Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0033467

Physical Location & Seq

Genomic Coordinates Forward (+)

26780389 .. 26785803

Gene Structure 5415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG228200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGAAATTAAATGTAACAAATATCCATACCTCTACGATCCTCGGCCTCCTCTCTCTCAAGACCAAGAGAGACAGGAGCTTCGATGAGCTGACACCGCGTGGCTCGCCGAGAGTCAGTAAGGATTTGGGGGCGGTTATAAACGGGTTGTCGTCCAGGTTCTCAGGTTTCGATTCCGATGGCGACAGCTCCAAGGGACATCCGCTGCCACGGCTGTCGGTGTCGTCGGCGCATGGAGTGGGAAATGATCAGGGGATTGGGTTGGGATCTGCGTCCGGATCGGTTTCCAGTGGGACTTCGTCGGTGTCGTCCTCTGATGAGCAACCAATTGTGCACCACCCGAGTCAATTTGGGGCTTTCAGAACATTCAGATCAATGCTTTCTTTTCAGAATAAGCCCACACATGGTGAAGGCTTGGAATGGGTGCCAGGCGTTGTAGCTGCTAGCCACGGATCAAACCAAAAAGTGGAATTGAAGGACATCAAAATTGTTGTGGCACTGATAGCAATTGCTCCAAATTTCAGCCCTTGTCTCTTCCTAATGTCAAAAAGAGTGCAAATGGAGAAGCATATCAAGACACTCATTGTCCTATCTCACTACTTGGAGAACAAAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000186 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0080090 GO:0140096 GO:1901564 GO:1902531 GO:1902533

KEGG Pathways

Metabolic & Signaling

ko04010 ko04540 ko04912 map04010 map04540 map04912

Pfam Domains

Protein Families

Pkinase

Protein Analysis

204

Amino Acids

21.83

Weight (kDa)

9.63

Isoelectric Point (pI)

35.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0033467)

