Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0033467

Physical Location & Seq

Genomic Coordinates Forward (+)

42704066 .. 42721345

Gene Structure 17280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG219400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGAAAAACATGACTAGAATCAAAGAAAACATGAAAACAAACAATGGAAGAATTGAGGAACTCGGGTCCAGCGATGGTGAGAGCTTCTCTTCTCCTTATTCTCTGCGGAATATGCTGCCTCTTGTGTCTCTAGACGTTCCAGCGATCCTCGGCCTCCTCTCTCTCAAGACCAAGAGAGACAGGAGCTTCGATGAGCCGACGCCGCGTGGCTCGCCGAGAGTCAGTAAGGATTTGGGGACGATTATAAACGGGTCGTCGTCCGGGTTCTCAGGTTTCGATTCCGATGGCGGCGGCTCCAAGGGACATCCGCTGCCGTGGCTGTCGGTGTCGTCGGCGCAGGGAGTGGGAAATGATCAGGGGATTGGGTTGGGATCTGCGTCCGGATCGGTTTCCAGTGGGACTTCGTCCGGGTTCTCAAGATCTGATGAGCAGCCAATTATTACTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000186 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0080090 GO:0140096 GO:1901564 GO:1902531 GO:1902533

KEGG Pathways

Metabolic & Signaling

ko04010 ko04540 ko04912 map04010 map04540 map04912

Pfam Domains

Protein Families

Pkinase

Protein Analysis

149

Amino Acids

15.52

Weight (kDa)

5.84

Isoelectric Point (pI)

49.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0033467)

