Rw2G012570

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0033831
Physical Location & Seq
Reverse (-)
13117280 .. 13124484
7205 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G012570.1

Sequence Viewer

Length: 480 bp
ATGGCAGACTTGCAGAAGCTTAATATGTTGAACTTAGAGGGATGCAATGTTACGTCTGCATGTTTGGAGTCTATTTCAGGTTTGACAAATTTGGAGAGCTTGAACCTGGATTCTTGTAAGATAGGTGACGAGGGGCTTGCGAACTTGGTAGGTTTACTACGAGATGACAGGTTTGTACTCTTGAAGAATTTGGAGTTGTCTGATACTGAAGTTATAAGCAATGAGATTCGTCATCTCTCAGGTCTTACAAAACTGACACATCTGGATCTCTTTGGCGCTAGTATTTCAGACTCTGGAGCAAACACTTTAAAACGTTTGACTGCATTGGTTTCATTAAACATTTCAAATTCACGCATTACCAATGCGGGATTGCAGTATTTAAAGCCTTTGAAGAATCTACGTTCCTTAACCTTGGAGTCTACTGCATCTGAAATCAGGAAGCTACAGTCTGCTGCCCTCCCTAATCTTGTAAGCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

17.2

Weight (kDa)

5.67

Isoelectric Point (pI)

38.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 3 - 155 4.6e-06 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0033831)

