Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0021297

Physical Location & Seq

Genomic Coordinates Reverse (-)

5843205 .. 5843904

Gene Structure 700 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG036200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGCAAGTACGTCTGATTCTGTTGTGAAGTTTTCAAAGGTATGGATGTCTGATGTTATATCTAAAATATTCAGTTCCATGTTCGTCGTTGTTTTAATTCCATTTAATATTGATCGTATGGAATTAATCGAGTTTCTGAGATCTAGAGACTTCTTGATCTCGAATGGCCGGTCTCTTCCTTATGTTCATGCTGTTCCTGTTATTGATACCATTCCTGATGATGATATTGAAGAAGACGATGAATATGTTAATCGAACGCACTGGAATTTTCATGCTTGGGATCCTGCTGGGAATAAAAATACGGCCATTTCATTGACTGACTGGAGAGATGACAATTTTAATGCTAATGTAGTCGATCCTTCAACTGGAGCTGATCATGGTCAGAATTATTATGTATTAAGTATAGATTTTGATAGGTTTCTTATGTCGTTTGATAAACGAGTTGTTGTGTTTATCAATGATTATAATAAAGACCTTGCTTCATGCAAGGCGAGTGTAATTGATTGTAATCAATATTATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

174

Amino Acids

20.07

Weight (kDa)

4.51

Isoelectric Point (pI)

