Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0034311

Physical Location & Seq

Genomic Coordinates Reverse (-)

63377687 .. 63379203

Gene Structure 1517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG418500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGGATATTCGGATGAAAATAATCCATGGAATAGCAAAAGGCCATATCTGGTAGACTGGTTAAAGTCCATGGTTGCCAGTCAAAGAACTGCTTATGTAGTTGATCCTAAATTGCCAGAGAAGCCATCTTCAAAAGAACTCAAAAGGGTTCTTCTGGTTGCTCTTCGTTGCGCTGATCCTGATTTAGAAGATAGGCCTAGAATGGGAGAAGTTCTTCACATGCTTGAGCCCCGCGACTTGCTAATGCTCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

84

Amino Acids

9.77

Weight (kDa)

5.79

Isoelectric Point (pI)

28.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0034311)

Species	Orthologous Gene IDs
rosa_samantha	Rh1CG400900 Rh1DG418500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	54
AccII	CGCG	1 cut(s)	234
AciI	CCGC	1 cut(s)	232
AclWI	GGATC	2 cut(s)	98, 170
AfiI	CCNNNNNNNGG	1 cut(s)	203
AgsI	TTSAA	1 cut(s)	132
AlwI	GGATC	2 cut(s)	98, 170
AoxI	GGCC	2 cut(s)	41, 194
Asp700I	GAANNNNTTC	1 cut(s)	213
AspLEI	GCGC	1 cut(s)	173
BanII	GRGCYC	1 cut(s)	231
BccI	CCATC	1 cut(s)	133
BfaI	CTAG	1 cut(s)	198
BpuEI	CTTGAG	1 cut(s)	245
BsaJI	CCNNGG	2 cut(s)	26, 69
Bsc4I	CCNNNNNNNGG	1 cut(s)	203
Bse1I	ACTGG	2 cut(s)	62, 78
BseDI	CCNNGG	2 cut(s)	26, 69
BseGI	GGATG	1 cut(s)	19
BseLI	CCNNNNNNNGG	1 cut(s)	203
BseNI	ACTGG	2 cut(s)	62, 78
Bsh1236I	CGCG	1 cut(s)	234
BshFI	GGCC	2 cut(s)	43, 196
BslI	CCNNNNNNNGG	1 cut(s)	203
BsnI	GGCC	2 cut(s)	43, 196
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	2 cut(s)	103, 175
Bsp19I	CCATGG	2 cut(s)	26, 69
BspACI	CCGC	1 cut(s)	232
BspANI	GGCC	2 cut(s)	43, 196
BspFNI	CGCG	1 cut(s)	234
BspPI	GGATC	2 cut(s)	98, 170
BspQI	GCTCTTC	1 cut(s)	168
BsrI	ACTGG	2 cut(s)	62, 78
BssECI	CCNNGG	2 cut(s)	26, 69
BssMI	GATC	2 cut(s)	103, 175
BssT1I	CCWWGG	2 cut(s)	26, 69
Bst6I	CTCTTC	1 cut(s)	168
BstDSI	CCRYGG	2 cut(s)	26, 69
BstF5I	GGATG	1 cut(s)	19
BstFNI	CGCG	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	173
BstKTI	GATC	2 cut(s)	106, 178
BstMBI	GATC	2 cut(s)	103, 175
BstMWI	GCNNNNNNNGC	1 cut(s)	121
BstNSI	RCATGY	1 cut(s)	223
BstUI	CGCG	1 cut(s)	234
BsuRI	GGCC	2 cut(s)	43, 196
BtgI	CCRYGG	2 cut(s)	26, 69
BtsCI	GGATG	1 cut(s)	19
CfoI	GCGC	1 cut(s)	173
CviAII	CATG	3 cut(s)	27, 70, 220
CviJI	RGCY	4 cut(s)	43, 124, 196, 229
CviKI_1	RGCY	4 cut(s)	43, 124, 196, 229
DpnI	GATC	2 cut(s)	105, 177
DpnII	GATC	2 cut(s)	103, 175
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
Eco130I	CCWWGG	2 cut(s)	26, 69
Eco147I	AGGCCT	1 cut(s)	196
Eco24I	GRGCYC	1 cut(s)	231
EcoT14I	CCWWGG	2 cut(s)	26, 69
EcoT38I	GRGCYC	1 cut(s)	231
ErhI	CCWWGG	2 cut(s)	26, 69
FaeI	CATG	3 cut(s)	30, 73, 223
FaiI	YATR	5 cut(s)	28, 46, 71, 96, 221
FalI	AAGNNNNNCTT	2 cut(s)	76, 108
FatI	CATG	3 cut(s)	26, 69, 219
FauI	CCCGC	1 cut(s)	239
FblI	GTMKAC	1 cut(s)	54
FokI	GGATG	1 cut(s)	26
FriOI	GRGCYC	1 cut(s)	231
FspBI	CTAG	1 cut(s)	198
GlaI	GCGC	1 cut(s)	172
HaeIII	GGCC	2 cut(s)	43, 196
HhaI	GCGC	1 cut(s)	173
Hin1II	CATG	3 cut(s)	30, 73, 223
Hin6I	GCGC	1 cut(s)	171
HinP1I	GCGC	1 cut(s)	171
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	1 cut(s)	13
Hpy188III	TCNNGA	1 cut(s)	179
Hpy8I	GTNNAC	1 cut(s)	55
HpyF10VI	GCNNNNNNNGC	1 cut(s)	121
Hsp92II	CATG	3 cut(s)	30, 73, 223
HspAI	GCGC	1 cut(s)	171
Kzo9I	GATC	2 cut(s)	103, 175
LguI	GCTCTTC	1 cut(s)	168
LpnPI	CCDG	6 cut(s)	35, 43, 91, 129, 140, 192
MaeI	CTAG	1 cut(s)	198
MalI	GATC	2 cut(s)	105, 177
MboI	GATC	2 cut(s)	103, 175
MboII	GAAGA	5 cut(s)	120, 143, 155, 200, 206
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	1 cut(s)	110
MroXI	GAANNNNTTC	1 cut(s)	213
MseI	TTAA	1 cut(s)	62
MvnI	CGCG	1 cut(s)	234
MwoI	GCNNNNNNNGC	1 cut(s)	121
NcoI	CCATGG	2 cut(s)	26, 69
NdeII	GATC	2 cut(s)	103, 175
NlaIII	CATG	3 cut(s)	30, 73, 223
NspI	RCATGY	1 cut(s)	223
PceI	AGGCCT	1 cut(s)	196
PciSI	GCTCTTC	1 cut(s)	168
PdmI	GAANNNNTTC	1 cut(s)	213
SapI	GCTCTTC	1 cut(s)	168
SaqAI	TTAA	1 cut(s)	62
Sau3AI	GATC	2 cut(s)	103, 175
SduI	GDGCHC	1 cut(s)	231
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	1 cut(s)	110
SseBI	AGGCCT	1 cut(s)	196
SsiI	CCGC	1 cut(s)	232
SspMI	CTAG	1 cut(s)	198
StuI	AGGCCT	1 cut(s)	196
StyI	CCWWGG	2 cut(s)	26, 69
TaqI	TCGA	1 cut(s)	249
TasI	AATT	1 cut(s)	110
Tru1I	TTAA	1 cut(s)	62
Tru9I	TTAA	1 cut(s)	62
TspDTI	ATGAA	1 cut(s)	30
XceI	RCATGY	1 cut(s)	223
XmiI	GTMKAC	1 cut(s)	54
XmnI	GAANNNNTTC	1 cut(s)	213
XspI	CTAG	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.