Species Orthologous Gene IDs
rosa_samantha Rh2AG160600
rosa_wichuraiana Rw2G012570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 215
AccI GTMKAC 1 cut(s) 419
AciI CCGC 1 cut(s) 365
AclI AACGTT 1 cut(s) 313
AclWI GGATC 1 cut(s) 273
AcsI RAATTY 3 cut(s) 88, 187, 346
AcuI CTGAAG 1 cut(s) 228
AfaI GTAC 1 cut(s) 177
AgsI TTSAA 5 cut(s) 31, 103, 184, 345, 391
AjnI CCWGG 1 cut(s) 105
AluBI AGCT 4 cut(s) 19, 99, 442, 474
AluI AGCT 4 cut(s) 19, 99, 442, 474
AlwI GGATC 1 cut(s) 273
AlwNI CAGNNNCTG 1 cut(s) 293
ApeKI GCWGC 1 cut(s) 452
ApoI RAATTY 3 cut(s) 88, 187, 346
AspLEI GCGC 1 cut(s) 278
AsuHPI GGTGA 1 cut(s) 137
BaeI ACNNNNGTAYC 2 cut(s) 195, 228
BbvI GCAGC 1 cut(s) 439
BcgI CGANNNNNNTGC 2 cut(s) 119, 153
BciT130I CCWGG 1 cut(s) 107
BfaI CTAG 1 cut(s) 279
BfmI CTRYAG 1 cut(s) 443
BfoI RGCGCY 1 cut(s) 279
BisI GCNGC 1 cut(s) 453
BlsI GCNGC 1 cut(s) 454
Bme1390I CCNGG 1 cut(s) 107
BmrFI CCNGG 1 cut(s) 107
BmsI GCATC 2 cut(s) 32, 434
BpmI CTGGAG 1 cut(s) 315
BsaJI CCNNGG 1 cut(s) 411
Bse3DI GCAATG 2 cut(s) 52, 226
BseBI CCWGG 1 cut(s) 107
BseDI CCNNGG 1 cut(s) 411
BseGI GGATG 1 cut(s) 47
BseMI GCAATG 2 cut(s) 52, 226
BseMII CTCAG 1 cut(s) 252
BseXI GCAGC 1 cut(s) 439
Bsp143I GATC 1 cut(s) 265
BspACI CCGC 1 cut(s) 365
BspCNI CTCAG 1 cut(s) 251
BspPI GGATC 1 cut(s) 273
BsrDI GCAATG 2 cut(s) 52, 226
BssECI CCNNGG 1 cut(s) 411
BssMI GATC 1 cut(s) 265
BssT1I CCWWGG 1 cut(s) 411
Bst2UI CCWGG 1 cut(s) 107
Bst4CI ACNGT 1 cut(s) 447
BstC8I GCNNGC 1 cut(s) 138
BstDEI CTNAG 2 cut(s) 34, 238
BstF5I GGATG 1 cut(s) 47
BstH2I RGCGCY 1 cut(s) 279
BstHHI GCGC 1 cut(s) 278
BstKTI GATC 1 cut(s) 268
BstMBI GATC 1 cut(s) 265
BstNI CCWGG 1 cut(s) 107
BstNSI RCATGY 1 cut(s) 63
BstSCI CCNGG 1 cut(s) 105
BstSFI CTRYAG 1 cut(s) 443
BstV1I GCAGC 1 cut(s) 439
BstX2I RGATCY 1 cut(s) 265
BstYI RGATCY 1 cut(s) 265
BtsCI GGATG 1 cut(s) 47
Cac8I GCNNGC 1 cut(s) 138
CaiI CAGNNNCTG 1 cut(s) 293
CfoI GCGC 1 cut(s) 278
Csp6I GTAC 1 cut(s) 176
CviAII CATG 1 cut(s) 60
CviJI RGCY 6 cut(s) 19, 99, 136, 385, 442, 474
CviKI_1 RGCY 6 cut(s) 19, 99, 136, 385, 442, 474
CviQI GTAC 1 cut(s) 176
DdeI CTNAG 2 cut(s) 34, 238
DpnI GATC 1 cut(s) 267
DpnII GATC 1 cut(s) 265
DraI TTTAAA 2 cut(s) 309, 381
Eco130I CCWWGG 1 cut(s) 411
Eco57I CTGAAG 1 cut(s) 228
EcoRII CCWGG 1 cut(s) 105
EcoT14I CCWWGG 1 cut(s) 411
ErhI CCWWGG 1 cut(s) 411
FaeI CATG 1 cut(s) 63
FaiI YATR 3 cut(s) 26, 61, 215
FatI CATG 1 cut(s) 59
FauI CCCGC 1 cut(s) 358
FblI GTMKAC 1 cut(s) 419
Fnu4HI GCNGC 1 cut(s) 453
FokI GGATG 1 cut(s) 54
Fsp4HI GCNGC 1 cut(s) 453
FspBI CTAG 1 cut(s) 279
GlaI GCGC 1 cut(s) 277
GluI GCNGC 1 cut(s) 453
GsuI CTGGAG 1 cut(s) 315
HaeII RGCGCY 1 cut(s) 279
HhaI GCGC 1 cut(s) 278
Hin1II CATG 1 cut(s) 63
Hin6I GCGC 1 cut(s) 276
HinP1I GCGC 1 cut(s) 276
HindIII AAGCTT 2 cut(s) 17, 472
HinfI GANTC 6 cut(s) 68, 110, 226, 290, 394, 416
HphI GGTGA 1 cut(s) 137
Hpy166II GTNNAC 2 cut(s) 155, 420
Hpy188I TCNGA 3 cut(s) 202, 289, 430
Hpy188III TCNNGA 4 cut(s) 181, 263, 294, 436
Hpy8I GTNNAC 2 cut(s) 155, 420
HpyCH4III ACNGT 1 cut(s) 447
HpyCH4IV ACGT 3 cut(s) 53, 313, 400
HpyCH4V TGCA 6 cut(s) 13, 45, 59, 323, 373, 425
HpyF3I CTNAG 2 cut(s) 34, 238
HpySE526I ACGT 3 cut(s) 53, 313, 400
Hsp92II CATG 1 cut(s) 63
HspAI GCGC 1 cut(s) 276
Kzo9I GATC 1 cut(s) 265
LmnI GCTCC 1 cut(s) 296
LpnPI CCDG 8 cut(s) 63, 92, 119, 154, 225, 248, 279, 421
Lsp1109I GCAGC 1 cut(s) 439
LweI GCATC 2 cut(s) 32, 434
MaeI CTAG 1 cut(s) 279
MaeII ACGT 3 cut(s) 53, 313, 400
MaeIII GTNAC 2 cut(s) 49, 125
MalI GATC 1 cut(s) 267
MboI GATC 1 cut(s) 265
MboII GAAGA 2 cut(s) 196, 403
MflI RGATCY 1 cut(s) 265
MluCI AATT 3 cut(s) 88, 187, 346
MlyI GAGTC 3 cut(s) 77, 284, 425
MnlI CCTC 3 cut(s) 31, 124, 467
MseI TTAA 5 cut(s) 21, 308, 335, 380, 407
MspR9I CCNGG 1 cut(s) 107
MvaI CCWGG 1 cut(s) 107
NdeII GATC 1 cut(s) 265
NlaIII CATG 1 cut(s) 63
NmuCI GTSAC 1 cut(s) 125
NspI RCATGY 1 cut(s) 63
PfeI GAWTC 3 cut(s) 110, 226, 394
PkrI GCNGC 1 cut(s) 454
PleI GAGTC 3 cut(s) 76, 284, 424
PpsI GAGTC 3 cut(s) 76, 284, 424
PsiI TTATAA 1 cut(s) 215
Psp1406I AACGTT 1 cut(s) 313
Psp6I CCWGG 1 cut(s) 105
PspGI CCWGG 1 cut(s) 105
PstNI CAGNNNCTG 1 cut(s) 293
PsuI RGATCY 1 cut(s) 265
RsaI GTAC 1 cut(s) 177
RsaNI GTAC 1 cut(s) 176
SaqAI TTAA 5 cut(s) 21, 308, 335, 380, 407
SatI GCNGC 1 cut(s) 453
Sau3AI GATC 1 cut(s) 265
SchI GAGTC 3 cut(s) 77, 284, 425
ScrFI CCNGG 1 cut(s) 107
SfaNI GCATC 2 cut(s) 32, 434
SfcI CTRYAG 1 cut(s) 443
Sse9I AATT 3 cut(s) 88, 187, 346
SsiI CCGC 1 cut(s) 365
SspMI CTAG 1 cut(s) 279
StyD4I CCNGG 1 cut(s) 105
StyI CCWWGG 1 cut(s) 411
TaaI ACNGT 1 cut(s) 447
TaiI ACGT 3 cut(s) 56, 316, 403
TasI AATT 3 cut(s) 88, 187, 346
TatI WGTACW 1 cut(s) 175
TfiI GAWTC 3 cut(s) 110, 226, 394
Tru1I TTAA 5 cut(s) 21, 308, 335, 380, 407
Tru9I TTAA 5 cut(s) 21, 308, 335, 380, 407
TseFI GTSAC 1 cut(s) 125
TseI GCWGC 1 cut(s) 452
Tsp45I GTSAC 1 cut(s) 125
TspDTI ATGAA 1 cut(s) 321
XapI RAATTY 3 cut(s) 88, 187, 346
XceI RCATGY 1 cut(s) 63
XmiI GTMKAC 1 cut(s) 419
XspI CTAG 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.