Rh2AG160600

leucine-rich repeat family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0033831
Physical Location & Seq
Reverse (-)
15150649 .. 15153197
2549 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG160600.1

Sequence Viewer

Length: 504 bp
ATGGCAGGCTTGCAGAAGCTTAATATGTTGAACTTAGAGGGATGCAATGTTACGTCTGCATGTTTGGAGTCTATTTCAGCTCTTGGTGCCCTGGCTTACTTAAATCTCAACATATGCAGTTTATCTGATGAAGGATGTGATAAGTTTTCTGGCCTTACAAACTTGAAGGTTTTGAGCTTGGGATTCAACAGTATCACAGATGCATGTTTGGTGCAGCTAAAAGGTTTGACAAATTTGGAGAGCTTGAACCTGGATTCTTGTAAGATAGGTGACGAGGGGCTTGCGAACTGGGTAGGGTTTGTACTCTTGAAGAATTTGGAGTTGTCTGATACTGAAGTTATAAGCAATGGGATTCGTCATCTCTCAGGGCTAAAGAATCTGGAGAAATTAAACTTGTCCTATTACAGGTCTTACAAAACTGACACATCTGGATCTCATTGGCGCTTGTATTTCAGACTCTGGAGCAAACACTTTAAAACACTTCAAGAACCTTCAATCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_5 LRR_6 LRR_8

Protein Analysis

167

Amino Acids

18.47

Weight (kDa)

6.28

Isoelectric Point (pI)

26.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 5 - 134 4.8e-06 Leucine-rich repeat region
DUF7885 PF25372 10 - 96 1e-05 Leucine Rich Repeat Domain of unknown function (DUF7885)
LRR_8 PF13855 31 - 89 5.3e-08 Leucine rich repeat
LRR_4 PF12799 53 - 91 4.3e-06 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0033831)

