Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0024784

Physical Location & Seq

Genomic Coordinates Reverse (-)

40175538 .. 40175918

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG205700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGTTGATTGGAAATGTGTACAGGTTTTGTAGTGTGAAGACTTCTAGGACTTCGCCGCGGTCGGACCCCAATAAGCCGGCGAATGTGGCTGAGGCGATTGCGTCGTGGGGGTTGGATTATGTGGTGATTACTAGTGTGGACCGGGATGATATGCCTGATCAAGGGAGTGGACATTTTGCTGAGATCGTGATCAAGTTGAAGAATCTCAAACCCAATATGCTCATCAAGGCTTTAAGGGTGTGGGATGATTACTGTGGGCTGCTCTTTCATGGTCATGGGGGCATTAGCAGCGGCGACCATGACGCCTGGATCGGGGCTTTGAAGGGATGGACAGACCCTTTGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006464 GO:0006520 GO:0006544 GO:0006546 GO:0006629 GO:0006631 GO:0006633 GO:0006732 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009056 GO:0009058 GO:0009063 GO:0009069 GO:0009071 GO:0009106 GO:0009107 GO:0009108 GO:0009249 GO:0009987 GO:0010467 GO:0016053 GO:0016054 GO:0016740 GO:0016782 GO:0016783 GO:0016992 GO:0017144 GO:0018065 GO:0018130 GO:0018193 GO:0018205 GO:0019538 GO:0019752 GO:0031974 GO:0032787 GO:0036211 GO:0042133 GO:0042135 GO:0042737 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044272 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0046483 GO:0051186 GO:0051188 GO:0051604 GO:0065007 GO:0065008 GO:0070013 GO:0070283 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00785 ko01100 map00785 map01100

Pfam Domains

Protein Families

LIAS_N Radical_SAM

Protein Analysis

115

Amino Acids

12.7

Weight (kDa)

6.89

Isoelectric Point (pI)

