rh1CG400900 Rh1DG418500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	39
AccII	CGCG	1 cut(s)	219
AciI	CCGC	1 cut(s)	217
AclWI	GGATC	2 cut(s)	83, 155
AfiI	CCNNNNNNNGG	1 cut(s)	188
AgsI	TTSAA	1 cut(s)	117
AlwI	GGATC	2 cut(s)	83, 155
AoxI	GGCC	1 cut(s)	179
ApeKI	GCWGC	1 cut(s)	25
ArsI	GACNNNNNNTTYG	1 cut(s)	36
Asp700I	GAANNNNTTC	1 cut(s)	198
AspLEI	GCGC	1 cut(s)	158
BanII	GRGCYC	1 cut(s)	216
BbvI	GCAGC	1 cut(s)	37
BccI	CCATC	1 cut(s)	118
BfaI	CTAG	1 cut(s)	183
BisI	GCNGC	1 cut(s)	26
BlsI	GCNGC	1 cut(s)	27
BpuEI	CTTGAG	1 cut(s)	230
BsaJI	CCNNGG	1 cut(s)	54
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
Bse1I	ACTGG	2 cut(s)	47, 63
BseDI	CCNNGG	1 cut(s)	54
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseNI	ACTGG	2 cut(s)	47, 63
BseXI	GCAGC	1 cut(s)	37
Bsh1236I	CGCG	1 cut(s)	219
BshFI	GGCC	1 cut(s)	181
BslI	CCNNNNNNNGG	1 cut(s)	188
BsnI	GGCC	1 cut(s)	181
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp143I	GATC	2 cut(s)	88, 160
Bsp19I	CCATGG	1 cut(s)	54
BspACI	CCGC	1 cut(s)	217
BspANI	GGCC	1 cut(s)	181
BspFNI	CGCG	1 cut(s)	219
BspPI	GGATC	2 cut(s)	83, 155
BspQI	GCTCTTC	1 cut(s)	153
BsrI	ACTGG	2 cut(s)	47, 63
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	2 cut(s)	88, 160
BssT1I	CCWWGG	1 cut(s)	54
Bst6I	CTCTTC	1 cut(s)	153
BstDSI	CCRYGG	1 cut(s)	54
BstFNI	CGCG	1 cut(s)	219
BstHHI	GCGC	1 cut(s)	158
BstKTI	GATC	2 cut(s)	91, 163
BstMBI	GATC	2 cut(s)	88, 160
BstMWI	GCNNNNNNNGC	1 cut(s)	106
BstNSI	RCATGY	1 cut(s)	208
BstUI	CGCG	1 cut(s)	219
BstV1I	GCAGC	1 cut(s)	37
BsuRI	GGCC	1 cut(s)	181
BtgI	CCRYGG	1 cut(s)	54
CfoI	GCGC	1 cut(s)	158
CviAII	CATG	2 cut(s)	55, 205
CviJI	RGCY	4 cut(s)	28, 109, 181, 214
CviKI_1	RGCY	4 cut(s)	28, 109, 181, 214
DpnI	GATC	2 cut(s)	90, 162
DpnII	GATC	2 cut(s)	88, 160
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Eco130I	CCWWGG	1 cut(s)	54
Eco147I	AGGCCT	1 cut(s)	181
Eco24I	GRGCYC	1 cut(s)	216
EcoT14I	CCWWGG	1 cut(s)	54
EcoT38I	GRGCYC	1 cut(s)	216
ErhI	CCWWGG	1 cut(s)	54
FaeI	CATG	2 cut(s)	58, 208
FaiI	YATR	4 cut(s)	31, 56, 81, 206
FalI	AAGNNNNNCTT	2 cut(s)	61, 93
FatI	CATG	2 cut(s)	54, 204
FauI	CCCGC	1 cut(s)	224
FblI	GTMKAC	1 cut(s)	39
Fnu4HI	GCNGC	1 cut(s)	26
FriOI	GRGCYC	1 cut(s)	216
Fsp4HI	GCNGC	1 cut(s)	26
FspBI	CTAG	1 cut(s)	183
GlaI	GCGC	1 cut(s)	157
GluI	GCNGC	1 cut(s)	26
HaeIII	GGCC	1 cut(s)	181
HhaI	GCGC	1 cut(s)	158
Hin1II	CATG	2 cut(s)	58, 208
Hin6I	GCGC	1 cut(s)	156
HinP1I	GCGC	1 cut(s)	156
HinfI	GANTC	1 cut(s)	13
Hpy166II	GTNNAC	1 cut(s)	40
Hpy188III	TCNNGA	1 cut(s)	164
Hpy8I	GTNNAC	1 cut(s)	40
HpyCH4V	TGCA	1 cut(s)	25
HpyF10VI	GCNNNNNNNGC	1 cut(s)	106
Hsp92II	CATG	2 cut(s)	58, 208
HspAI	GCGC	1 cut(s)	156
Kzo9I	GATC	2 cut(s)	88, 160
LguI	GCTCTTC	1 cut(s)	153
LpnPI	CCDG	7 cut(s)	20, 28, 30, 76, 114, 125, 177
Lsp1109I	GCAGC	1 cut(s)	37
MaeI	CTAG	1 cut(s)	183
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	2 cut(s)	90, 162
MboI	GATC	2 cut(s)	88, 160
MboII	GAAGA	5 cut(s)	105, 128, 140, 185, 191
MhlI	GDGCHC	1 cut(s)	216
MluCI	AATT	1 cut(s)	95
MlyI	GAGTC	1 cut(s)	7
MroXI	GAANNNNTTC	1 cut(s)	198
MseI	TTAA	1 cut(s)	47
MvnI	CGCG	1 cut(s)	219
MwoI	GCNNNNNNNGC	1 cut(s)	106
NcoI	CCATGG	1 cut(s)	54
NdeII	GATC	2 cut(s)	88, 160
NlaIII	CATG	2 cut(s)	58, 208
NmuCI	GTSAC	1 cut(s)	10
NspI	RCATGY	1 cut(s)	208
PceI	AGGCCT	1 cut(s)	181
PciSI	GCTCTTC	1 cut(s)	153
PdmI	GAANNNNTTC	1 cut(s)	198
PkrI	GCNGC	1 cut(s)	27
PleI	GAGTC	1 cut(s)	7
PpsI	GAGTC	1 cut(s)	7
SapI	GCTCTTC	1 cut(s)	153
SaqAI	TTAA	1 cut(s)	47
SatI	GCNGC	1 cut(s)	26
Sau3AI	GATC	2 cut(s)	88, 160
SchI	GAGTC	1 cut(s)	7
SduI	GDGCHC	1 cut(s)	216
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	1 cut(s)	95
SseBI	AGGCCT	1 cut(s)	181
SsiI	CCGC	1 cut(s)	217
SspMI	CTAG	1 cut(s)	183
StuI	AGGCCT	1 cut(s)	181
StyI	CCWWGG	1 cut(s)	54
TaqI	TCGA	1 cut(s)	234
TasI	AATT	1 cut(s)	95
Tru1I	TTAA	1 cut(s)	47
Tru9I	TTAA	1 cut(s)	47
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	1 cut(s)	25
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	1 cut(s)	17
XceI	RCATGY	1 cut(s)	208
XmiI	GTMKAC	1 cut(s)	39
XmnI	GAANNNNTTC	1 cut(s)	198
XspI	CTAG	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.