Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0029019

Physical Location & Seq

Genomic Coordinates Forward (+)

5406110 .. 5406496

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG035600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGAAATACTGTCATACAGTTCTGCTTCATGCTGTGATGTTGTAAATTTAAGGTGGAACTTGGTTGTAAAAAGCTCGAGTTTAAATGGATCCAAGCTCCCAGCTTTTAGAAAAAGTAGAGTTCTTTGTGCTAATTTTGATTCCACAAATGCGGTTGTGAGCTGTTATCGTATAAATCAGTCTTTCTCAAAGAAACTAAATCACCGGGGAGGTTTTAAGGCATTAAACTCCCATGAGAAGTTTAAACAAGTTGGTCCAATTCAATCAAGTAGAAGCTCTGATGGCTACGTAATTGGTGTGGAAGAGGATGCAAATATTTCAGAAACTGGGGAATCAGTAACTAAAGTTTTGATTCCTGCTGTACCGGATGAATATGTGCTCCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0015994 GO:0015996 GO:0016020 GO:0016787 GO:0016788 GO:0019439 GO:0031976 GO:0031984 GO:0033013 GO:0033015 GO:0034357 GO:0034641 GO:0042440 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044270 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046149 GO:0046483 GO:0046700 GO:0051186 GO:0051187 GO:0052689 GO:0055035 GO:0071704 GO:0080124 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_6

Protein Analysis

128

Amino Acids

14.03

Weight (kDa)

8.72

Isoelectric Point (pI)

53.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0029019)

