Rh1DG269200

C-terminal binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0029474
Physical Location & Seq
Reverse (-)
48513378 .. 48515951
2574 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG269200.1

Sequence Viewer

Length: 294 bp
ATGGATGATACAATTCGATTAAGCCTGGGCCTTGTTTCCTTCGTCTCCTCCCGCGCCGAGGAGATTGCCGATACAGTTATGGCGCTGTTTCTAGGGTTGCTGAGGAGGACGCACTTGCTCTCGCGCCAAACGCTTTCGGCTTCCGGGTGGCTTGGTTCGGTTCAGCCGCTTTGCCGTGGGATGAGGCGGTGCCGGGGCTTGGTTTTGGGGATTATCGGTAGATCTGCGGCGGCGAGGTCTCTGGATACTAGGAGCTTGGCCTTCAAGATATCAGTGTGCTGTATTTTGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008360 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010482 GO:0010494 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030856 GO:0031128 GO:0031129 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042802 GO:0042803 GO:0042814 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0046983 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048468 GO:0048530 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051302 GO:0060284 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0090558 GO:0090567 GO:0090626 GO:0090696 GO:0090697 GO:0090698 GO:0098791 GO:0099402 GO:1905392 GO:1990904 GO:2000024 GO:2000026 GO:2000039
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2-Hacid_dh_C

Protein Analysis

97

Amino Acids

10.57

Weight (kDa)

11.02

Isoelectric Point (pI)

47.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029474)