41.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021297)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0318571
rosa_samantha	Rh1AG035200 Rh1BG030100 Rh1DG036200
rosa_wichuraiana	Rw1G002760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	465, 519
AclWI	GGATC	3 cut(s)	275, 288, 350
AcoI	YGGCCR	2 cut(s)	166, 303
AcsI	RAATTY	1 cut(s)	265
AfaI	GTAC	1 cut(s)	10
AfiI	CCNNNNNNNGG	1 cut(s)	365
AgsI	TTSAA	3 cut(s)	36, 230, 363
AluBI	AGCT	1 cut(s)	371
AluI	AGCT	1 cut(s)	371
Alw26I	GTCTC	2 cut(s)	141, 177
AlwI	GGATC	3 cut(s)	275, 288, 350
AoxI	GGCC	2 cut(s)	166, 303
ApoI	RAATTY	1 cut(s)	265
ArsI	GACNNNNNNTTYG	2 cut(s)	155, 187
AseI	ATTAAT	1 cut(s)	125
BamHI	GGATCC	1 cut(s)	280
BbsI	GAAGAC	1 cut(s)	240
BceAI	ACGGC	1 cut(s)	318
BclI	TGATCA	1 cut(s)	373
BcoDI	GTCTC	2 cut(s)	141, 177
BfaI	CTAG	1 cut(s)	144
BglII	AGATCT	1 cut(s)	140
BmiI	GGNNCC	1 cut(s)	282
BpiI	GAAGAC	1 cut(s)	240
BpmI	CTGGAG	2 cut(s)	343, 387
BsaBI	GATNNNNATC	1 cut(s)	507
BsaI	GGTCTC	1 cut(s)	177
Bsc4I	CCNNNNNNNGG	1 cut(s)	365
Bse118I	RCCGGY	1 cut(s)	168
Bse1I	ACTGG	3 cut(s)	266, 326, 370
Bse8I	GATNNNNATC	1 cut(s)	507
BseGI	GGATG	1 cut(s)	51
BseJI	GATNNNNATC	1 cut(s)	507
BseLI	CCNNNNNNNGG	1 cut(s)	365
BseMII	CTCAG	1 cut(s)	128
BseNI	ACTGG	3 cut(s)	266, 326, 370
BseYI	CCCAGC	1 cut(s)	287
BshFI	GGCC	2 cut(s)	168, 305
BsiSI	CCGG	1 cut(s)	169
BslI	CCNNNNNNNGG	1 cut(s)	365
BsmAI	GTCTC	2 cut(s)	141, 177
BsnI	GGCC	2 cut(s)	168, 305
Bso31I	GGTCTC	1 cut(s)	177
Bsp143I	GATC	6 cut(s)	112, 140, 156, 280, 355, 373
BspANI	GGCC	2 cut(s)	168, 305
BspCNI	CTCAG	1 cut(s)	129
BspLI	GGNNCC	1 cut(s)	282
BspPI	GGATC	3 cut(s)	275, 288, 350
BspTNI	GGTCTC	1 cut(s)	177
BsrFI	RCCGGY	1 cut(s)	168
BsrI	ACTGG	3 cut(s)	266, 326, 370
BssAI	RCCGGY	1 cut(s)	168
BssMI	GATC	6 cut(s)	112, 140, 156, 280, 355, 373
Bst6I	CTCTTC	1 cut(s)	180
BstDEI	CTNAG	1 cut(s)	137
BstF5I	GGATG	1 cut(s)	51
BstKTI	GATC	6 cut(s)	115, 143, 159, 283, 358, 376
BstMAI	GTCTC	2 cut(s)	141, 177
BstMBI	GATC	6 cut(s)	112, 140, 156, 280, 355, 373
BstV2I	GAAGAC	1 cut(s)	240
BstX2I	RGATCY	2 cut(s)	140, 280
BstYI	RGATCY	2 cut(s)	140, 280
BsuRI	GGCC	2 cut(s)	168, 305
BtsCI	GGATG	1 cut(s)	51
BtsIMutI	CAGTG	1 cut(s)	259
Cfr10I	RCCGGY	1 cut(s)	168
Csp6I	GTAC	1 cut(s)	9
CviAII	CATG	5 cut(s)	79, 188, 272, 377, 483
CviJI	RGCY	3 cut(s)	168, 305, 371
CviKI_1	RGCY	3 cut(s)	168, 305, 371
CviQI	GTAC	1 cut(s)	9
DdeI	CTNAG	1 cut(s)	137
DpnI	GATC	6 cut(s)	114, 142, 158, 282, 357, 375
DpnII	GATC	6 cut(s)	112, 140, 156, 280, 355, 373
EaeI	YGGCCR	2 cut(s)	166, 303
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Eco31I	GGTCTC	1 cut(s)	177
FaeI	CATG	5 cut(s)	82, 191, 275, 380, 486
FatI	CATG	5 cut(s)	78, 187, 271, 376, 482
FbaI	TGATCA	1 cut(s)	373
FokI	GGATG	1 cut(s)	58
FspBI	CTAG	1 cut(s)	144
GsaI	CCCAGC	1 cut(s)	291
GsuI	CTGGAG	2 cut(s)	343, 387
HaeIII	GGCC	2 cut(s)	168, 305
HapII	CCGG	1 cut(s)	169
Hin1II	CATG	5 cut(s)	82, 191, 275, 380, 486
HinfI	GANTC	1 cut(s)	17
HpaII	CCGG	1 cut(s)	169
Hpy188I	TCNGA	4 cut(s)	16, 52, 138, 384
Hpy188III	TCNNGA	4 cut(s)	144, 154, 160, 215
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	1 cut(s)	369
HpyCH4IV	ACGT	1 cut(s)	11
HpyCH4V	TGCA	1 cut(s)	486
HpyF3I	CTNAG	1 cut(s)	137
HpySE526I	ACGT	1 cut(s)	11
Hsp92II	CATG	5 cut(s)	82, 191, 275, 380, 486
Ksp22I	TGATCA	1 cut(s)	373
Kzo9I	GATC	6 cut(s)	112, 140, 156, 280, 355, 373
LmnI	GCTCC	1 cut(s)	368
LpnPI	CCDG	8 cut(s)	182, 210, 228, 247, 273, 297, 307, 351
MaeI	CTAG	1 cut(s)	144
MaeII	ACGT	1 cut(s)	11
MalI	GATC	6 cut(s)	114, 142, 158, 282, 357, 375
MboI	GATC	6 cut(s)	112, 140, 156, 280, 355, 373
MboII	GAAGA	3 cut(s)	167, 242, 245
MflI	RGATCY	2 cut(s)	140, 280
MluCI	AATT	7 cut(s)	96, 122, 265, 334, 385, 498, 520
MseI	TTAA	7 cut(s)	95, 105, 125, 249, 339, 398, 523
MspI	CCGG	1 cut(s)	169
NdeII	GATC	6 cut(s)	112, 140, 156, 280, 355, 373
NlaIII	CATG	5 cut(s)	82, 191, 275, 380, 486
NlaIV	GGNNCC	1 cut(s)	282
PfeI	GAWTC	1 cut(s)	17
PshBI	ATTAAT	1 cut(s)	125
PsiI	TTATAA	2 cut(s)	465, 519
PspFI	CCCAGC	1 cut(s)	287
PspN4I	GGNNCC	1 cut(s)	282
PsuI	RGATCY	2 cut(s)	140, 280
RsaI	GTAC	1 cut(s)	10
RsaNI	GTAC	1 cut(s)	9
SaqAI	TTAA	7 cut(s)	95, 105, 125, 249, 339, 398, 523
Sau3AI	GATC	6 cut(s)	112, 140, 156, 280, 355, 373
SetI	ASST	5 cut(s)	14, 42, 373, 419, 477
Sse9I	AATT	7 cut(s)	96, 122, 265, 334, 385, 498, 520
SspI	AATATT	3 cut(s)	69, 109, 515
SspMI	CTAG	1 cut(s)	144
TaiI	ACGT	1 cut(s)	14
TaqI	TCGA	4 cut(s)	129, 161, 253, 354
TasI	AATT	7 cut(s)	96, 122, 265, 334, 385, 498, 520
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	7 cut(s)	95, 105, 125, 249, 339, 398, 523
Tru9I	TTAA	7 cut(s)	95, 105, 125, 249, 339, 398, 523
TscAI	CASTG	1 cut(s)	266
TspDTI	ATGAA	5 cut(s)	176, 255, 260, 300, 471
TspRI	CASTG	1 cut(s)	266
VspI	ATTAAT	1 cut(s)	125
XapI	RAATTY	1 cut(s)	265
XbaI	TCTAGA	1 cut(s)	143
XspI	CTAG	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.