Species	Orthologous Gene IDs
rosa_samantha	Rh1DG219400 Rh5BG228200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	245
AccII	CGCG	1 cut(s)	205
AccIII	TCCGGA	1 cut(s)	380
AciI	CCGC	5 cut(s)	106, 203, 288, 291, 308
AclWI	GGATC	3 cut(s)	139, 379, 391
AcyI	GRCGYC	1 cut(s)	200
AluBI	AGCT	2 cut(s)	84, 186
AluI	AGCT	2 cut(s)	84, 186
Alw26I	GTCTC	2 cut(s)	132, 171
AlwI	GGATC	3 cut(s)	139, 379, 391
Ama87I	CYCGRG	1 cut(s)	62
Aor13HI	TCCGGA	1 cut(s)	380
AoxI	GGCC	1 cut(s)	151
ApeKI	GCWGC	3 cut(s)	115, 310, 430
ArsI	GACNNNNNNTTYG	2 cut(s)	170, 202
AspLEI	GCGC	1 cut(s)	337
AspS9I	GGNCC	1 cut(s)	66
AsuC2I	CCSGG	2 cut(s)	262, 409
AsuHPI	GGTGA	1 cut(s)	89
AvaI	CYCGRG	1 cut(s)	62
AvaII	GGWCC	1 cut(s)	66
BbvI	GCAGC	3 cut(s)	102, 297, 442
BccI	CCATC	2 cut(s)	68, 278
BceAI	ACGGC	1 cut(s)	298
BclI	TGATCA	1 cut(s)	352
BcnI	CCSGG	2 cut(s)	262, 409
BcoDI	GTCTC	2 cut(s)	132, 171
BfaI	CTAG	2 cut(s)	15, 131
BglII	AGATCT	1 cut(s)	419
BisI	GCNGC	6 cut(s)	116, 203, 289, 292, 311, 431
BlsI	GCNGC	6 cut(s)	117, 204, 290, 293, 312, 432
Bme1390I	CCNGG	2 cut(s)	262, 409
Bme18I	GGWCC	1 cut(s)	66
BmeT110I	CYCGRG	1 cut(s)	62
BmgT120I	GGNCC	1 cut(s)	66
BmiI	GGNNCC	2 cut(s)	67, 295
BmrFI	CCNGG	2 cut(s)	262, 409
BplI	GAGNNNNNCTC	2 cut(s)	71, 103
BpuEI	CTTGAG	2 cut(s)	149, 400
BpuMI	CCSGG	2 cut(s)	262, 409
BsaHI	GRCGYC	1 cut(s)	200
BsaJI	CCNNGG	3 cut(s)	148, 297, 314
BsaWI	WCCGGW	1 cut(s)	380
Bse1I	ACTGG	1 cut(s)	393
BseAI	TCCGGA	1 cut(s)	380
BseDI	CCNNGG	3 cut(s)	148, 297, 314
BseGI	GGATG	1 cut(s)	304
BseMII	CTCAG	1 cut(s)	282
BseNI	ACTGG	1 cut(s)	393
BseRI	GAGGAG	1 cut(s)	146
BseXI	GCAGC	3 cut(s)	102, 297, 442
Bsh1236I	CGCG	1 cut(s)	205
BshFI	GGCC	1 cut(s)	153
BsiHKCI	CYCGRG	1 cut(s)	62
BsiSI	CCGG	3 cut(s)	261, 381, 408
BslFI	GGGAC	3 cut(s)	250, 315, 412
BsmAI	GTCTC	2 cut(s)	132, 171
BsmFI	GGGAC	3 cut(s)	250, 315, 412
BsnI	GGCC	1 cut(s)	153
BsoBI	CYCGRG	1 cut(s)	62
Bsp13I	TCCGGA	1 cut(s)	380
Bsp143I	GATC	5 cut(s)	144, 352, 371, 383, 419
BspACI	CCGC	5 cut(s)	106, 203, 288, 291, 308
BspANI	GGCC	1 cut(s)	153
BspCNI	CTCAG	1 cut(s)	281
BspEI	TCCGGA	1 cut(s)	380
BspFNI	CGCG	1 cut(s)	205
BspLI	GGNNCC	2 cut(s)	67, 295
BspPI	GGATC	3 cut(s)	139, 379, 391
BsrI	ACTGG	1 cut(s)	393
BssECI	CCNNGG	3 cut(s)	148, 297, 314
BssMI	GATC	5 cut(s)	144, 352, 371, 383, 419
BssNI	GRCGYC	1 cut(s)	200
BssT1I	CCWWGG	1 cut(s)	297
Bst6I	CTCTTC	1 cut(s)	94
BstACI	GRCGYC	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	212
BstDEI	CTNAG	1 cut(s)	268
BstDSI	CCRYGG	1 cut(s)	314
BstF5I	GGATG	1 cut(s)	304
BstFNI	CGCG	1 cut(s)	205
BstHHI	GCGC	1 cut(s)	337
BstKTI	GATC	5 cut(s)	147, 355, 374, 386, 422
BstMAI	GTCTC	2 cut(s)	132, 171
BstMBI	GATC	5 cut(s)	144, 352, 371, 383, 419
BstMWI	GCNNNNNNNGC	4 cut(s)	112, 202, 211, 316
BstSCI	CCNGG	2 cut(s)	260, 407
BstUI	CGCG	1 cut(s)	205
BstV1I	GCAGC	3 cut(s)	102, 297, 442
BstX2I	RGATCY	2 cut(s)	371, 419
BstYI	RGATCY	2 cut(s)	371, 419
BsuRI	GGCC	1 cut(s)	153
BtgI	CCRYGG	1 cut(s)	314
BtgZI	GCGATG	1 cut(s)	87
BtsCI	GGATG	1 cut(s)	304
BtsIMutI	CAGTG	1 cut(s)	400
Cac8I	GCNNGC	1 cut(s)	212
CfoI	GCGC	1 cut(s)	337
Cfr13I	GGNCC	1 cut(s)	66
CseI	GACGC	2 cut(s)	208, 366
CviAII	CATG	2 cut(s)	10, 31
CviJI	RGCY	8 cut(s)	84, 153, 186, 196, 210, 294, 319, 433
CviKI_1	RGCY	8 cut(s)	84, 153, 186, 196, 210, 294, 319, 433
DdeI	CTNAG	1 cut(s)	268
DpnI	GATC	5 cut(s)	146, 354, 373, 385, 421
