Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0019122

Physical Location & Seq

Genomic Coordinates Reverse (-)

28028863 .. 28029546

Gene Structure 684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG249100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGAGGATTCCCCTCCTTTCTATCTCATGAGTCCAAGAAACGTAGCATCATCGGAAGTGGAAGGGTTCTTTGAAGAGCTTCGGAATCTAATCCAAAGATTGAGTAGTGAAGCTGCAGCAGGTGGTTCACGCCAGATTTGTCCGAGCAAGATTGCACTGATTGCTTGGTTGGTGCTTATGAAGACATCACAACTTACAGTTACGGGAAGGATGGGGCCAGAATTCTTAAACCAAGTTGTAACATTAGGTATGAGCCTGCTAGCTTCCTCGACCCTGCAAATGTGGCACCACTTCCATCATCGCCACCAATATCTCCGCCTTCACCATCAACCAATACTACAAATTCAGAAGTGGATGATAACAAGCAATGCTGAGGCGAGCCTGAGCTCGCTCCGGTGTGAGGAGACTGGAAATTACCTAGCCTGTCAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

144

Amino Acids

16.33

Weight (kDa)

7.05

Isoelectric Point (pI)

65.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23240 AT4G23240 AT4G23290 AT4G23290 AT4G23320 AT4G23320 AT4G23320
rosa_samantha	Rh2AG249100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	110
Acc36I	ACCTGC	1 cut(s)	110
AccB1I	GGYRCC	1 cut(s)	285
AciI	CCGC	1 cut(s)	316
AcsI	RAATTY	2 cut(s)	221, 342
AfiI	CCNNNNNNNGG	1 cut(s)	400
AgsI	TTSAA	1 cut(s)	74
AluBI	AGCT	4 cut(s)	79, 113, 263, 387
AluI	AGCT	4 cut(s)	79, 113, 263, 387
Alw21I	GWGCWC	1 cut(s)	389
Alw26I	GTCTC	1 cut(s)	398
AoxI	GGCC	1 cut(s)	215
ApeKI	GCWGC	2 cut(s)	113, 116
ApoI	RAATTY	2 cut(s)	221, 342
Asp700I	GAANNNNTTC	1 cut(s)	78
AspS9I	GGNCC	1 cut(s)	215
AsuHPI	GGTGA	1 cut(s)	314
AsuNHI	GCTAGC	1 cut(s)	259
BanI	GGYRCC	1 cut(s)	285
BanII	GRGCYC	1 cut(s)	389
BbsI	GAAGAC	1 cut(s)	188
Bbv12I	GWGCWC	1 cut(s)	389
BbvCI	CCTCAGC	1 cut(s)	372
BbvI	GCAGC	2 cut(s)	100, 128
BccI	CCATC	3 cut(s)	205, 303, 333
BcoDI	GTCTC	1 cut(s)	398
BfaI	CTAG	2 cut(s)	260, 419
BfmI	CTRYAG	1 cut(s)	114
BfuAI	ACCTGC	1 cut(s)	110
BisI	GCNGC	2 cut(s)	114, 117
BlsI	GCNGC	2 cut(s)	115, 118
BmgT120I	GGNCC	1 cut(s)	215
BmiI	GGNNCC	2 cut(s)	216, 287
BmsI	GCATC	1 cut(s)	56
BmtI	GCTAGC	1 cut(s)	263
BpiI	GAAGAC	1 cut(s)	188
Bpu10I	CCTNAGC	2 cut(s)	372, 383
BsaWI	WCCGGW	1 cut(s)	393
Bsc4I	CCNNNNNNNGG	1 cut(s)	400
Bse1I	ACTGG	1 cut(s)	412
Bse3DI	GCAATG	1 cut(s)	373
