Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0033830

Physical Location & Seq

Genomic Coordinates Forward (+)

14966913 .. 14976503

Gene Structure 9591 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG159100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGGAACCCGAGACATTGAAGCAGTACTGTCTTGGGACAATAGACTCAAAATAGCTATCGGAGTAGCTCGAGCCTTGACTTTCTTACACAATTTACCAAAACAAATCATACACAGAGATGTCAAATCCTCTAATATATTGCTTGATGAGATAAATGGCCAATATTCCTCCAAGGAAGCATTACAGACAGCAAAGGTTACCCTAAAATGCCTAGCATCAGATCCTAAAGGTCGTCCTTCGATGAAAGAAGTTGTGGATGCATTGGAGCAGATTCAGGCAATCAAGGAAAACTCAAAACAAACAGAACTTACCCCAACTACAAAATCTACTCCAAGTTCTCAATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

115

Amino Acids

12.69

Weight (kDa)

9.13

Isoelectric Point (pI)

44.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	14 - 50	1.3e-06	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0033830)

Species	Orthologous Gene IDs
rosa_samantha	Rh2AG159100 Rh2DG164400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	215
AcoI	YGGCCR	1 cut(s)	157
AfaI	GTAC	1 cut(s)	27
AgsI	TTSAA	1 cut(s)	20
AluBI	AGCT	2 cut(s)	56, 68
AluI	AGCT	2 cut(s)	56, 68
Alw26I	GTCTC	1 cut(s)	6
AlwI	GGATC	1 cut(s)	215
Ama87I	CYCGRG	2 cut(s)	9, 69
AoxI	GGCC	1 cut(s)	157
AvaI	CYCGRG	2 cut(s)	9, 69
BalI	TGGCCA	1 cut(s)	159
BcoDI	GTCTC	1 cut(s)	6
BfaI	CTAG	1 cut(s)	212
BmcAI	AGTACT	1 cut(s)	27
BmeT110I	CYCGRG	2 cut(s)	9, 69
BmiI	GGNNCC	1 cut(s)	7
BmsI	GCATC	2 cut(s)	224, 247
BsaJI	CCNNGG	1 cut(s)	171
BseDI	CCNNGG	1 cut(s)	171
BseGI	GGATG	1 cut(s)	262
BshFI	GGCC	1 cut(s)	159
BsiHKCI	CYCGRG	2 cut(s)	9, 69
BslFI	GGGAC	1 cut(s)	50
BsmAI	GTCTC	1 cut(s)	6
BsmFI	GGGAC	1 cut(s)	50
BsnI	GGCC	1 cut(s)	159
BsoBI	CYCGRG	2 cut(s)	9, 69
Bsp143I	GATC	1 cut(s)	220
BspANI	GGCC	1 cut(s)	159
BspLI	GGNNCC	1 cut(s)	7
BspPI	GGATC	1 cut(s)	215
BssECI	CCNNGG	1 cut(s)	171
BssMI	GATC	1 cut(s)	220
BssT1I	CCWWGG	1 cut(s)	171
Bst4CI	ACNGT	1 cut(s)	30
BstEII	GGTNACC	1 cut(s)	196
BstF5I	GGATG	1 cut(s)	262
BstKTI	GATC	1 cut(s)	223
BstMAI	GTCTC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	220
BstPI	GGTNACC	1 cut(s)	196
BstX2I	RGATCY	1 cut(s)	220
BstYI	RGATCY	1 cut(s)	220
BsuRI	GGCC	1 cut(s)	159
BtsCI	GGATG	1 cut(s)	262
Csp6I	GTAC	1 cut(s)	26