15.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024784)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0348111
rosa_samantha	Rh1BG175900 Rh1DG205700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	58
AciI	CCGC	3 cut(s)	56, 58, 291
AclWI	GGATC	1 cut(s)	317
AcyI	GRCGYC	1 cut(s)	303
AfaI	GTAC	1 cut(s)	20
AfiI	CCNNNNNNNGG	2 cut(s)	161, 312
AgsI	TTSAA	2 cut(s)	199, 322
AhlI	ACTAGT	1 cut(s)	131
AjnI	CCWGG	1 cut(s)	305
AlwI	GGATC	1 cut(s)	317
ApeKI	GCWGC	2 cut(s)	259, 288
ArsI	GACNNNNNNTTYG	1 cut(s)	322
AspS9I	GGNCC	2 cut(s)	64, 139
AsuC2I	CCSGG	1 cut(s)	143
AsuHPI	GGTGA	1 cut(s)	136
AvaII	GGWCC	2 cut(s)	64, 139
BbsI	GAAGAC	1 cut(s)	44
BbvCI	CCTCAGC	1 cut(s)	90
BbvI	GCAGC	2 cut(s)	246, 300
BccI	CCATC	1 cut(s)	321
BciT130I	CCWGG	1 cut(s)	307
BclI	TGATCA	2 cut(s)	157, 189
BcnI	CCSGG	1 cut(s)	143
BcuI	ACTAGT	1 cut(s)	131
BfaI	CTAG	2 cut(s)	45, 132
BisI	GCNGC	4 cut(s)	56, 260, 289, 292
BlsI	GCNGC	4 cut(s)	57, 261, 290, 293
Bme1390I	CCNGG	2 cut(s)	143, 307
Bme18I	GGWCC	2 cut(s)	64, 139
BmgT120I	GGNCC	2 cut(s)	64, 139
BmiI	GGNNCC	1 cut(s)	66
BmrFI	CCNGG	2 cut(s)	143, 307
BpiI	GAAGAC	1 cut(s)	44
Bpu10I	CCTNAGC	1 cut(s)	90
BpuMI	CCSGG	1 cut(s)	143
BsaBI	GATNNNNATC	1 cut(s)	188
BsaHI	GRCGYC	1 cut(s)	303
BsaJI	CCNNGG	1 cut(s)	56
Bsc4I	CCNNNNNNNGG	2 cut(s)	161, 312
Bse118I	RCCGGY	1 cut(s)	76
Bse8I	GATNNNNATC	1 cut(s)	188
BseBI	CCWGG	1 cut(s)	307
BseDI	CCNNGG	1 cut(s)	56
BseGI	GGATG	3 cut(s)	151, 250, 332
BseJI	GATNNNNATC	1 cut(s)	188
BseLI	CCNNNNNNNGG	2 cut(s)	161, 312
BseMII	CTCAG	2 cut(s)	81, 171
BseXI	GCAGC	2 cut(s)	246, 300
Bsh1236I	CGCG	1 cut(s)	58
Bsh1285I	CGRYCG	1 cut(s)	62
BsiEI	CGRYCG	1 cut(s)	62
BsiSI	CCGG	2 cut(s)	77, 142
BslI	CCNNNNNNNGG	2 cut(s)	161, 312
Bsp1407I	TGTACA	1 cut(s)	18
Bsp143I	GATC	4 cut(s)	157, 183, 189, 309
BspACI	CCGC	3 cut(s)	56, 58, 291
BspCNI	CTCAG	2 cut(s)	82, 172
BspFNI	CGCG	1 cut(s)	58
BspLI	GGNNCC	1 cut(s)	66
BspPI	GGATC	1 cut(s)	317
BsrFI	RCCGGY	1 cut(s)	76
BsrGI	TGTACA	1 cut(s)	18
BssAI	RCCGGY	1 cut(s)	76
BssECI	CCNNGG	1 cut(s)	56
BssMI	GATC	4 cut(s)	157, 183, 189, 309
BssNI	GRCGYC	1 cut(s)	303
Bst2UI	CCWGG	1 cut(s)	307
Bst4CI	ACNGT	1 cut(s)	254
BstACI	GRCGYC	1 cut(s)	303
BstAUI	TGTACA	1 cut(s)	18
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	2 cut(s)	90, 180
BstDSI	CCRYGG	1 cut(s)	56
BstENI	CCTNNNNNAGG	1 cut(s)	159
BstF5I	GGATG	3 cut(s)	151, 250, 332
BstFNI	CGCG	1 cut(s)	58
BstKTI	GATC	4 cut(s)	160, 186, 192, 312
BstMBI	GATC	4 cut(s)	157, 183, 189, 309
BstMCI	CGRYCG	1 cut(s)	62
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 288
BstNI	CCWGG	1 cut(s)	307
BstSCI	CCNGG	2 cut(s)	141, 305
BstUI	CGCG	1 cut(s)	58
BstV1I	GCAGC	2 cut(s)	246, 300
BstV2I	GAAGAC	1 cut(s)	44
BtgI	CCRYGG	1 cut(s)	56
BtsCI	GGATG	3 cut(s)	151, 250, 332
Cac8I	GCNNGC	1 cut(s)	78
Cfr10I	RCCGGY	1 cut(s)	76
Cfr13I	GGNCC	2 cut(s)	64, 139
Cfr42I	CCGCGG	1 cut(s)	59
CseI	GACGC	2 cut(s)	90, 311
Csp6I	GTAC	1 cut(s)	19
CviAII	CATG	3 cut(s)	269, 275, 299
CviJI	RGCY	5 cut(s)	76, 89, 230, 259, 317
CviKI_1	RGCY	5 cut(s)	76, 89, 230, 259, 317