Species Orthologous Gene IDs
pyrus_communis pycom16g11800
rosa_samantha Rh1DG269200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 189
AccII CGCG 2 cut(s) 54, 124
AciI CCGC 5 cut(s) 52, 167, 187, 227, 230
AfiI CCNNNNNNNGG 2 cut(s) 58, 199
AgsI TTSAA 1 cut(s) 265
AjnI CCWGG 1 cut(s) 24
AluBI AGCT 1 cut(s) 255
AluI AGCT 1 cut(s) 255
Alw26I GTCTC 2 cut(s) 49, 243
AoxI GGCC 2 cut(s) 28, 258
AspLEI GCGC 3 cut(s) 56, 85, 126
AspS9I GGNCC 1 cut(s) 28
AsuC2I CCSGG 2 cut(s) 145, 194
BanI GGYRCC 1 cut(s) 189
BbvCI CCTCAGC 1 cut(s) 101
BceAI ACGGC 1 cut(s) 159
BcgI CGANNNNNNTGC 2 cut(s) 47, 81
BciT130I CCWGG 1 cut(s) 26
BciVI GTATCC 1 cut(s) 238
BcnI CCSGG 2 cut(s) 145, 194
BcoDI GTCTC 2 cut(s) 49, 243
BfaI CTAG 2 cut(s) 92, 249
BfoI RGCGCY 1 cut(s) 86
BfuI GTATCC 1 cut(s) 238
BglII AGATCT 1 cut(s) 221
BisI GCNGC 3 cut(s) 167, 228, 231
BlsI GCNGC 3 cut(s) 168, 229, 232
Bme1390I CCNGG 3 cut(s) 26, 145, 194
BmgT120I GGNCC 1 cut(s) 28
BmiI GGNNCC 1 cut(s) 191
BmrFI CCNGG 3 cut(s) 26, 145, 194
Bpu10I CCTNAGC 1 cut(s) 101
BpuMI CCSGG 2 cut(s) 145, 194
BsaI GGTCTC 1 cut(s) 243
BsaJI CCNNGG 4 cut(s) 25, 57, 175, 193
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 199
BseBI CCWGG 1 cut(s) 26
BseDI CCNNGG 4 cut(s) 25, 57, 175, 193
BseGI GGATG 2 cut(s) 10, 186
BseLI CCNNNNNNNGG 2 cut(s) 58, 199
BseMII CTCAG 1 cut(s) 92
BseRI GAGGAG 3 cut(s) 37, 74, 118
Bsh1236I CGCG 2 cut(s) 54, 124
BshFI GGCC 2 cut(s) 30, 260
BshNI GGYRCC 1 cut(s) 189
BsiSI CCGG 2 cut(s) 144, 193
BslI CCNNNNNNNGG 2 cut(s) 58, 199
BsmAI GTCTC 2 cut(s) 49, 243
BsmBI CGTCTC 1 cut(s) 49
BsnI GGCC 2 cut(s) 30, 260
Bso31I GGTCTC 1 cut(s) 243
Bsp143I GATC 1 cut(s) 221
BspACI CCGC 5 cut(s) 52, 167, 187, 227, 230
BspANI GGCC 2 cut(s) 30, 260
BspCNI CTCAG 1 cut(s) 93
BspFNI CGCG 2 cut(s) 54, 124
BspLI GGNNCC 1 cut(s) 191
BspT107I GGYRCC 1 cut(s) 189
BspTNI GGTCTC 1 cut(s) 243
BssECI CCNNGG 4 cut(s) 25, 57, 175, 193
BssMI GATC 1 cut(s) 221
Bst2UI CCWGG 1 cut(s) 26
Bst4CI ACNGT 1 cut(s) 76
BstDEI CTNAG 1 cut(s) 101
BstDSI CCRYGG 1 cut(s) 175
BstF5I GGATG 2 cut(s) 10, 186
BstFNI CGCG 2 cut(s) 54, 124
BstH2I RGCGCY 1 cut(s) 86
BstHHI GCGC 3 cut(s) 56, 85, 126
BstKTI GATC 1 cut(s) 224
BstMAI GTCTC 2 cut(s) 49, 243
BstMBI GATC 1 cut(s) 221
BstMWI GCNNNNNNNGC 1 cut(s) 130
BstNI CCWGG 1 cut(s) 26
BstSCI CCNGG 3 cut(s) 24, 143, 192
BstUI CGCG 2 cut(s) 54, 124
BstX2I RGATCY 1 cut(s) 221
BstYI RGATCY 1 cut(s) 221
BsuI GTATCC 1 cut(s) 238
BsuRI GGCC 2 cut(s) 30, 260
BtgI CCRYGG 1 cut(s) 175
BtsCI GGATG 2 cut(s) 10, 186
BtsIMutI CAGTG 1 cut(s) 279
CfoI GCGC 3 cut(s) 56, 85, 126
Cfr13I GGNCC 1 cut(s) 28
CseI GACGC 1 cut(s) 118
CviJI RGCY 8 cut(s) 24, 30, 140, 151, 166, 198, 255, 260
CviKI_1 RGCY 8 cut(s) 24, 30, 140, 151, 166, 198, 255, 260
DdeI CTNAG 1 cut(s) 101
DpnI GATC 1 cut(s) 223
DpnII GATC 1 cut(s) 221
Eco31I GGTCTC 1 cut(s) 243
Eco32I GATATC 1 cut(s) 270
EcoRII CCWGG 1 cut(s) 24
EcoRV GATATC 1 cut(s) 270
Esp3I CGTCTC 1 cut(s) 49
FaiI YATR 1 cut(s) 80
FauI CCCGC 1 cut(s) 59
Fnu4HI GCNGC 3 cut(s) 167, 228, 231
FokI GGATG 2 cut(s) 17, 193
Fsp4HI GCNGC 3 cut(s) 167, 228, 231
FspBI CTAG 2 cut(s) 92, 249
GlaI GCGC 3 cut(s) 55, 84, 125
GluI GCNGC 3 cut(s) 167, 228, 231
HaeII RGCGCY 1 cut(s) 86
HaeIII GGCC 2 cut(s) 30, 260
HapII CCGG 2 cut(s) 144, 193
HgaI GACGC 1 cut(s) 118
HhaI GCGC 3 cut(s) 56, 85, 126
Hin6I GCGC 3 cut(s) 54, 83, 124
HinP1I GCGC 3 cut(s) 54, 83, 124
HpaII CCGG 2 cut(s) 144, 193
Hpy188III TCNNGA 2 cut(s) 242, 265
HpyAV CCTTC 2 cut(s) 49, 271
HpyCH4III ACNGT 1 cut(s) 76
HpyF10VI GCNNNNNNNGC 1 cut(s) 130
HpyF3I CTNAG 1 cut(s) 101
HspAI GCGC 3 cut(s) 54, 83, 124
Kzo9I GATC 1 cut(s) 221
LmnI GCTCC 1 cut(s) 252
LpnPI CCDG 5 cut(s) 11, 38, 157, 206, 227
MaeI CTAG 2 cut(s) 92, 249
MalI GATC 1 cut(s) 223
MboI GATC 1 cut(s) 221
MflI RGATCY 1 cut(s) 221
MluCI AATT 1 cut(s) 12
MnlI CCTC 6 cut(s) 52, 58, 96, 99, 177, 228
MseI TTAA 1 cut(s) 20
MspI CCGG 2 cut(s) 144, 193
MspR9I CCNGG 3 cut(s) 26, 145, 194
MvaI CCWGG 1 cut(s) 26
MvnI CGCG 2 cut(s) 54, 124
MwoI GCNNNNNNNGC 1 cut(s) 130
NciI CCSGG 2 cut(s) 145, 194
NdeII GATC 1 cut(s) 221
NlaIV GGNNCC 1 cut(s) 191
NmeAIII GCCGAG 1 cut(s) 82
PkrI GCNGC 3 cut(s) 168, 229, 232
Psp6I CCWGG 1 cut(s) 24
PspGI CCWGG 1 cut(s) 24
PspN4I GGNNCC 1 cut(s) 191
PspPI GGNCC 1 cut(s) 28
PsuI RGATCY 1 cut(s) 221
SaqAI TTAA 1 cut(s) 20
SatI GCNGC 3 cut(s) 167, 228, 231
Sau3AI GATC 1 cut(s) 221
Sau96I GGNCC 1 cut(s) 28
ScrFI CCNGG 3 cut(s) 26, 145, 194
SetI ASST 2 cut(s) 239, 257
Sse9I AATT 1 cut(s) 12
SsiI CCGC 5 cut(s) 52, 167, 187, 227, 230
SspMI CTAG 2 cut(s) 92, 249
StyD4I CCNGG 3 cut(s) 24, 143, 192
TaaI ACNGT 1 cut(s) 76
TaqI TCGA 1 cut(s) 16
TasI AATT 1 cut(s) 12
TauI GCSGC 3 cut(s) 169, 230, 233
Tru1I TTAA 1 cut(s) 20
Tru9I TTAA 1 cut(s) 20
TscAI CASTG 1 cut(s) 279
TspRI CASTG 1 cut(s) 279
XspI CTAG 2 cut(s) 92, 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.