Rh1DG333500
HSP70 Family

Heat shock cognate 70 kDa

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0034655
Physical Location & Seq
Forward (+)
55967926 .. 55970570
2645 bp
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UTR
Exon/CDS
Intron
Rh1DG333500.1

Sequence Viewer

Length: 270 bp
ATGGCTGGAATTGAAGGTCATGCAATCGGAATTGATCTCGGCACAAAGTACTCATGTGTGGGAGTTTGGAAGCATGATAACAATAATGTAGATATCATAGCGAACGATCAGGGCAACAGGACCACGCCATCATGTGTTGCTTTCACTGATACTGAGCTTCTGGTAGGAGAAGCAGCGTTTAATCAGGTCGTGAGAAACCCCGACAACTCCATCTTCGAATATAACTCATCCTTTGATCCTTACAAACTCAAGATCTCGTCTTCGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

89

Amino Acids

9.71

Weight (kDa)

4.62

Isoelectric Point (pI)

21.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 8 - 73 1.2e-23 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0034655)

Species Orthologous Gene IDs
rosa_samantha Rh1DG333300 Rh1DG333500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 230
AfaI GTAC 1 cut(s) 50
AgsI TTSAA 1 cut(s) 14
AluBI AGCT 1 cut(s) 157
AluI AGCT 1 cut(s) 157
AlwI GGATC 1 cut(s) 230
ApeKI GCWGC 1 cut(s) 173
AspS9I GGNCC 1 cut(s) 120
AsuII TTCGAA 1 cut(s) 216
AvaII GGWCC 1 cut(s) 120
BbsI GAAGAC 1 cut(s) 252
BbvI GCAGC 1 cut(s) 185
BccI CCATC 2 cut(s) 136, 218
BglII AGATCT 1 cut(s) 252
BisI GCNGC 1 cut(s) 174
BlsI GCNGC 1 cut(s) 175
BmcAI AGTACT 1 cut(s) 50
Bme18I GGWCC 1 cut(s) 120
BmgT120I GGNCC 1 cut(s) 120
BpiI GAAGAC 1 cut(s) 252
Bpu14I TTCGAA 1 cut(s) 216
BpuEI CTTGAG 1 cut(s) 233
BseGI GGATG 1 cut(s) 227
BseMII CTCAG 1 cut(s) 144
BseXI GCAGC 1 cut(s) 185
Bsp119I TTCGAA 1 cut(s) 216
Bsp143I GATC 4 cut(s) 34, 106, 235, 252
BspCNI CTCAG 1 cut(s) 145
BspPI GGATC 1 cut(s) 230
BspT104I TTCGAA 1 cut(s) 216
BssMI GATC 4 cut(s) 34, 106, 235, 252
BstBI TTCGAA 1 cut(s) 216
BstDEI CTNAG 1 cut(s) 153
BstF5I GGATG 1 cut(s) 227
BstKTI GATC 4 cut(s) 37, 109, 238, 255
BstMBI GATC 4 cut(s) 34, 106, 235, 252
BstV1I GCAGC 1 cut(s) 185
BstV2I GAAGAC 1 cut(s) 252
BstX2I RGATCY 1 cut(s) 252
BstYI RGATCY 1 cut(s) 252
BtsCI GGATG 1 cut(s) 227
BtsIMutI CAGTG 1 cut(s) 144
Cfr13I GGNCC 1 cut(s) 120
Csp6I GTAC 1 cut(s) 49
CviAII CATG 4 cut(s) 20, 54, 74, 132
CviJI RGCY 2 cut(s) 5, 157
CviKI_1 RGCY 2 cut(s) 5, 157
CviQI GTAC 1 cut(s) 49
DdeI CTNAG 1 cut(s) 153
DpnI GATC 4 cut(s) 36, 108, 237, 254
DpnII GATC 4 cut(s) 34, 106, 235, 252
Eco32I GATATC 1 cut(s) 94
Eco47I GGWCC 1 cut(s) 120
EcoRV GATATC 1 cut(s) 94
FaeI CATG 4 cut(s) 23, 57, 77, 135
FaiI YATR 6 cut(s) 21, 55, 75, 98, 133, 222
FatI CATG 4 cut(s) 19, 53, 73, 131
Fnu4HI GCNGC 1 cut(s) 174
FokI GGATG 1 cut(s) 214
Fsp4HI GCNGC 1 cut(s) 174
GluI GCNGC 1 cut(s) 174
Hin1II CATG 4 cut(s) 23, 57, 77, 135
Hpy188I TCNGA 2 cut(s) 29, 265
Hpy188III TCNNGA 2 cut(s) 190, 250
HpyAV CCTTC 1 cut(s) 8
HpyCH4V TGCA 1 cut(s) 23
HpyF3I CTNAG 1 cut(s) 153
Hsp92II CATG 4 cut(s) 23, 57, 77, 135
Kzo9I GATC 4 cut(s) 34, 106, 235, 252
LpnPI CCDG 4 cut(s) 95, 103, 146, 170
Lsp1109I GCAGC 1 cut(s) 185
MalI GATC 4 cut(s) 36, 108, 237, 254
MboI GATC 4 cut(s) 34, 106, 235, 252
MboII GAAGA 2 cut(s) 205, 252
MflI RGATCY 1 cut(s) 252
MluCI AATT 2 cut(s) 9, 30
MseI TTAA 1 cut(s) 180
NdeII GATC 4 cut(s) 34, 106, 235, 252
NlaIII CATG 4 cut(s) 23, 57, 77, 135
NmeAIII GCCGAG 1 cut(s) 18
NspV TTCGAA 1 cut(s) 216
PkrI GCNGC 1 cut(s) 175
PspPI GGNCC 1 cut(s) 120
PsuI RGATCY 1 cut(s) 252
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 1 cut(s) 174
Sau3AI GATC 4 cut(s) 34, 106, 235, 252
Sau96I GGNCC 1 cut(s) 120
ScaI AGTACT 1 cut(s) 50
SetI ASST 3 cut(s) 19, 159, 189
SfuI TTCGAA 1 cut(s) 216
SinI GGWCC 1 cut(s) 120
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
Sse9I AATT 2 cut(s) 9, 30
TaqI TCGA 1 cut(s) 216
TasI AATT 2 cut(s) 9, 30
TatI WGTACW 1 cut(s) 48
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TscAI CASTG 1 cut(s) 151
TseI GCWGC 1 cut(s) 173
TspRI CASTG 1 cut(s) 151
VpaK11BI GGWCC 1 cut(s) 120
ZrmI AGTACT 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.