Species	Orthologous Gene IDs
rosa_samantha	Rh1DG219400 Rh5BG228200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	137
AccB1I	GGYRCC	1 cut(s)	421
AccB7I	CCANNNNNTGG	1 cut(s)	463
AccII	CGCG	1 cut(s)	97
AccIII	TCCGGA	1 cut(s)	272
AciI	CCGC	3 cut(s)	95, 131, 200
AclWI	GGATC	4 cut(s)	31, 271, 283, 457
AcsI	RAATTY	1 cut(s)	514
AdeI	CACNNNGTG	2 cut(s)	98, 404
AfiI	CCNNNNNNNGG	2 cut(s)	401, 463
AgsI	TTSAA	1 cut(s)	472
AjnI	CCWGG	2 cut(s)	152, 424
AluBI	AGCT	4 cut(s)	78, 88, 186, 437
AluI	AGCT	4 cut(s)	78, 88, 186, 437
Alw21I	GWGCWC	1 cut(s)	333
Alw26I	GTCTC	2 cut(s)	63, 533
Alw44I	GTGCAC	1 cut(s)	329
AlwI	GGATC	4 cut(s)	31, 271, 283, 457
Ama87I	CYCGRG	1 cut(s)	337
Aor13HI	TCCGGA	1 cut(s)	272
AoxI	GGCC	1 cut(s)	43
ApaLI	GTGCAC	1 cut(s)	329
ApeKI	GCWGC	2 cut(s)	202, 437
ApoI	RAATTY	1 cut(s)	514
ArsI	GACNNNNNNTTYG	2 cut(s)	62, 94
AspLEI	GCGC	1 cut(s)	229
AsuHPI	GGTGA	1 cut(s)	416
AsuNHI	GCTAGC	1 cut(s)	440
AvaI	CYCGRG	1 cut(s)	337
BaeGI	GKGCMC	1 cut(s)	333
BanI	GGYRCC	1 cut(s)	421
Bbv12I	GWGCWC	1 cut(s)	333
BbvI	GCAGC	2 cut(s)	189, 424
BccI	CCATC	1 cut(s)	170
BceAI	ACGGC	1 cut(s)	224
BciT130I	CCWGG	2 cut(s)	154, 426
BclI	TGATCA	1 cut(s)	244
BcoDI	GTCTC	2 cut(s)	63, 533
BfaI	CTAG	1 cut(s)	441
BisI	GCNGC	2 cut(s)	203, 438
BlsI	GCNGC	2 cut(s)	204, 439
Bme1390I	CCNGG	2 cut(s)	154, 426
BmeT110I	CYCGRG	1 cut(s)	337
BmiI	GGNNCC	1 cut(s)	423
BmrFI	CCNGG	2 cut(s)	154, 426
BmtI	GCTAGC	1 cut(s)	444
BpuEI	CTTGAG	1 cut(s)	41
BsaJI	CCNNGG	4 cut(s)	40, 189, 206, 445
BsaWI	WCCGGW	1 cut(s)	272
Bsc4I	CCNNNNNNNGG	2 cut(s)	401, 463
Bse1I	ACTGG	1 cut(s)	285
BseAI	TCCGGA	1 cut(s)	272
BseBI	CCWGG	2 cut(s)	154, 426
BseDI	CCNNGG	4 cut(s)	40, 189, 206, 445
BseGI	GGATG	1 cut(s)	196
BseLI	CCNNNNNNNGG	2 cut(s)	401, 463
BseMII	CTCAG	1 cut(s)	174
BseNI	ACTGG	1 cut(s)	285
BseRI	GAGGAG	1 cut(s)	38
BseSI	GKGCMC	1 cut(s)	333
BseXI	GCAGC	2 cut(s)	189, 424
Bsh1236I	CGCG	1 cut(s)	97
BshFI	GGCC	1 cut(s)	45
BshNI	GGYRCC	1 cut(s)	421
BsiHKAI	GWGCWC	1 cut(s)	333
BsiHKCI	CYCGRG	1 cut(s)	337
BsiSI	CCGG	1 cut(s)	273
BslFI	GGGAC	2 cut(s)	207, 304
BslI	CCNNNNNNNGG	2 cut(s)	401, 463
BsmAI	GTCTC	2 cut(s)	63, 533
BsmFI	GGGAC	2 cut(s)	207, 304
BsnI	GGCC	1 cut(s)	45
BsoBI	CYCGRG	1 cut(s)	337
Bsp1286I	GDGCHC	1 cut(s)	333
Bsp13I	TCCGGA	1 cut(s)	272
Bsp143I	GATC	6 cut(s)	36, 244, 263, 275, 368, 449
BspACI	CCGC	3 cut(s)	95, 131, 200
BspANI	GGCC	1 cut(s)	45
BspCNI	CTCAG	1 cut(s)	173