BseGI	GGATG	2 cut(s)	216, 360
BseLI	CCNNNNNNNGG	1 cut(s)	400
BseMI	GCAATG	1 cut(s)	373
BseMII	CTCAG	2 cut(s)	363, 374
BseNI	ACTGG	1 cut(s)	412
BseRI	GAGGAG	1 cut(s)	416
BseXI	GCAGC	2 cut(s)	100, 128
BshFI	GGCC	1 cut(s)	217
BshNI	GGYRCC	1 cut(s)	285
BsiHKAI	GWGCWC	1 cut(s)	389
BsiSI	CCGG	1 cut(s)	394
BslI	CCNNNNNNNGG	1 cut(s)	400
BsmAI	GTCTC	1 cut(s)	398
BsnI	GGCC	1 cut(s)	217
Bsp1286I	GDGCHC	1 cut(s)	389
BspACI	CCGC	1 cut(s)	316
BspANI	GGCC	1 cut(s)	217
BspCNI	CTCAG	2 cut(s)	364, 375
BspHI	TCATGA	1 cut(s)	27
BspLI	GGNNCC	2 cut(s)	216, 287
BspMAI	CTGCAG	1 cut(s)	118
BspMI	ACCTGC	1 cut(s)	110
BspOI	GCTAGC	1 cut(s)	263
BspQI	GCTCTTC	1 cut(s)	69
BspT107I	GGYRCC	1 cut(s)	285
BsrDI	GCAATG	1 cut(s)	373
BsrI	ACTGG	1 cut(s)	412
Bst4CI	ACNGT	1 cut(s)	199
Bst6I	CTCTTC	1 cut(s)	69
BstAPI	GCANNNNNTGC	1 cut(s)	161
BstC8I	GCNNGC	4 cut(s)	257, 261, 379, 389
BstDEI	CTNAG	2 cut(s)	372, 383
BstF5I	GGATG	2 cut(s)	216, 360
BstMAI	GTCTC	1 cut(s)	398
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 283
BstSFI	CTRYAG	1 cut(s)	114
BstV1I	GCAGC	2 cut(s)	100, 128
BstV2I	GAAGAC	1 cut(s)	188
BsuRI	GGCC	1 cut(s)	217
BtgZI	GCGATG	1 cut(s)	284
BtsCI	GGATG	2 cut(s)	216, 360
BtsIMutI	CAGTG	1 cut(s)	155
BveI	ACCTGC	1 cut(s)	110
Cac8I	GCNNGC	4 cut(s)	257, 261, 379, 389
CciI	TCATGA	1 cut(s)	27
Cfr13I	GGNCC	1 cut(s)	215
CviAII	CATG	1 cut(s)	28
CviJI	RGCY	8 cut(s)	79, 113, 217, 255, 263, 381, 387, 422
CviKI_1	RGCY	8 cut(s)	79, 113, 217, 255, 263, 381, 387, 422
DdeI	CTNAG	2 cut(s)	372, 383
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
EciI	GGCGGA	1 cut(s)	305
Ecl136II	GAGCTC	1 cut(s)	387
Eco24I	GRGCYC	1 cut(s)	389
Eco53kI	GAGCTC	1 cut(s)	387
EcoICRI	GAGCTC	1 cut(s)	387
EcoRI	GAATTC	1 cut(s)	221
EcoT38I	GRGCYC	1 cut(s)	389
FaeI	CATG	1 cut(s)	31
FaiI	YATR	3 cut(s)	29, 179, 251
FatI	CATG	1 cut(s)	27
Fnu4HI	GCNGC	2 cut(s)	114, 117
FokI	GGATG	2 cut(s)	223, 367
FriOI	GRGCYC	1 cut(s)	389
Fsp4HI	GCNGC	2 cut(s)	114, 117
FspBI	CTAG	2 cut(s)	260, 419
GluI	GCNGC	2 cut(s)	114, 117
HaeIII	GGCC	1 cut(s)	217
HapII	CCGG	1 cut(s)	394
Hin1II	CATG	1 cut(s)	31
HinfI	GANTC	3 cut(s)	8, 31, 85
HpaII	CCGG	1 cut(s)	394
HphI	GGTGA	1 cut(s)	314