DpnII	GATC	5 cut(s)	144, 352, 371, 383, 419
Eam1104I	CTCTTC	1 cut(s)	94
EarI	CTCTTC	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	297
Eco47I	GGWCC	1 cut(s)	66
Eco88I	CYCGRG	1 cut(s)	62
EcoT14I	CCWWGG	1 cut(s)	297
ErhI	CCWWGG	1 cut(s)	297
FaeI	CATG	2 cut(s)	13, 34
FaiI	YATR	4 cut(s)	11, 32, 113, 245
FaqI	GGGAC	3 cut(s)	250, 315, 412
FatI	CATG	2 cut(s)	9, 30
FbaI	TGATCA	1 cut(s)	352
Fnu4HI	GCNGC	6 cut(s)	116, 203, 289, 292, 311, 431
FokI	GGATG	1 cut(s)	291
Fsp4HI	GCNGC	6 cut(s)	116, 203, 289, 292, 311, 431
FspBI	CTAG	2 cut(s)	15, 131
GlaI	GCGC	1 cut(s)	336
GluI	GCNGC	6 cut(s)	116, 203, 289, 292, 311, 431
HaeIII	GGCC	1 cut(s)	153
HapII	CCGG	3 cut(s)	261, 381, 408
HgaI	GACGC	2 cut(s)	208, 366
HhaI	GCGC	1 cut(s)	337
Hin1I	GRCGYC	1 cut(s)	200
Hin1II	CATG	2 cut(s)	13, 34
Hin6I	GCGC	1 cut(s)	335
HinP1I	GCGC	1 cut(s)	335
HinfI	GANTC	3 cut(s)	18, 219, 278
HpaII	CCGG	3 cut(s)	261, 381, 408
HphI	GGTGA	1 cut(s)	89
Hpy188I	TCNGA	2 cut(s)	283, 424
Hpy188III	TCNNGA	4 cut(s)	131, 166, 381, 417
Hpy99I	CGWCG	3 cut(s)	202, 259, 334
HpyCH4IV	ACGT	1 cut(s)	135
HpyF10VI	GCNNNNNNNGC	4 cut(s)	112, 202, 211, 316
HpyF3I	CTNAG	1 cut(s)	268
HpySE526I	ACGT	1 cut(s)	135
Hsp92I	GRCGYC	1 cut(s)	200
Hsp92II	CATG	2 cut(s)	13, 34
HspAI	GCGC	1 cut(s)	335
Kpn2I	TCCGGA	1 cut(s)	380
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	5 cut(s)	144, 352, 371, 383, 419
LmnI	GCTCC	2 cut(s)	183, 299
Lsp1109I	GCAGC	3 cut(s)	102, 297, 442
MaeI	CTAG	2 cut(s)	15, 131
MaeII	ACGT	1 cut(s)	135
MalI	GATC	5 cut(s)	146, 354, 373, 385, 421
MboI	GATC	5 cut(s)	144, 352, 371, 383, 419
MboII	GAAGA	2 cut(s)	60, 81
MflI	RGATCY	2 cut(s)	371, 419
MluCI	AATT	2 cut(s)	51, 435
MlyI	GAGTC	1 cut(s)	228
MnlI	CCTC	5 cut(s)	49, 129, 158, 164, 167
MroI	TCCGGA	1 cut(s)	380
MspA1I	CMGCKG	1 cut(s)	310
MspI	CCGG	3 cut(s)	261, 381, 408
MspR9I	CCNGG	2 cut(s)	262, 409
MvnI	CGCG	1 cut(s)	205
MwoI	GCNNNNNNNGC	4 cut(s)	112, 202, 211, 316
NciI	CCSGG	2 cut(s)	262, 409
NdeII	GATC	5 cut(s)	144, 352, 371, 383, 419
NlaIII	CATG	2 cut(s)	13, 34
NlaIV	GGNNCC	2 cut(s)	67, 295
NmeAIII	GCCGAG	2 cut(s)	129, 240
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PfeI	GAWTC	2 cut(s)	18, 278
PflFI	GACNNNGTC	1 cut(s)	403
PkrI	GCNGC	6 cut(s)	117, 204, 290, 293, 312, 432
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
PsiI	TTATAA	1 cut(s)	245
PspN4I	GGNNCC	2 cut(s)	67, 295
PspPI	GGNCC	1 cut(s)	66
PsuI	RGATCY	2 cut(s)	371, 419
PsyI	GACNNNGTC	1 cut(s)	403
SatI	GCNGC	6 cut(s)	116, 203, 289, 292, 311, 431
Sau3AI	GATC	5 cut(s)	144, 352, 371, 383, 419
Sau96I	GGNCC	1 cut(s)	66
SchI	GAGTC	1 cut(s)	228
ScrFI	CCNGG	2 cut(s)	262, 409
SetI	ASST	4 cut(s)	86, 138, 188, 274
SinI	GGWCC	1 cut(s)	66
SmlI	CTYRAG	2 cut(s)	164, 415
SmoI	CTYRAG	2 cut(s)	164, 415
Sse9I	AATT	2 cut(s)	51, 435
SsiI	CCGC	5 cut(s)	106, 203, 288, 291, 308
SspMI	CTAG	2 cut(s)	15, 131
StyD4I	CCNGG	2 cut(s)	260, 407
StyI	CCWWGG	1 cut(s)	297
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	2 cut(s)	189, 276
TasI	AATT	2 cut(s)	51, 435
TauI	GCSGC	3 cut(s)	205, 291, 294
TfiI	GAWTC	2 cut(s)	18, 278
TscAI	CASTG	1 cut(s)	400
TseI	GCWGC	3 cut(s)	115, 310, 430
TspDTI	ATGAA	2 cut(s)	17, 47
TspRI	CASTG	1 cut(s)	400
Tth111I	GACNNNGTC	1 cut(s)	403
VpaK11BI	GGWCC	1 cut(s)	66
XbaI	TCTAGA	1 cut(s)	130
XspI	CTAG	2 cut(s)	15, 131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.