Species	Orthologous Gene IDs
prunus_persica	Prupe.6G030800_v2.0.a1
rosa_samantha	Rh1DG035600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	152
AclWI	GGATC	2 cut(s)	84, 97
AcsI	RAATTY	1 cut(s)	46
AfaI	GTAC	1 cut(s)	363
AgsI	TTSAA	1 cut(s)	263
AluBI	AGCT	5 cut(s)	75, 97, 104, 162, 276
AluI	AGCT	5 cut(s)	75, 97, 104, 162, 276
Alw21I	GWGCWC	1 cut(s)	381
AlwI	GGATC	2 cut(s)	84, 97
AlwNI	CAGNNNCTG	1 cut(s)	326
Ama87I	CYCGRG	1 cut(s)	76
ApoI	RAATTY	1 cut(s)	46
AspS9I	GGNCC	1 cut(s)	254
AsuC2I	CCSGG	1 cut(s)	206
AsuHPI	GGTGA	1 cut(s)	194
AvaI	CYCGRG	1 cut(s)	76
AvaII	GGWCC	1 cut(s)	254
BamHI	GGATCC	1 cut(s)	89
Bbv12I	GWGCWC	1 cut(s)	381
BccI	CCATC	1 cut(s)	275
BcnI	CCSGG	1 cut(s)	206
Bme1390I	CCNGG	1 cut(s)	206
Bme18I	GGWCC	1 cut(s)	254
BmeT110I	CYCGRG	1 cut(s)	76
BmgT120I	GGNCC	1 cut(s)	254
BmiI	GGNNCC	1 cut(s)	91
BmrFI	CCNGG	1 cut(s)	206
BmrI	ACTGGG	1 cut(s)	336
BmsI	GCATC	1 cut(s)	298
BmuI	ACTGGG	1 cut(s)	336
BpuMI	CCSGG	1 cut(s)	206
BsaAI	YACGTR	1 cut(s)	289
BsaJI	CCNNGG	1 cut(s)	205
BsaWI	WCCGGW	1 cut(s)	364
Bse1I	ACTGG	1 cut(s)	331
BseDI	CCNNGG	1 cut(s)	205
BseGI	GGATG	2 cut(s)	313, 373
BseNI	ACTGG	1 cut(s)	331
BseYI	CCCAGC	1 cut(s)	100
BsiHKAI	GWGCWC	1 cut(s)	381
BsiHKCI	CYCGRG	1 cut(s)	76
BsiSI	CCGG	2 cut(s)	205, 365
BsoBI	CYCGRG	1 cut(s)	76
Bsp1286I	GDGCHC	1 cut(s)	381
Bsp143I	GATC	1 cut(s)	89
BspACI	CCGC	1 cut(s)	152
BspLI	GGNNCC	1 cut(s)	91
BspPI	GGATC	2 cut(s)	84, 97
BsrI	ACTGG	1 cut(s)	331
BssECI	CCNNGG	1 cut(s)	205
BssMI	GATC	1 cut(s)	89
Bst4CI	ACNGT	2 cut(s)	12, 20
Bst6I	CTCTTC	1 cut(s)	297
BstBAI	YACGTR	1 cut(s)	289
BstF5I	GGATG	2 cut(s)	313, 373
BstKTI	GATC	1 cut(s)	92
BstMBI	GATC	1 cut(s)	89
BstMWI	GCNNNNNNNGC	1 cut(s)	282
BstSCI	CCNGG	1 cut(s)	204
BstSNI	TACGTA	1 cut(s)	289
BstX2I	RGATCY	1 cut(s)	89
BstYI	RGATCY	1 cut(s)	89
BtsCI	GGATG	2 cut(s)	313, 373
CaiI	CAGNNNCTG	1 cut(s)	326
Cfr13I	GGNCC	1 cut(s)	254
Csp6I	GTAC	1 cut(s)	362
CviAII	CATG	2 cut(s)	30, 233
CviJI	RGCY	6 cut(s)	75, 97, 104, 162, 276, 285
CviKI_1	RGCY	6 cut(s)	75, 97, 104, 162, 276, 285
CviQI	GTAC	1 cut(s)	362
DpnI	GATC	1 cut(s)	91
DpnII	GATC	1 cut(s)	89
DraI	TTTAAA	2 cut(s)	84, 244
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
Eco105I	TACGTA	1 cut(s)	289
Eco47I	GGWCC	1 cut(s)	254
Eco88I	CYCGRG	1 cut(s)	76
FaeI	CATG	2 cut(s)	33, 236
FaiI	YATR	6 cut(s)	16, 31, 173, 234, 375, 385
FatI	CATG	2 cut(s)	29, 232
FokI	GGATG	2 cut(s)	320, 380
GsaI	CCCAGC	1 cut(s)	104
HapII	CCGG	2 cut(s)	205, 365
Hin1II	CATG	2 cut(s)	33, 236
HinfI	GANTC	3 cut(s)	140, 332, 352
HpaII	CCGG	2 cut(s)	205, 365
HphI	GGTGA	1 cut(s)	194
Hpy188I	TCNGA	2 cut(s)	280, 322
HpyCH4III	ACNGT	2 cut(s)	12, 20
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	1 cut(s)	311
HpyF10VI	GCNNNNNNNGC	1 cut(s)	282
HpySE526I	ACGT	1 cut(s)	288
Hsp92II	CATG	2 cut(s)	33, 236
Kzo9I	GATC	1 cut(s)	89
LmnI	GCTCC	2 cut(s)	102, 384
LpnPI	CCDG	5 cut(s)	114, 218, 312, 369, 378
LweI	GCATC	1 cut(s)	298
MaeII	ACGT	1 cut(s)	288
MaeIII	GTNAC	1 cut(s)	337
MalI	GATC	1 cut(s)	91
MboI	GATC	1 cut(s)	89
MboII	GAAGA	1 cut(s)	314
MflI	RGATCY	1 cut(s)	89
MhlI	GDGCHC	1 cut(s)	381
MluCI	AATT	4 cut(s)	46, 133, 258, 291
MnlI	CCTC	2 cut(s)	203, 298
MseI	TTAA	5 cut(s)	50, 83, 216, 224, 243
MspI	CCGG	2 cut(s)	205, 365
MspR9I	CCNGG	1 cut(s)	206
MssI	GTTTAAAC	1 cut(s)	244
MwoI	GCNNNNNNNGC	1 cut(s)	282
NciI	CCSGG	1 cut(s)	206
NdeII	GATC	1 cut(s)	89
NlaIII	CATG	2 cut(s)	33, 236
NlaIV	GGNNCC	1 cut(s)	91
PaeR7I	CTCGAG	1 cut(s)	76
PfeI	GAWTC	3 cut(s)	140, 332, 352
PmeI	GTTTAAAC	1 cut(s)	244
Ppu21I	YACGTR	1 cut(s)	289
PspFI	CCCAGC	1 cut(s)	100
PspN4I	GGNNCC	1 cut(s)	91
PspPI	GGNCC	1 cut(s)	254
PspXI	VCTCGAGB	1 cut(s)	76
PstNI	CAGNNNCTG	1 cut(s)	326
PsuI	RGATCY	1 cut(s)	89
RsaI	GTAC	1 cut(s)	363
RsaNI	GTAC	1 cut(s)	362
SaqAI	TTAA	5 cut(s)	50, 83, 216, 224, 243
Sau3AI	GATC	1 cut(s)	89
Sau96I	GGNCC	1 cut(s)	254
ScrFI	CCNGG	1 cut(s)	206
SduI	GDGCHC	1 cut(s)	381
SetI	ASST	8 cut(s)	56, 77, 99, 106, 164, 214, 278, 291
SfaNI	GCATC	1 cut(s)	298
Sfr274I	CTCGAG	1 cut(s)	76
SinI	GGWCC	1 cut(s)	254
SlaI	CTCGAG	1 cut(s)	76
SmlI	CTYRAG	1 cut(s)	76
SmoI	CTYRAG	1 cut(s)	76
SnaBI	TACGTA	1 cut(s)	289
Sse9I	AATT	4 cut(s)	46, 133, 258, 291
SsiI	CCGC	1 cut(s)	152
SspI	AATATT	1 cut(s)	316
StyD4I	CCNGG	1 cut(s)	204
TaaI	ACNGT	2 cut(s)	12, 20
TaiI	ACGT	1 cut(s)	291
TaqI	TCGA	1 cut(s)	77
TasI	AATT	4 cut(s)	46, 133, 258, 291
TfiI	GAWTC	3 cut(s)	140, 332, 352
Tru1I	TTAA	5 cut(s)	50, 83, 216, 224, 243
Tru9I	TTAA	5 cut(s)	50, 83, 216, 224, 243
TspDTI	ATGAA	2 cut(s)	18, 384
VpaK11BI	GGWCC	1 cut(s)	254
XapI	RAATTY	1 cut(s)	46
XhoI	CTCGAG	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.