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	2 cut(s)	90, 180
DpnI	GATC	4 cut(s)	159, 185, 191, 311
DpnII	GATC	4 cut(s)	157, 183, 189, 309
Eco47I	GGWCC	2 cut(s)	64, 139
EcoNI	CCTNNNNNAGG	1 cut(s)	159
EcoRII	CCWGG	1 cut(s)	305
FaeI	CATG	3 cut(s)	272, 278, 302
FaiI	YATR	6 cut(s)	120, 152, 218, 270, 276, 300
FatI	CATG	3 cut(s)	268, 274, 298
FbaI	TGATCA	2 cut(s)	157, 189
Fnu4HI	GCNGC	4 cut(s)	56, 260, 289, 292
FokI	GGATG	3 cut(s)	158, 257, 339
Fsp4HI	GCNGC	4 cut(s)	56, 260, 289, 292
FspBI	CTAG	2 cut(s)	45, 132
GluI	GCNGC	4 cut(s)	56, 260, 289, 292
HapII	CCGG	2 cut(s)	77, 142
HgaI	GACGC	2 cut(s)	90, 311
Hin1I	GRCGYC	1 cut(s)	303
Hin1II	CATG	3 cut(s)	272, 278, 302
HinfI	GANTC	1 cut(s)	202
HpaII	CCGG	2 cut(s)	77, 142
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	3 cut(s)	19, 139, 170
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	1 cut(s)	187
Hpy8I	GTNNAC	3 cut(s)	19, 139, 170
Hpy99I	CGWCG	1 cut(s)	106
HpyAV	CCTTC	1 cut(s)	316
HpyCH4III	ACNGT	1 cut(s)	254
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 288
HpyF3I	CTNAG	2 cut(s)	90, 180
Hsp92I	GRCGYC	1 cut(s)	303
Hsp92II	CATG	3 cut(s)	272, 278, 302
KroI	GCCGGC	1 cut(s)	76
KroNI	GCCGGC	1 cut(s)	78
Ksp22I	TGATCA	2 cut(s)	157, 189
KspI	CCGCGG	1 cut(s)	59
Kzo9I	GATC	4 cut(s)	157, 183, 189, 309
LpnPI	CCDG	6 cut(s)	7, 90, 155, 168, 292, 319
Lsp1109I	GCAGC	2 cut(s)	246, 300
MaeI	CTAG	2 cut(s)	45, 132
MalI	GATC	4 cut(s)	159, 185, 191, 311
MboI	GATC	4 cut(s)	157, 183, 189, 309
MboII	GAAGA	2 cut(s)	49, 211
MmeI	TCCRAC	2 cut(s)	42, 93
MnlI	CCTC	1 cut(s)	85
MroNI	GCCGGC	1 cut(s)	76
MseI	TTAA	1 cut(s)	233
MslI	CAYNNNNRTG	1 cut(s)	273
MspA1I	CMGCKG	2 cut(s)	58, 291
MspI	CCGG	2 cut(s)	77, 142
MspR9I	CCNGG	2 cut(s)	143, 307
MvaI	CCWGG	1 cut(s)	307
MvnI	CGCG	1 cut(s)	58
MwoI	GCNNNNNNNGC	2 cut(s)	86, 288
NaeI	GCCGGC	1 cut(s)	78
NciI	CCSGG	1 cut(s)	143
NdeII	GATC	4 cut(s)	157, 183, 189, 309
NgoMIV	GCCGGC	1 cut(s)	76
NlaIII	CATG	3 cut(s)	272, 278, 302
NlaIV	GGNNCC	1 cut(s)	66
PdiI	GCCGGC	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	202
PkrI	GCNGC	4 cut(s)	57, 261, 290, 293
Psp6I	CCWGG	1 cut(s)	305
PspGI	CCWGG	1 cut(s)	305
PspN4I	GGNNCC	1 cut(s)	66
PspPI	GGNCC	2 cut(s)	64, 139
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
RseI	CAYNNNNRTG	1 cut(s)	273
SacII	CCGCGG	1 cut(s)	59
SaqAI	TTAA	1 cut(s)	233
SatI	GCNGC	4 cut(s)	56, 260, 289, 292
Sau3AI	GATC	4 cut(s)	157, 183, 189, 309
Sau96I	GGNCC	2 cut(s)	64, 139
ScrFI	CCNGG	2 cut(s)	143, 307
SetI	ASST	1 cut(s)	26
Sfr303I	CCGCGG	1 cut(s)	59
SgrBI	CCGCGG	1 cut(s)	59
SinI	GGWCC	2 cut(s)	64, 139
SmiMI	CAYNNNNRTG	1 cut(s)	273
SpeI	ACTAGT	1 cut(s)	131
SsiI	CCGC	3 cut(s)	56, 58, 291
SspMI	CTAG	2 cut(s)	45, 132
StyD4I	CCNGG	2 cut(s)	141, 305
TaaI	ACNGT	1 cut(s)	254
TatI	WGTACW	1 cut(s)	18
TauI	GCSGC	2 cut(s)	58, 294
TfiI	GAWTC	1 cut(s)	202
Tru1I	TTAA	1 cut(s)	233
Tru9I	TTAA	1 cut(s)	233
TseI	GCWGC	2 cut(s)	259, 288
TspDTI	ATGAA	1 cut(s)	257
VpaK11BI	GGWCC	2 cut(s)	64, 139
XagI	CCTNNNNNAGG	1 cut(s)	159
XspI	CTAG	2 cut(s)	45, 132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.