Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0021297

Physical Location & Seq

Genomic Coordinates Forward (+)

4982740 .. 4983642

Gene Structure 903 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G002760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCAGGTACGTCTGATTCTGTTGTGAAGTTTTCAAAGGTATGGATGTCTGATGTTATATCTAAAATATTCAGTTCCATGTTCGTCGTCGTTTTAATTCCATTTAATATTGATCGTATGGAATTAATCGAGTTTCTGAGATCTAGAGACTTCTTGATCTCGAATGGCCGGTCTCTTCCTTATGTTCATGCTGTTCCTGTTATTGATACCATTCCTGATGATGATATTGAAGAAGACGATGAATATGTTAATCGAACGCACTGGAATTTTCATGCTTGGGATCCTGCTGGGAATAAAAATACGGCCATTTCATTGACTGACTGGAGAGATGACAATTTTAATGCTGATGTAGTCGATCCTTCAACTGGAGCTGATCATGATATGATCAATATTAATTCAAAGCCTGTTGGACATTCTGTCCGTAAGCCTCAGCGCCGATTGAATTTAACTGAACGTTGTTTGAGCAAAACACTGGAGAATAATGATGCTCGTGTTGGATACTTGGCTCCTGATCGAAGATACCCATATGTTGTTTACTACGGCTGTAGTGTAGATGATATCGTGAAAGACTATAGTTGTGATGTATTAGGACATAAATATGTAACACTGCGTTTCTGCATAATTTGTTGGCTTAAACTTACTATTTTACCCTTTAATCCTCCATTTACACCTCTTTTTCTCTTTTATTTTTTTCTTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

233

Amino Acids

26.92

Weight (kDa)

5.32

Isoelectric Point (pI)