BspEI	TCCGGA	1 cut(s)	272
BspFNI	CGCG	1 cut(s)	97
BspLI	GGNNCC	1 cut(s)	423
BspOI	GCTAGC	1 cut(s)	444
BspPI	GGATC	4 cut(s)	31, 271, 283, 457
BspT107I	GGYRCC	1 cut(s)	421
BsrI	ACTGG	1 cut(s)	285
BssECI	CCNNGG	4 cut(s)	40, 189, 206, 445
BssMI	GATC	6 cut(s)	36, 244, 263, 275, 368, 449
BssT1I	CCWWGG	1 cut(s)	189
Bst2UI	CCWGG	2 cut(s)	154, 426
Bst6I	CTCTTC	1 cut(s)	536
BstC8I	GCNNGC	2 cut(s)	104, 442
BstDEI	CTNAG	1 cut(s)	160
BstDSI	CCRYGG	2 cut(s)	206, 445
BstF5I	GGATG	1 cut(s)	196
BstFNI	CGCG	1 cut(s)	97
BstHHI	GCGC	1 cut(s)	229
BstKTI	GATC	6 cut(s)	39, 247, 266, 278, 371, 452
BstMAI	GTCTC	2 cut(s)	63, 533
BstMBI	GATC	6 cut(s)	36, 244, 263, 275, 368, 449
BstMWI	GCNNNNNNNGC	4 cut(s)	94, 103, 208, 500
BstNI	CCWGG	2 cut(s)	154, 426
BstSCI	CCNGG	2 cut(s)	152, 424
BstSLI	GKGCMC	1 cut(s)	333
BstUI	CGCG	1 cut(s)	97
BstV1I	GCAGC	2 cut(s)	189, 424
BstX2I	RGATCY	1 cut(s)	263
BstYI	RGATCY	1 cut(s)	263
BsuRI	GGCC	1 cut(s)	45
BtgI	CCRYGG	2 cut(s)	206, 445
BtsCI	GGATG	1 cut(s)	196
BtsIMutI	CAGTG	2 cut(s)	292, 494
Cac8I	GCNNGC	2 cut(s)	104, 442
CfoI	GCGC	1 cut(s)	229
CseI	GACGC	1 cut(s)	258
CviAII	CATG	2 cut(s)	230, 401
DdeI	CTNAG	1 cut(s)	160
DpnI	GATC	6 cut(s)	38, 246, 265, 277, 370, 451
DpnII	GATC	6 cut(s)	36, 244, 263, 275, 368, 449
DraIII	CACNNNGTG	2 cut(s)	98, 404
Eam1104I	CTCTTC	1 cut(s)	536
EarI	CTCTTC	1 cut(s)	536
Eco130I	CCWWGG	1 cut(s)	189
Eco88I	CYCGRG	1 cut(s)	337
EcoRII	CCWGG	2 cut(s)	152, 424
EcoT14I	CCWWGG	1 cut(s)	189
ErhI	CCWWGG	1 cut(s)	189
FaeI	CATG	2 cut(s)	233, 404
FaiI	YATR	6 cut(s)	27, 137, 231, 402, 567, 613
FaqI	GGGAC	2 cut(s)	207, 304
FatI	CATG	2 cut(s)	229, 400
FbaI	TGATCA	1 cut(s)	244
Fnu4HI	GCNGC	2 cut(s)	203, 438
FokI	GGATG	1 cut(s)	183
Fsp4HI	GCNGC	2 cut(s)	203, 438
FspBI	CTAG	1 cut(s)	441
GlaI	GCGC	1 cut(s)	228
GluI	GCNGC	2 cut(s)	203, 438
HaeIII	GGCC	1 cut(s)	45
HapII	CCGG	1 cut(s)	273
HgaI	GACGC	1 cut(s)	258
HhaI	GCGC	1 cut(s)	229
Hin1II	CATG	2 cut(s)	233, 404
Hin6I	GCGC	1 cut(s)	227
HinP1I	GCGC	1 cut(s)	227
HinfI	GANTC	3 cut(s)	111, 170, 340
HpaII	CCGG	1 cut(s)	273
HphI	GGTGA	1 cut(s)	416
Hpy166II	GTNNAC	1 cut(s)	331
Hpy188I	TCNGA	5 cut(s)	175, 313, 359, 368, 387
Hpy188III	TCNNGA	3 cut(s)	58, 273, 571
Hpy8I	GTNNAC	1 cut(s)	331
Hpy99I	CGWCG	2 cut(s)	226, 301
HpyAV	CCTTC	2 cut(s)	401, 466
HpyCH4V	TGCA	2 cut(s)	331, 553
HpyF10VI	GCNNNNNNNGC	4 cut(s)	94, 103, 208, 500
HpyF3I	CTNAG	1 cut(s)	160
