Rh2AG185400

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
18109632 .. 18111357
1726 bp
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UTR
Exon/CDS
Intron
Rh2AG185400.1

Sequence Viewer

Length: 348 bp
ATGGAACCTGCAAAAATTGATTGGAAAAACTTGGAATGGAGATTTGTAGAGGACAAAGCCTACGAGCATATCAACGTCCCCAAGTGGTTTGATTTCTTGAACCCCAATGACAACCTTGTCAACGACCACGCCTGGTTATGCACTCCCAGTCAGCTTTTTCCTCCTCCTTCTTCTTCTTGTTTTTTTCTTTCTCTATTTCTTATTAACACAAGAATCATACATGTATTACAGAGTGCAATCACCCAAAGACGGTCGCAGATTTTCTCAGATCCTCACCTTTCAAGGGTTTCGAGCCCATCTGATGTTTCTGGGCTCTTTCCGCTTGGTGATAAAGTCCAAAGGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

13.43

Weight (kDa)

6.39

Isoelectric Point (pI)

67.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025539)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002571.1_g000009
rosa_samantha Rh2AG185400 Rh2DG191600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 116
Acc36I ACCTGC 1 cut(s) 16
AciI CCGC 1 cut(s) 320
AclWI GGATC 1 cut(s) 263
AfiI CCNNNNNNNGG 2 cut(s) 249, 283
AflIII ACRYGT 1 cut(s) 220
AgsI TTSAA 2 cut(s) 100, 282
AjnI CCWGG 1 cut(s) 131
AluBI AGCT 1 cut(s) 154
AluI AGCT 1 cut(s) 154
AlwI GGATC 1 cut(s) 263
AsuHPI GGTGA 3 cut(s) 232, 266, 338
BanII GRGCYC 2 cut(s) 296, 315
BccI CCATC 1 cut(s) 304
BciT130I CCWGG 1 cut(s) 133
BfuAI ACCTGC 1 cut(s) 16
Bme1390I CCNGG 1 cut(s) 133
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 133
BmrI ACTGGG 1 cut(s) 141
BmuI ACTGGG 1 cut(s) 141
Bsc4I CCNNNNNNNGG 2 cut(s) 249, 283
Bse1I ACTGG 1 cut(s) 147
BseBI CCWGG 1 cut(s) 133
BseLI CCNNNNNNNGG 2 cut(s) 249, 283
BseMII CTCAG 1 cut(s) 279
BseNI ACTGG 1 cut(s) 147
BseRI GAGGAG 1 cut(s) 153
Bsh1285I CGRYCG 1 cut(s) 254
BsiEI CGRYCG 1 cut(s) 254
BslFI GGGAC 1 cut(s) 62
BslI CCNNNNNNNGG 2 cut(s) 249, 283
BsmFI GGGAC 1 cut(s) 62
Bsp1286I GDGCHC 2 cut(s) 296, 315
Bsp143I GATC 1 cut(s) 268
BspACI CCGC 1 cut(s) 320
BspCNI CTCAG 1 cut(s) 278
BspLI GGNNCC 1 cut(s) 6
BspMI ACCTGC 1 cut(s) 16
BspPI GGATC 1 cut(s) 263
BsrI ACTGG 1 cut(s) 147
BssMI GATC 1 cut(s) 268
Bst2UI CCWGG 1 cut(s) 133
Bst4CI ACNGT 1 cut(s) 252
BstDEI CTNAG 1 cut(s) 265
BstKTI GATC 1 cut(s) 271
BstMBI GATC 1 cut(s) 268
BstMCI CGRYCG 1 cut(s) 254
BstMWI GCNNNNNNNGC 1 cut(s) 319
BstNI CCWGG 1 cut(s) 133
BstNSI RCATGY 1 cut(s) 224
BstSCI CCNGG 1 cut(s) 131
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
BveI ACCTGC 1 cut(s) 16
CviAII CATG 1 cut(s) 221
CviJI RGCY 4 cut(s) 59, 154, 294, 313
CviKI_1 RGCY 4 cut(s) 59, 154, 294, 313
DdeI CTNAG 1 cut(s) 265
DpnI GATC 1 cut(s) 270
DpnII GATC 1 cut(s) 268
DrdI GACNNNNNNGTC 1 cut(s) 116
DseDI GACNNNNNNGTC 1 cut(s) 116
Eco24I GRGCYC 2 cut(s) 296, 315
EcoRII CCWGG 1 cut(s) 131
EcoT38I GRGCYC 2 cut(s) 296, 315
FaeI CATG 1 cut(s) 224
FaiI YATR 4 cut(s) 69, 139, 218, 222
FaqI GGGAC 1 cut(s) 62
FatI CATG 1 cut(s) 220
FriOI GRGCYC 2 cut(s) 296, 315
Hin1II CATG 1 cut(s) 224
HincII GTYRAC 1 cut(s) 121
HindII GTYRAC 1 cut(s) 121
HinfI GANTC 1 cut(s) 213
HphI GGTGA 3 cut(s) 232, 266, 338
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 2 cut(s) 268, 301
Hpy188III TCNNGA 1 cut(s) 97
Hpy8I GTNNAC 1 cut(s) 121
HpyAV CCTTC 1 cut(s) 177
HpyCH4III ACNGT 1 cut(s) 252
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 3 cut(s) 11, 141, 236
HpyF10VI GCNNNNNNNGC 1 cut(s) 319
HpyF3I CTNAG 1 cut(s) 265
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 1 cut(s) 224
Kzo9I GATC 1 cut(s) 268
LpnPI CCDG 5 cut(s) 21, 118, 145, 160, 294
MaeII ACGT 1 cut(s) 75
MalI GATC 1 cut(s) 270
MboI GATC 1 cut(s) 268
MboII GAAGA 2 cut(s) 162, 165
MflI RGATCY 1 cut(s) 268
MhlI GDGCHC 2 cut(s) 296, 315
MluCI AATT 1 cut(s) 15
MnlI CCTC 4 cut(s) 43, 171, 174, 282
MseI TTAA 1 cut(s) 204
MspR9I CCNGG 1 cut(s) 133
MvaI CCWGG 1 cut(s) 133
MwoI GCNNNNNNNGC 1 cut(s) 319
NdeII GATC 1 cut(s) 268
NlaIII CATG 1 cut(s) 224
NlaIV GGNNCC 1 cut(s) 6
NspI RCATGY 1 cut(s) 224
PciI ACATGT 1 cut(s) 220
PfeI GAWTC 1 cut(s) 213
PscI ACATGT 1 cut(s) 220
Psp6I CCWGG 1 cut(s) 131
PspGI CCWGG 1 cut(s) 131
PspN4I GGNNCC 1 cut(s) 6
PsuI RGATCY 1 cut(s) 268
SaqAI TTAA 1 cut(s) 204
Sau3AI GATC 1 cut(s) 268
ScrFI CCNGG 1 cut(s) 133
SduI GDGCHC 2 cut(s) 296, 315
SetI ASST 6 cut(s) 10, 78, 117, 156, 279, 344
Sse9I AATT 1 cut(s) 15
SsiI CCGC 1 cut(s) 320
StyD4I CCNGG 1 cut(s) 131
TaaI ACNGT 1 cut(s) 252
TaiI ACGT 1 cut(s) 78
TaqI TCGA 1 cut(s) 290
TasI AATT 1 cut(s) 15
TfiI GAWTC 1 cut(s) 213
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
XceI RCATGY 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.