Rh2AG312900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0022589
Physical Location & Seq
Forward (+)
40047059 .. 40066673
19615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG312900.1

Sequence Viewer

Length: 326 bp
ATGTCCTCGACGATGATGATGATCGATGAGATTTATGAGTTCTCGGCCCTACGCTTCTTCGATTTCATCAAGGACGAGACCGACAATGACGAGATGAAGGCCGCTCTGGTTACATGTGCATCGCTTATATCAGGCGAGGAACCGAACAAGCATATTGATGTAATGAATCTTCTTATTGATATGGGGATCTACTTTCAAGTACAGATGATGGTCGCATTCTCCTCGCTTTTCTCTAGTTTTATAGTGGAGAGGGTGGGAAAGAGAATTGGCATAAGTTGCCTATTTGCACTCCTCTTCATTGCGCTTCTTCGTACTACCTATGAAAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ceramidase

Protein Analysis

108

Amino Acids

12.36

Weight (kDa)

4.53

Isoelectric Point (pI)

34.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0022589)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0326971 RchiOBHm_Chr4g0400641 RchiOBHm_Chr5g0035441
rosa_samantha Rh2AG312900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 104
AciI CCGC 1 cut(s) 102
AclWI GGATC 1 cut(s) 194
AfaI GTAC 2 cut(s) 201, 313
AflIII ACRYGT 1 cut(s) 113
AgsI TTSAA 1 cut(s) 197
Alw26I GTCTC 1 cut(s) 71
AlwI GGATC 1 cut(s) 194
AoxI GGCC 2 cut(s) 45, 99
AspLEI GCGC 1 cut(s) 304
AspS9I GGNCC 1 cut(s) 46
BarI GAAGNNNNNNTAC 2 cut(s) 153, 185
BccI CCATC 1 cut(s) 202
BcgI CGANNNNNNTGC 2 cut(s) 204, 238
BcoDI GTCTC 1 cut(s) 71
BfaI CTAG 1 cut(s) 234
BisI GCNGC 1 cut(s) 102
BlsI GCNGC 1 cut(s) 103
BmgT120I GGNCC 1 cut(s) 46
BmiI GGNNCC 1 cut(s) 141
BmsI GCATC 1 cut(s) 128
Bsa29I ATCGAT 1 cut(s) 24
BsaBI GATNNNNATC 1 cut(s) 20
BsaI GGTCTC 1 cut(s) 71
Bse3DI GCAATG 1 cut(s) 297
Bse8I GATNNNNATC 1 cut(s) 20
BseCI ATCGAT 1 cut(s) 24
BseJI GATNNNNATC 1 cut(s) 20
BseMI GCAATG 1 cut(s) 297
BseRI GAGGAG 2 cut(s) 211, 281
BshFI GGCC 2 cut(s) 47, 101
BshVI ATCGAT 1 cut(s) 24
BsmAI GTCTC 1 cut(s) 71
BsmI GAATGC 1 cut(s) 215
BsnI GGCC 2 cut(s) 47, 101
Bso31I GGTCTC 1 cut(s) 71
Bsp143I GATC 2 cut(s) 21, 186
BspACI CCGC 1 cut(s) 102
BspANI GGCC 2 cut(s) 47, 101
BspDI ATCGAT 1 cut(s) 24
BspLI GGNNCC 1 cut(s) 141
BspPI GGATC 1 cut(s) 194
BspTNI GGTCTC 1 cut(s) 71
BsrBI CCGCTC 1 cut(s) 104
BsrDI GCAATG 1 cut(s) 297
BssMI GATC 2 cut(s) 21, 186
Bst6I CTCTTC 1 cut(s) 299
BstAPI GCANNNNNTGC 1 cut(s) 276
BstHHI GCGC 1 cut(s) 304
BstKTI GATC 2 cut(s) 24, 189
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 2 cut(s) 21, 186
BstMWI GCNNNNNNNGC 1 cut(s) 276
BstNSI RCATGY 1 cut(s) 117