Species Orthologous Gene IDs
rosa_samantha Rh2AG160600
rosa_wichuraiana Rw2G012570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 341
AccB1I GGYRCC 1 cut(s) 86
AclWI GGATC 1 cut(s) 439
AcsI RAATTY 2 cut(s) 232, 313
AcuI CTGAAG 1 cut(s) 354
AfaI GTAC 1 cut(s) 303
AfiI CCNNNNNNNGG 1 cut(s) 405
AgsI TTSAA 7 cut(s) 31, 166, 187, 247, 310, 485, 495
AjnI CCWGG 2 cut(s) 90, 249
AluBI AGCT 5 cut(s) 19, 80, 177, 217, 243
AluI AGCT 5 cut(s) 19, 80, 177, 217, 243
AlwI GGATC 1 cut(s) 439
AlwNI CAGNNNCTG 1 cut(s) 459
AoxI GGCC 1 cut(s) 151
ApeKI GCWGC 1 cut(s) 214
ApoI RAATTY 2 cut(s) 232, 313
AspLEI GCGC 1 cut(s) 444
AsuHPI GGTGA 1 cut(s) 281
BaeGI GKGCMC 1 cut(s) 91
BaeI ACNNNNGTAYC 2 cut(s) 321, 354
BanI GGYRCC 1 cut(s) 86
BbvI GCAGC 1 cut(s) 226
BcgI CGANNNNNNTGC 2 cut(s) 263, 297
BciT130I CCWGG 2 cut(s) 92, 251
BfoI RGCGCY 1 cut(s) 445
BisI GCNGC 1 cut(s) 215
BlsI GCNGC 1 cut(s) 216
Bme1390I CCNGG 2 cut(s) 92, 251
BmiI GGNNCC 1 cut(s) 88
BmrFI CCNGG 2 cut(s) 92, 251
BmrI ACTGGG 1 cut(s) 298
BmsI GCATC 2 cut(s) 32, 190
BmuI ACTGGG 1 cut(s) 298
BpmI CTGGAG 2 cut(s) 401, 481
BsaJI CCNNGG 1 cut(s) 90
Bsc4I CCNNNNNNNGG 1 cut(s) 405
Bse1I ACTGG 1 cut(s) 293
Bse3DI GCAATG 2 cut(s) 52, 352
BseBI CCWGG 2 cut(s) 92, 251
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 2 cut(s) 47, 140
BseLI CCNNNNNNNGG 1 cut(s) 405
BseMI GCAATG 2 cut(s) 52, 352
BseMII CTCAG 1 cut(s) 378
BseNI ACTGG 1 cut(s) 293
BseSI GKGCMC 1 cut(s) 91
BseXI GCAGC 1 cut(s) 226
BsgI GTGCAG 1 cut(s) 233
BshFI GGCC 1 cut(s) 153
BshNI GGYRCC 1 cut(s) 86
BslI CCNNNNNNNGG 1 cut(s) 405
BsnI GGCC 1 cut(s) 153
Bsp1286I GDGCHC 1 cut(s) 91
Bsp143I GATC 1 cut(s) 431
BspANI GGCC 1 cut(s) 153
BspCNI CTCAG 1 cut(s) 377
BspLI GGNNCC 1 cut(s) 88
BspPI GGATC 1 cut(s) 439
BspT107I GGYRCC 1 cut(s) 86
BsrDI GCAATG 2 cut(s) 52, 352
BsrI ACTGG 1 cut(s) 293
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 1 cut(s) 431
Bst2UI CCWGG 2 cut(s) 92, 251
Bst4CI ACNGT 1 cut(s) 191
BstC8I GCNNGC 3 cut(s) 7, 11, 282
BstDEI CTNAG 2 cut(s) 34, 364
BstENI CCTNNNNNAGG 1 cut(s) 403
BstF5I GGATG 2 cut(s) 47, 140
BstH2I RGCGCY 1 cut(s) 445
BstHHI GCGC 1 cut(s) 444
BstKTI GATC 1 cut(s) 434
BstMBI GATC 1 cut(s) 431
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstNI CCWGG 2 cut(s) 92, 251
BstNSI RCATGY 2 cut(s) 63, 207
BstSCI CCNGG 2 cut(s) 90, 249
BstSLI GKGCMC 1 cut(s) 91
BstV1I GCAGC 1 cut(s) 226
BstX2I RGATCY 1 cut(s) 431
BstYI RGATCY 1 cut(s) 431
BsuRI GGCC 1 cut(s) 153
BtsCI GGATG 2 cut(s) 47, 140
Cac8I GCNNGC 3 cut(s) 7, 11, 282
CaiI CAGNNNCTG 1 cut(s) 459
CfoI GCGC 1 cut(s) 444
Csp6I GTAC 1 cut(s) 302
CviAII CATG 2 cut(s) 60, 204
CviQI GTAC 1 cut(s) 302
DdeI CTNAG 2 cut(s) 34, 364
DpnI GATC 1 cut(s) 433
DpnII GATC 1 cut(s) 431
DraI TTTAAA 1 cut(s) 475
Eco57I CTGAAG 1 cut(s) 354