44.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021297)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0318571
rosa_samantha	Rh1AG035200 Rh1BG030100 Rh1DG036200
rosa_wichuraiana	Rw1G002760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	454
AclWI	GGATC	3 cut(s)	275, 288, 350
AcoI	YGGCCR	2 cut(s)	166, 303
AcsI	RAATTY	2 cut(s)	265, 442
AfaI	GTAC	1 cut(s)	10
AfiI	CCNNNNNNNGG	1 cut(s)	365
AgsI	TTSAA	5 cut(s)	36, 230, 363, 399, 442
AhdI	GACNNNNNGTC	1 cut(s)	416
AluBI	AGCT	1 cut(s)	371
AluI	AGCT	1 cut(s)	371
Alw26I	GTCTC	2 cut(s)	141, 177
AlwI	GGATC	3 cut(s)	275, 288, 350
AoxI	GGCC	2 cut(s)	166, 303
ApoI	RAATTY	2 cut(s)	265, 442
ArsI	GACNNNNNNTTYG	2 cut(s)	155, 187
AseI	ATTAAT	2 cut(s)	125, 393
AspLEI	GCGC	1 cut(s)	435
BamHI	GGATCC	1 cut(s)	280
BauI	CACGAG	1 cut(s)	489
BbsI	GAAGAC	1 cut(s)	240
BbvCI	CCTCAGC	1 cut(s)	429
BceAI	ACGGC	2 cut(s)	318, 556
BciVI	GTATCC	1 cut(s)	491
BclI	TGATCA	2 cut(s)	373, 384
BcoDI	GTCTC	2 cut(s)	141, 177
BfaI	CTAG	1 cut(s)	144
BfmI	CTRYAG	2 cut(s)	544, 571
BfoI	RGCGCY	1 cut(s)	436
BfuI	GTATCC	1 cut(s)	491
BglII	AGATCT	1 cut(s)	140
BmeRI	GACNNNNNGTC	1 cut(s)	416
BmiI	GGNNCC	2 cut(s)	282, 507
BmsI	GCATC	1 cut(s)	475
BpiI	GAAGAC	1 cut(s)	240
BpmI	CTGGAG	3 cut(s)	343, 387, 494
Bpu10I	CCTNAGC	1 cut(s)	429
BsaI	GGTCTC	1 cut(s)	177
Bsc4I	CCNNNNNNNGG	1 cut(s)	365
Bse118I	RCCGGY	1 cut(s)	168
Bse1I	ACTGG	4 cut(s)	266, 326, 370, 477
BseGI	GGATG	1 cut(s)	51
BseLI	CCNNNNNNNGG	1 cut(s)	365
BseMII	CTCAG	2 cut(s)	128, 443
BseNI	ACTGG	4 cut(s)	266, 326, 370, 477
BseYI	CCCAGC	1 cut(s)	287
BshFI	GGCC	2 cut(s)	168, 305
BsiSI	CCGG	1 cut(s)	169
BslI	CCNNNNNNNGG	1 cut(s)	365
BsmAI	GTCTC	2 cut(s)	141, 177
BsnI	GGCC	2 cut(s)	168, 305
Bso31I	GGTCTC	1 cut(s)	177
Bsp143I	GATC	8 cut(s)	112, 140, 156, 280, 355, 373, 384, 511
BspANI	GGCC	2 cut(s)	168, 305
BspCNI	CTCAG	2 cut(s)	129, 442
BspHI	TCATGA	1 cut(s)	376
BspLI	GGNNCC	2 cut(s)	282, 507
BspPI	GGATC	3 cut(s)	275, 288, 350
BspTNI	GGTCTC	1 cut(s)	177
BsrFI	RCCGGY	1 cut(s)	168
BsrI	ACTGG	4 cut(s)	266, 326, 370, 477
BssAI	RCCGGY	1 cut(s)	168
BssMI	GATC	8 cut(s)	112, 140, 156, 280, 355, 373, 384, 511
BssSI	CACGAG	1 cut(s)	489
Bst2BI	CACGAG	1 cut(s)	489
Bst6I	CTCTTC	1 cut(s)	180
BstDEI	CTNAG	2 cut(s)	137, 429
BstF5I	GGATG	1 cut(s)	51
BstH2I	RGCGCY	1 cut(s)	436
BstHHI	GCGC	1 cut(s)	435
BstKTI	GATC	8 cut(s)	115, 143, 159, 283, 358, 376, 387, 514
BstMAI	GTCTC	2 cut(s)	141, 177
BstMBI	GATC	8 cut(s)	112, 140, 156, 280, 355, 373, 384, 511
BstSFI	CTRYAG	2 cut(s)	544, 571
BstV2I	GAAGAC	1 cut(s)	240
BstX2I	RGATCY	2 cut(s)	140, 280
BstYI	RGATCY	2 cut(s)	140, 280
BsuI	GTATCC	1 cut(s)	491
BsuRI	GGCC	2 cut(s)	168, 305
BtsCI	GGATG	1 cut(s)	51
BtsI	GCAGTG	1 cut(s)	605
BtsIMutI	CAGTG	3 cut(s)	259, 470, 605
CciI	TCATGA	1 cut(s)	376
CfoI	GCGC	1 cut(s)	435
Cfr10I	RCCGGY	1 cut(s)	168
Csp6I	GTAC	1 cut(s)	9
CviAII	CATG	4 cut(s)	79, 188, 272, 377
CviJI	RGCY	8 cut(s)	168, 305, 371, 403, 427, 506, 543, 631
CviKI_1	RGCY	8 cut(s)	168, 305, 371, 403, 427, 506, 543, 631
CviQI	GTAC	1 cut(s)	9