Hpy166II	GTNNAC	1 cut(s)	128
Hpy188I	TCNGA	4 cut(s)	55, 84, 144, 348
Hpy188III	TCNNGA	1 cut(s)	28
Hpy8I	GTNNAC	1 cut(s)	128
HpyAV	CCTTC	3 cut(s)	56, 201, 329
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	3 cut(s)	116, 155, 277
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 283
HpyF3I	CTNAG	2 cut(s)	372, 383
HpySE526I	ACGT	1 cut(s)	42
Hsp92II	CATG	1 cut(s)	31
LguI	GCTCTTC	1 cut(s)	69
LmnI	GCTCC	1 cut(s)	396
LpnPI	CCDG	8 cut(s)	105, 146, 231, 269, 287, 393, 395, 407
Lsp1109I	GCAGC	2 cut(s)	100, 128
LweI	GCATC	1 cut(s)	56
MaeI	CTAG	2 cut(s)	260, 419
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	2 cut(s)	199, 238
MboII	GAAGA	2 cut(s)	86, 193
MhlI	GDGCHC	1 cut(s)	389
MluCI	AATT	3 cut(s)	221, 342, 412
MlyI	GAGTC	1 cut(s)	40
MnlI	CCTC	4 cut(s)	24, 277, 367, 394
MroXI	GAANNNNTTC	1 cut(s)	78
MseI	TTAA	1 cut(s)	227
MspI	CCGG	1 cut(s)	394
MwoI	GCNNNNNNNGC	2 cut(s)	161, 283
NheI	GCTAGC	1 cut(s)	259
NlaIII	CATG	1 cut(s)	31
NlaIV	GGNNCC	2 cut(s)	216, 287
PagI	TCATGA	1 cut(s)	27
PaqCI	CACCTGC	1 cut(s)	110
PciSI	GCTCTTC	1 cut(s)	69
PdmI	GAANNNNTTC	1 cut(s)	78
PfeI	GAWTC	2 cut(s)	8, 85
PkrI	GCNGC	2 cut(s)	115, 118
PleI	GAGTC	1 cut(s)	39
PpsI	GAGTC	1 cut(s)	39
Psp124BI	GAGCTC	1 cut(s)	389
PspN4I	GGNNCC	2 cut(s)	216, 287
PspPI	GGNCC	1 cut(s)	215
PstI	CTGCAG	1 cut(s)	118
SacI	GAGCTC	1 cut(s)	389
SapI	GCTCTTC	1 cut(s)	69
SaqAI	TTAA	1 cut(s)	227
SatI	GCNGC	2 cut(s)	114, 117
Sau96I	GGNCC	1 cut(s)	215
SchI	GAGTC	1 cut(s)	40
SduI	GDGCHC	1 cut(s)	389
SetI	ASST	8 cut(s)	45, 81, 115, 124, 250, 265, 389, 420
SfaNI	GCATC	1 cut(s)	56
SfcI	CTRYAG	1 cut(s)	114
Sse9I	AATT	3 cut(s)	221, 342, 412
SsiI	CCGC	1 cut(s)	316
SspMI	CTAG	2 cut(s)	260, 419
SstI	GAGCTC	1 cut(s)	389
TaaI	ACNGT	1 cut(s)	199
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	1 cut(s)	269
TasI	AATT	3 cut(s)	221, 342, 412
TfiI	GAWTC	2 cut(s)	8, 85
Tru1I	TTAA	1 cut(s)	227
Tru9I	TTAA	1 cut(s)	227
TscAI	CASTG	1 cut(s)	162
TseI	GCWGC	2 cut(s)	113, 116
TspDTI	ATGAA	1 cut(s)	194
TspRI	CASTG	1 cut(s)	162
XapI	RAATTY	2 cut(s)	221, 342
XmnI	GAANNNNTTC	1 cut(s)	78
XspI	CTAG	2 cut(s)	260, 419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.