BstX2I RGATCY 1 cut(s) 186
BstYI RGATCY 1 cut(s) 186
Bsu15I ATCGAT 1 cut(s) 24
BsuRI GGCC 2 cut(s) 47, 101
BsuTUI ATCGAT 1 cut(s) 24
BtgZI GCGATG 1 cut(s) 105
CfoI GCGC 1 cut(s) 304
Cfr13I GGNCC 1 cut(s) 46
ClaI ATCGAT 1 cut(s) 24
Csp6I GTAC 2 cut(s) 200, 312
CviAII CATG 1 cut(s) 114
CviJI RGCY 2 cut(s) 47, 101
CviKI_1 RGCY 2 cut(s) 47, 101
CviQI GTAC 2 cut(s) 200, 312
DpnI GATC 2 cut(s) 23, 188
DpnII GATC 2 cut(s) 21, 186
Eam1104I CTCTTC 1 cut(s) 299
EarI CTCTTC 1 cut(s) 299
Eco31I GGTCTC 1 cut(s) 71
FaeI CATG 1 cut(s) 117
FaiI YATR 8 cut(s) 36, 115, 128, 153, 182, 242, 272, 321
FatI CATG 1 cut(s) 113
Fnu4HI GCNGC 1 cut(s) 102
Fsp4HI GCNGC 1 cut(s) 102
FspBI CTAG 1 cut(s) 234
GlaI GCGC 1 cut(s) 303
GluI GCNGC 1 cut(s) 102
HaeIII GGCC 2 cut(s) 47, 101
HhaI GCGC 1 cut(s) 304
Hin1II CATG 1 cut(s) 117
Hin6I GCGC 1 cut(s) 302
HinP1I GCGC 1 cut(s) 302
HinfI GANTC 1 cut(s) 166
Hpy99I CGWCG 1 cut(s) 13
HpyAV CCTTC 1 cut(s) 91
HpyCH4V TGCA 2 cut(s) 119, 287
HpyF10VI GCNNNNNNNGC 1 cut(s) 276
Hsp92II CATG 1 cut(s) 117
HspAI GCGC 1 cut(s) 302
Kzo9I GATC 2 cut(s) 21, 186
LpnPI CCDG 2 cut(s) 92, 117
LweI GCATC 1 cut(s) 128
MaeI CTAG 1 cut(s) 234
MaeIII GTNAC 1 cut(s) 109
MalI GATC 2 cut(s) 23, 188
MbiI CCGCTC 1 cut(s) 104
MboI GATC 2 cut(s) 21, 186
MboII GAAGA 4 cut(s) 49, 161, 286, 299
MflI RGATCY 1 cut(s) 186
MluCI AATT 1 cut(s) 264
MnlI CCTC 5 cut(s) 16, 130, 232, 243, 302
MslI CAYNNNNRTG 1 cut(s) 156
Mva1269I GAATGC 1 cut(s) 215
MwoI GCNNNNNNNGC 1 cut(s) 276
NdeII GATC 2 cut(s) 21, 186
NlaIII CATG 1 cut(s) 117
NlaIV GGNNCC 1 cut(s) 141
NmeAIII GCCGAG 1 cut(s) 23
NspI RCATGY 1 cut(s) 117
PciI ACATGT 1 cut(s) 113
PctI GAATGC 1 cut(s) 215
PfeI GAWTC 1 cut(s) 166
PkrI GCNGC 1 cut(s) 103
PscI ACATGT 1 cut(s) 113
PspN4I GGNNCC 1 cut(s) 141
PspPI GGNCC 1 cut(s) 46
PsuI RGATCY 1 cut(s) 186
RsaI GTAC 2 cut(s) 201, 313
RsaNI GTAC 2 cut(s) 200, 312
RseI CAYNNNNRTG 1 cut(s) 156
SatI GCNGC 1 cut(s) 102
Sau3AI GATC 2 cut(s) 21, 186
Sau96I GGNCC 1 cut(s) 46
SetI ASST 1 cut(s) 320
SfaNI GCATC 1 cut(s) 128
SmiMI CAYNNNNRTG 1 cut(s) 156
Sse9I AATT 1 cut(s) 264
SsiI CCGC 1 cut(s) 102
SspMI CTAG 1 cut(s) 234
TaqI TCGA 3 cut(s) 8, 24, 60
TaqII GACCGA 1 cut(s) 95
TasI AATT 1 cut(s) 264
TatI WGTACW 1 cut(s) 199
TauI GCSGC 1 cut(s) 104
TfiI GAWTC 1 cut(s) 166
TspDTI ATGAA 4 cut(s) 55, 110, 179, 286
XceI RCATGY 1 cut(s) 117
XspI CTAG 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.