DdeI	CTNAG	2 cut(s)	137, 429
DpnI	GATC	8 cut(s)	114, 142, 158, 282, 357, 375, 386, 513
DpnII	GATC	8 cut(s)	112, 140, 156, 280, 355, 373, 384, 511
DriI	GACNNNNNGTC	1 cut(s)	416
EaeI	YGGCCR	2 cut(s)	166, 303
Eam1104I	CTCTTC	1 cut(s)	180
Eam1105I	GACNNNNNGTC	1 cut(s)	416
EarI	CTCTTC	1 cut(s)	180
Eco31I	GGTCTC	1 cut(s)	177
Eco32I	GATATC	1 cut(s)	559
EcoRV	GATATC	1 cut(s)	559
FaeI	CATG	4 cut(s)	82, 191, 275, 380
FatI	CATG	4 cut(s)	78, 187, 271, 376
FauNDI	CATATG	1 cut(s)	526
FbaI	TGATCA	2 cut(s)	373, 384
FokI	GGATG	1 cut(s)	58
FspBI	CTAG	1 cut(s)	144
GlaI	GCGC	1 cut(s)	434
GsaI	CCCAGC	1 cut(s)	291
GsuI	CTGGAG	3 cut(s)	343, 387, 494
HaeII	RGCGCY	1 cut(s)	436
HaeIII	GGCC	2 cut(s)	168, 305
HapII	CCGG	1 cut(s)	169
HhaI	GCGC	1 cut(s)	435
Hin1II	CATG	4 cut(s)	82, 191, 275, 380
Hin6I	GCGC	1 cut(s)	433
HinP1I	GCGC	1 cut(s)	433
HinfI	GANTC	1 cut(s)	17
HpaII	CCGG	1 cut(s)	169
Hpy166II	GTNNAC	1 cut(s)	535
Hpy188I	TCNGA	3 cut(s)	16, 52, 138
Hpy188III	TCNNGA	7 cut(s)	144, 154, 160, 215, 377, 509, 562
Hpy8I	GTNNAC	1 cut(s)	535
Hpy99I	CGWCG	2 cut(s)	89, 92
HpyAV	CCTTC	1 cut(s)	369
HpyCH4IV	ACGT	2 cut(s)	11, 454
HpyCH4V	TGCA	1 cut(s)	618
HpyF3I	CTNAG	2 cut(s)	137, 429
HpySE526I	ACGT	2 cut(s)	11, 454
Hsp92II	CATG	4 cut(s)	82, 191, 275, 380
HspAI	GCGC	1 cut(s)	433
Ksp22I	TGATCA	2 cut(s)	373, 384
Kzo9I	GATC	8 cut(s)	112, 140, 156, 280, 355, 373, 384, 511
LmnI	GCTCC	2 cut(s)	368, 511
LweI	GCATC	1 cut(s)	475
MaeI	CTAG	1 cut(s)	144
MaeII	ACGT	2 cut(s)	11, 454
MaeIII	GTNAC	1 cut(s)	601
MalI	GATC	8 cut(s)	114, 142, 158, 282, 357, 375, 386, 513
MboI	GATC	8 cut(s)	112, 140, 156, 280, 355, 373, 384, 511
MboII	GAAGA	4 cut(s)	167, 242, 245, 528
MflI	RGATCY	2 cut(s)	140, 280
MluCI	AATT	7 cut(s)	96, 122, 265, 334, 394, 442, 621
MmeI	TCCRAC	2 cut(s)	388, 475
MnlI	CCTC	3 cut(s)	438, 669, 681
MslI	CAYNNNNRTG	1 cut(s)	597
MspI	CCGG	1 cut(s)	169
NdeI	CATATG	1 cut(s)	526
NdeII	GATC	8 cut(s)	112, 140, 156, 280, 355, 373, 384, 511
NlaIII	CATG	4 cut(s)	82, 191, 275, 380
NlaIV	GGNNCC	2 cut(s)	282, 507
PagI	TCATGA	1 cut(s)	376
PfeI	GAWTC	1 cut(s)	17
PshBI	ATTAAT	2 cut(s)	125, 393
Psp1406I	AACGTT	1 cut(s)	454
PspFI	CCCAGC	1 cut(s)	287
PspN4I	GGNNCC	2 cut(s)	282, 507
PsuI	RGATCY	2 cut(s)	140, 280
RsaI	GTAC	1 cut(s)	10
RsaNI	GTAC	1 cut(s)	9
RseI	CAYNNNNRTG	1 cut(s)	597
Sau3AI	GATC	8 cut(s)	112, 140, 156, 280, 355, 373, 384, 511
SetI	ASST	6 cut(s)	10, 14, 42, 373, 457, 673
SfaNI	GCATC	1 cut(s)	475
SfcI	CTRYAG	2 cut(s)	544, 571
SmiMI	CAYNNNNRTG	1 cut(s)	597
Sse9I	AATT	7 cut(s)	96, 122, 265, 334, 394, 442, 621
SspI	AATATT	3 cut(s)	69, 109, 391
SspMI	CTAG	1 cut(s)	144
TaiI	ACGT	2 cut(s)	14, 457
TaqI	TCGA	5 cut(s)	129, 161, 253, 354, 514
TasI	AATT	7 cut(s)	96, 122, 265, 334, 394, 442, 621
TfiI	GAWTC	1 cut(s)	17
TscAI	CASTG	3 cut(s)	266, 477, 612
TspDTI	ATGAA	4 cut(s)	176, 255, 260, 300
TspGWI	ACGGA	1 cut(s)	410
TspRI	CASTG	3 cut(s)	266, 477, 612
VspI	ATTAAT	2 cut(s)	125, 393
XapI	RAATTY	2 cut(s)	265, 442
XbaI	TCTAGA	1 cut(s)	143
XspI	CTAG	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.