CviJI	RGCY	4 cut(s)	56, 68, 74, 159
CviKI_1	RGCY	4 cut(s)	56, 68, 74, 159
CviQI	GTAC	1 cut(s)	26
DpnI	GATC	1 cut(s)	222
DpnII	GATC	1 cut(s)	220
EaeI	YGGCCR	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	171
Eco88I	CYCGRG	2 cut(s)	9, 69
Eco91I	GGTNACC	1 cut(s)	196
EcoO65I	GGTNACC	1 cut(s)	196
EcoT14I	CCWWGG	1 cut(s)	171
EcoT22I	ATGCAT	1 cut(s)	262
ErhI	CCWWGG	1 cut(s)	171
FaiI	YATR	2 cut(s)	110, 137
FaqI	GGGAC	1 cut(s)	50
FokI	GGATG	1 cut(s)	269
FspBI	CTAG	1 cut(s)	212
HaeIII	GGCC	1 cut(s)	159
HinfI	GANTC	2 cut(s)	45, 271
Hpy188I	TCNGA	2 cut(s)	62, 220
Hpy188III	TCNNGA	1 cut(s)	345
HpyAV	CCTTC	1 cut(s)	246
HpyCH4III	ACNGT	1 cut(s)	30
HpyCH4V	TGCA	1 cut(s)	260
Kzo9I	GATC	1 cut(s)	220
LmnI	GCTCC	1 cut(s)	265
LpnPI	CCDG	1 cut(s)	260
LweI	GCATC	2 cut(s)	224, 247
MaeI	CTAG	1 cut(s)	212
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	1 cut(s)	222
MboI	GATC	1 cut(s)	220
MflI	RGATCY	1 cut(s)	220
MlsI	TGGCCA	1 cut(s)	159
MluCI	AATT	1 cut(s)	91
MluNI	TGGCCA	1 cut(s)	159
MlyI	GAGTC	1 cut(s)	39
MnlI	CCTC	2 cut(s)	139, 178
Mox20I	TGGCCA	1 cut(s)	159
Mph1103I	ATGCAT	1 cut(s)	262
MscI	TGGCCA	1 cut(s)	159
MslI	CAYNNNNRTG	1 cut(s)	117
Msp20I	TGGCCA	1 cut(s)	159
NdeII	GATC	1 cut(s)	220
NlaIV	GGNNCC	1 cut(s)	7
NsiI	ATGCAT	1 cut(s)	262
PaeR7I	CTCGAG	1 cut(s)	69
PfeI	GAWTC	1 cut(s)	271
PleI	GAGTC	1 cut(s)	39
PpsI	GAGTC	1 cut(s)	39
PspEI	GGTNACC	1 cut(s)	196
PspN4I	GGNNCC	1 cut(s)	7
PspXI	VCTCGAGB	1 cut(s)	69
PsuI	RGATCY	1 cut(s)	220
RsaI	GTAC	1 cut(s)	27
RsaNI	GTAC	1 cut(s)	26
RseI	CAYNNNNRTG	1 cut(s)	117
Sau3AI	GATC	1 cut(s)	220
ScaI	AGTACT	1 cut(s)	27
SchI	GAGTC	1 cut(s)	39
SetI	ASST	4 cut(s)	58, 70, 198, 232
SfaNI	GCATC	2 cut(s)	224, 247
Sfr274I	CTCGAG	1 cut(s)	69
SlaI	CTCGAG	1 cut(s)	69
SmiMI	CAYNNNNRTG	1 cut(s)	117
SmlI	CTYRAG	1 cut(s)	69
SmoI	CTYRAG	1 cut(s)	69
Sse9I	AATT	1 cut(s)	91
SspI	AATATT	1 cut(s)	164
SspMI	CTAG	1 cut(s)	212
StyI	CCWWGG	1 cut(s)	171
TaaI	ACNGT	1 cut(s)	30
TaqI	TCGA	2 cut(s)	70, 239
TasI	AATT	1 cut(s)	91
TatI	WGTACW	1 cut(s)	25
TfiI	GAWTC	1 cut(s)	271
TspDTI	ATGAA	1 cut(s)	257
XhoI	CTCGAG	1 cut(s)	69
XspI	CTAG	1 cut(s)	212
ZrmI	AGTACT	1 cut(s)	27
Zsp2I	ATGCAT	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.