Rh1DG333300
HSP70 Family

Heat shock cognate 70 kDa

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0034655
Physical Location & Seq
Forward (+)
55931597 .. 55951889
20293 bp
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UTR
Exon/CDS
Intron
Rh1DG333300.1

Sequence Viewer

Length: 282 bp
ATGGCTGGTAAAGAAGGTCATGCAATCGGAATTGATCTCGGCACAAAGTACTCATGTGTGGGAGTTTGGAAGCATGATAACAATAATGTTGATATCATAGTCAACGATCAGGGCAACAGGACCACGCCGTCATGTGTTGCCTTCACTGATACTGAGCTTCTGGCAGGAGAAGCAGCGTTTAATCAGGTCGTGAGAAACCCCGACAACTCCATCTTTGGACTATTAGGCGAATCAGCTGTAATGCAAATTCTTCACATCCCAAGGGAAGAAGGGAAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

93

Amino Acids

10.04

Weight (kDa)

5.17

Isoelectric Point (pI)

18.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 8 - 73 3.5e-22 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0034655)

Species Orthologous Gene IDs
rosa_samantha Rh1DG333300 Rh1DG333500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 127
AcsI RAATTY 1 cut(s) 246
AfaI GTAC 1 cut(s) 50
AluBI AGCT 2 cut(s) 157, 236
AluI AGCT 2 cut(s) 157, 236
ApeKI GCWGC 1 cut(s) 173
ApoI RAATTY 1 cut(s) 246
AspS9I GGNCC 1 cut(s) 120
AvaII GGWCC 1 cut(s) 120
BbvI GCAGC 1 cut(s) 185
BccI CCATC 1 cut(s) 218
BceAI ACGGC 1 cut(s) 112
BisI GCNGC 1 cut(s) 174
BlsI GCNGC 1 cut(s) 175
BmcAI AGTACT 1 cut(s) 50
Bme18I GGWCC 1 cut(s) 120
BmgT120I GGNCC 1 cut(s) 120
BsaJI CCNNGG 1 cut(s) 260
BseDI CCNNGG 1 cut(s) 260
BseGI GGATG 1 cut(s) 255
BseMII CTCAG 1 cut(s) 144
BseXI GCAGC 1 cut(s) 185
Bsp143I GATC 2 cut(s) 34, 106
BspCNI CTCAG 1 cut(s) 145
BssECI CCNNGG 1 cut(s) 260
BssMI GATC 2 cut(s) 34, 106
BssT1I CCWWGG 1 cut(s) 260
BstDEI CTNAG 1 cut(s) 153
BstF5I GGATG 1 cut(s) 255
BstKTI GATC 2 cut(s) 37, 109
BstMBI GATC 2 cut(s) 34, 106
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstV1I GCAGC 1 cut(s) 185
BtsCI GGATG 1 cut(s) 255
BtsIMutI CAGTG 1 cut(s) 144
Cfr13I GGNCC 1 cut(s) 120
Csp6I GTAC 1 cut(s) 49
CviAII CATG 4 cut(s) 20, 54, 74, 132
CviJI RGCY 3 cut(s) 5, 157, 236
CviKI_1 RGCY 3 cut(s) 5, 157, 236
CviQI GTAC 1 cut(s) 49
DdeI CTNAG 1 cut(s) 153
DpnI GATC 2 cut(s) 36, 108
DpnII GATC 2 cut(s) 34, 106
DrdI GACNNNNNNGTC 1 cut(s) 127
DseDI GACNNNNNNGTC 1 cut(s) 127
Eco130I CCWWGG 1 cut(s) 260
Eco32I GATATC 1 cut(s) 94
Eco47I GGWCC 1 cut(s) 120
EcoRV GATATC 1 cut(s) 94
EcoT14I CCWWGG 1 cut(s) 260
ErhI CCWWGG 1 cut(s) 260
FaeI CATG 4 cut(s) 23, 57, 77, 135
FaiI YATR 5 cut(s) 21, 55, 75, 98, 133
FatI CATG 4 cut(s) 19, 53, 73, 131
Fnu4HI GCNGC 1 cut(s) 174
FokI GGATG 1 cut(s) 242
Fsp4HI GCNGC 1 cut(s) 174
GluI GCNGC 1 cut(s) 174
Hin1II CATG 4 cut(s) 23, 57, 77, 135
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HinfI GANTC 1 cut(s) 230
Hpy166II GTNNAC 1 cut(s) 103
Hpy188I TCNGA 1 cut(s) 29
Hpy188III TCNNGA 1 cut(s) 190
Hpy8I GTNNAC 1 cut(s) 103
HpyAV CCTTC 3 cut(s) 8, 151, 263
HpyCH4V TGCA 2 cut(s) 23, 244
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
HpyF3I CTNAG 1 cut(s) 153
Hsp92II CATG 4 cut(s) 23, 57, 77, 135
Kzo9I GATC 2 cut(s) 34, 106
LpnPI CCDG 5 cut(s) 95, 103, 146, 150, 170
Lsp1109I GCAGC 1 cut(s) 185
MalI GATC 2 cut(s) 36, 108
MboI GATC 2 cut(s) 34, 106
MboII GAAGA 2 cut(s) 242, 278
MluCI AATT 2 cut(s) 30, 246
MseI TTAA 1 cut(s) 180
MspA1I CMGCKG 1 cut(s) 236
MwoI GCNNNNNNNGC 1 cut(s) 170
NdeII GATC 2 cut(s) 34, 106
NlaIII CATG 4 cut(s) 23, 57, 77, 135
NmeAIII GCCGAG 1 cut(s) 18
PfeI GAWTC 1 cut(s) 230
PkrI GCNGC 1 cut(s) 175
PspPI GGNCC 1 cut(s) 120
PvuII CAGCTG 1 cut(s) 236
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 1 cut(s) 174
Sau3AI GATC 2 cut(s) 34, 106
Sau96I GGNCC 1 cut(s) 120
ScaI AGTACT 1 cut(s) 50
SetI ASST 4 cut(s) 19, 159, 189, 238
SinI GGWCC 1 cut(s) 120
Sse9I AATT 2 cut(s) 30, 246
StyI CCWWGG 1 cut(s) 260
TasI AATT 2 cut(s) 30, 246
TatI WGTACW 1 cut(s) 48
TfiI GAWTC 1 cut(s) 230
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TscAI CASTG 1 cut(s) 151
TseI GCWGC 1 cut(s) 173
TspRI CASTG 1 cut(s) 151
VpaK11BI GGWCC 1 cut(s) 120
XapI RAATTY 1 cut(s) 246
ZrmI AGTACT 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.