Hsp92II	CATG	2 cut(s)	233, 404
HspAI	GCGC	1 cut(s)	227
Kpn2I	TCCGGA	1 cut(s)	272
Ksp22I	TGATCA	1 cut(s)	244
Kzo9I	GATC	6 cut(s)	36, 244, 263, 275, 368, 449
LmnI	GCTCC	3 cut(s)	75, 191, 514
LpnPI	CCDG	9 cut(s)	58, 139, 147, 166, 233, 286, 298, 411, 438
Lsp1109I	GCAGC	2 cut(s)	189, 424
MaeI	CTAG	1 cut(s)	441
MaeIII	GTNAC	1 cut(s)	13
MalI	GATC	6 cut(s)	38, 246, 265, 277, 370, 451
MboI	GATC	6 cut(s)	36, 244, 263, 275, 368, 449
MboII	GAAGA	1 cut(s)	523
MfeI	CAATTG	2 cut(s)	324, 504
MflI	RGATCY	1 cut(s)	263
MhlI	GDGCHC	1 cut(s)	333
MluCI	AATT	7 cut(s)	5, 324, 344, 467, 483, 504, 514
MlyI	GAGTC	2 cut(s)	120, 349
MnlI	CCTC	5 cut(s)	40, 50, 56, 59, 319
MroI	TCCGGA	1 cut(s)	272
MseI	TTAA	1 cut(s)	8
MspA1I	CMGCKG	1 cut(s)	202
MspI	CCGG	1 cut(s)	273
MspR9I	CCNGG	2 cut(s)	154, 426
MunI	CAATTG	2 cut(s)	324, 504
MvaI	CCWGG	2 cut(s)	154, 426
MvnI	CGCG	1 cut(s)	97
MwoI	GCNNNNNNNGC	4 cut(s)	94, 103, 208, 500
NdeII	GATC	6 cut(s)	36, 244, 263, 275, 368, 449
NheI	GCTAGC	1 cut(s)	440
NlaIII	CATG	2 cut(s)	233, 404
NlaIV	GGNNCC	1 cut(s)	423
NmeAIII	GCCGAG	2 cut(s)	21, 132
PcsI	WCGNNNNNNNCGW	1 cut(s)	302
PfeI	GAWTC	1 cut(s)	170
PflFI	GACNNNGTC	1 cut(s)	295
PflMI	CCANNNNNTGG	1 cut(s)	463
PkrI	GCNGC	2 cut(s)	204, 439
PleI	GAGTC	2 cut(s)	119, 348
PpsI	GAGTC	2 cut(s)	119, 348
PsiI	TTATAA	1 cut(s)	137
Psp6I	CCWGG	2 cut(s)	152, 424
PspGI	CCWGG	2 cut(s)	152, 424
PspN4I	GGNNCC	1 cut(s)	423
PsuI	RGATCY	1 cut(s)	263
PsyI	GACNNNGTC	1 cut(s)	295
SaqAI	TTAA	1 cut(s)	8
SatI	GCNGC	2 cut(s)	203, 438
Sau3AI	GATC	6 cut(s)	36, 244, 263, 275, 368, 449
SchI	GAGTC	2 cut(s)	120, 349
ScrFI	CCNGG	2 cut(s)	154, 426
SduI	GDGCHC	1 cut(s)	333
SetI	ASST	7 cut(s)	32, 80, 90, 158, 166, 188, 439
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	7 cut(s)	5, 324, 344, 467, 483, 504, 514
SsiI	CCGC	3 cut(s)	95, 131, 200
SspMI	CTAG	1 cut(s)	441
StyD4I	CCNGG	2 cut(s)	152, 424
StyI	CCWWGG	1 cut(s)	189
TaqI	TCGA	2 cut(s)	81, 168
TasI	AATT	7 cut(s)	5, 324, 344, 467, 483, 504, 514
TfiI	GAWTC	1 cut(s)	170
Tru1I	TTAA	1 cut(s)	8
Tru9I	TTAA	1 cut(s)	8
TscAI	CASTG	2 cut(s)	292, 501
TseI	GCWGC	2 cut(s)	202, 437
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	462
TspRI	CASTG	2 cut(s)	292, 501
Tth111I	GACNNNGTC	1 cut(s)	295
Van91I	CCANNNNNTGG	1 cut(s)	463
VneI	GTGCAC	1 cut(s)	329
XapI	RAATTY	1 cut(s)	514
XspI	CTAG	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.