EcoNI CCTNNNNNAGG 1 cut(s) 403
EcoRII CCWGG 2 cut(s) 90, 249
EcoT22I ATGCAT 1 cut(s) 205
FaeI CATG 2 cut(s) 63, 207
FaiI YATR 6 cut(s) 26, 61, 113, 115, 205, 341
FatI CATG 2 cut(s) 59, 203
FauNDI CATATG 1 cut(s) 113
Fnu4HI GCNGC 1 cut(s) 215
FokI GGATG 2 cut(s) 54, 147
Fsp4HI GCNGC 1 cut(s) 215
GlaI GCGC 1 cut(s) 443
GluI GCNGC 1 cut(s) 215
GsuI CTGGAG 2 cut(s) 401, 481
HaeII RGCGCY 1 cut(s) 445
HaeIII GGCC 1 cut(s) 153
HhaI GCGC 1 cut(s) 444
Hin1II CATG 2 cut(s) 63, 207
Hin6I GCGC 1 cut(s) 442
HinP1I GCGC 1 cut(s) 442
HindIII AAGCTT 1 cut(s) 17
HinfI GANTC 6 cut(s) 68, 183, 254, 352, 376, 456
HphI GGTGA 1 cut(s) 281
Hpy188I TCNGA 3 cut(s) 127, 328, 455
Hpy188III TCNNGA 5 cut(s) 307, 380, 429, 460, 485
HpyAV CCTTC 3 cut(s) 125, 160, 501
HpyCH4III ACNGT 1 cut(s) 191
HpyCH4IV ACGT 1 cut(s) 53
HpyCH4V TGCA 6 cut(s) 13, 45, 59, 117, 203, 214
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 2 cut(s) 34, 364
HpySE526I ACGT 1 cut(s) 53
Hsp92II CATG 2 cut(s) 63, 207
HspAI GCGC 1 cut(s) 442
Kzo9I GATC 1 cut(s) 431
LmnI GCTCC 1 cut(s) 462
Lsp1109I GCAGC 1 cut(s) 226
LweI GCATC 2 cut(s) 32, 190
MaeII ACGT 1 cut(s) 53
MaeIII GTNAC 2 cut(s) 49, 269
MalI GATC 1 cut(s) 433
MboI GATC 1 cut(s) 431
MboII GAAGA 1 cut(s) 322
MflI RGATCY 1 cut(s) 431
MhlI GDGCHC 1 cut(s) 91
MluCI AATT 3 cut(s) 232, 313, 386
MlyI GAGTC 2 cut(s) 77, 450
MnlI CCTC 2 cut(s) 31, 268
Mph1103I ATGCAT 1 cut(s) 205
MseI TTAA 5 cut(s) 21, 101, 389, 474, 502
MspR9I CCNGG 2 cut(s) 92, 251
MvaI CCWGG 2 cut(s) 92, 251
MwoI GCNNNNNNNGC 1 cut(s) 86
NdeI CATATG 1 cut(s) 113
NdeII GATC 1 cut(s) 431
NlaIII CATG 2 cut(s) 63, 207
NlaIV GGNNCC 1 cut(s) 88
NmuCI GTSAC 1 cut(s) 269
NsiI ATGCAT 1 cut(s) 205
NspI RCATGY 2 cut(s) 63, 207
PfeI GAWTC 4 cut(s) 183, 254, 352, 376
PkrI GCNGC 1 cut(s) 216
PleI GAGTC 2 cut(s) 76, 450
PpsI GAGTC 2 cut(s) 76, 450
PsiI TTATAA 1 cut(s) 341
Psp6I CCWGG 2 cut(s) 90, 249
PspGI CCWGG 2 cut(s) 90, 249
PspN4I GGNNCC 1 cut(s) 88
PstNI CAGNNNCTG 1 cut(s) 459
PsuI RGATCY 1 cut(s) 431
RsaI GTAC 1 cut(s) 303
RsaNI GTAC 1 cut(s) 302
SaqAI TTAA 5 cut(s) 21, 101, 389, 474, 502
SatI GCNGC 1 cut(s) 215
Sau3AI GATC 1 cut(s) 431
SchI GAGTC 2 cut(s) 77, 450
ScrFI CCNGG 2 cut(s) 92, 251
SduI GDGCHC 1 cut(s) 91
SfaNI GCATC 2 cut(s) 32, 190
Sse9I AATT 3 cut(s) 232, 313, 386
StyD4I CCNGG 2 cut(s) 90, 249
TaaI ACNGT 1 cut(s) 191
TaiI ACGT 1 cut(s) 56
TasI AATT 3 cut(s) 232, 313, 386
TatI WGTACW 1 cut(s) 301
TfiI GAWTC 4 cut(s) 183, 254, 352, 376
Tru1I TTAA 5 cut(s) 21, 101, 389, 474, 502
Tru9I TTAA 5 cut(s) 21, 101, 389, 474, 502
TseFI GTSAC 1 cut(s) 269
TseI GCWGC 1 cut(s) 214
Tsp45I GTSAC 1 cut(s) 269
TspDTI ATGAA 1 cut(s) 144
XagI CCTNNNNNAGG 1 cut(s) 403
XapI RAATTY 2 cut(s) 232, 313
XceI RCATGY 2 cut(s) 63, 207
Zsp2I ATGCAT 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.