Rh2AG358400

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0031551
Physical Location & Seq
Forward (+)
53073668 .. 53091108
17441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG358400.1

Sequence Viewer

Length: 564 bp
ATGGACAGATCATTTGAGCTCCCACCAGATAGTGACATATCGTTTGTGAGTAGTGGAAGACCAAGTGTGGATCGCATGTATCCTTCTTTCTATGATAGTATGGATTCAGGGAGGAACTCTCGACGTTTGATTGGCTCAGAAACGGAAAACAGAAGCTCTGTGTCATCCAACCCGAGAAGCAAGCATTTTATGGAAATCAACTCTCCACAACTTGAATTTTCACCATCCTCAGTTGATAGTGGAAACTCTTGGTTATCACAAAATAATAATAATAATTTGGAAGATGTGGAGCTTGAGATGAGGAGGCTCAGGCTAGAGCTCAAGAAAACAATGGAGATGTACAATACACCGTGCAAAGAAGCACTGACAGCAAAACATAAGATCGTATGTGAACTTCTGGAACCTCATTGCGCGTGCGCATGGAAAGATGTTTGTGTGAAGCCTGCCGACATTGTTGGTTACATGAATATTGTAGAGTTTCTCTGTTTAATTAAACTTCACCTAGAGGATCAGCTACCACTTCAGGTACTCCACGATCTCCAGACGCAGATAGCTGCCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr Usp

Protein Analysis

187

Amino Acids

21.38

Weight (kDa)

5.4

Isoelectric Point (pI)

63.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031551)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0027839.1_g000001
rosa_samantha Rh2AG358400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 418
AccII CGCG 1 cut(s) 413
AclWI GGATC 2 cut(s) 78, 516
AcsI RAATTY 1 cut(s) 215
AcuI CTGAAG 1 cut(s) 506
AfaI GTAC 2 cut(s) 341, 528
AgsI TTSAA 1 cut(s) 215
AluBI AGCT 6 cut(s) 19, 156, 292, 319, 514, 554
AluI AGCT 6 cut(s) 19, 156, 292, 319, 514, 554
Alw21I GWGCWC 2 cut(s) 21, 321
AlwI GGATC 2 cut(s) 78, 516
Ama87I CYCGRG 1 cut(s) 172
ApeKI GCWGC 1 cut(s) 554
ApoI RAATTY 1 cut(s) 215
ArsI GACNNNNNNTTYG 3 cut(s) 26, 28, 58
AspLEI GCGC 2 cut(s) 413, 419
AsuHPI GGTGA 2 cut(s) 213, 491
AvaI CYCGRG 1 cut(s) 172
BanII GRGCYC 2 cut(s) 21, 321
BarI GAAGNNNNNNTAC 2 cut(s) 378, 410
BbsI GAAGAC 1 cut(s) 64
Bbv12I GWGCWC 2 cut(s) 21, 321
BbvI GCAGC 1 cut(s) 541
BccI CCATC 1 cut(s) 232
BciVI GTATCC 1 cut(s) 90
BfaI CTAG 2 cut(s) 314, 503
BfuI GTATCC 1 cut(s) 90
BisI GCNGC 1 cut(s) 555
BlsI GCNGC 1 cut(s) 556
BmeT110I CYCGRG 1 cut(s) 172
BmiI GGNNCC 1 cut(s) 402
BpiI GAAGAC 1 cut(s) 64
BplI GAGNNNNNCTC 2 cut(s) 103, 135
BpmI CTGGAG 1 cut(s) 524
Bpu10I CCTNAGC 1 cut(s) 308
BpuEI CTTGAG 2 cut(s) 305, 314
Bse3DI GCAATG 1 cut(s) 406
BseGI GGATG 2 cut(s) 164, 224
BseMI GCAATG 1 cut(s) 406
BseMII CTCAG 3 cut(s) 150, 243, 322
BseRI GAGGAG 1 cut(s) 316
BseXI GCAGC 1 cut(s) 541
Bsh1236I CGCG 1 cut(s) 413
BsiHKAI GWGCWC 2 cut(s) 21, 321
BsiHKCI CYCGRG 1 cut(s) 172
BsoBI CYCGRG 1 cut(s) 172
Bsp1286I GDGCHC 2 cut(s) 21, 321
Bsp1407I TGTACA 1 cut(s) 339
Bsp143I GATC 5 cut(s) 8, 70, 381, 508, 535
BspCNI CTCAG 3 cut(s) 149, 242, 321
BspFNI CGCG 1 cut(s) 413
BspLI GGNNCC 1 cut(s) 402
BspPI GGATC 2 cut(s) 78, 516
BsrDI GCAATG 1 cut(s) 406
BsrGI TGTACA 1 cut(s) 339
BssMI GATC 5 cut(s) 8, 70, 381, 508, 535
Bst4CI ACNGT 1 cut(s) 351
BstAUI TGTACA 1 cut(s) 339
BstC8I GCNNGC 3 cut(s) 182, 415, 444
BstDEI CTNAG 3 cut(s) 136, 229, 308
BstF5I GGATG 2 cut(s) 164, 224
BstFNI CGCG 1 cut(s) 413
BstHHI GCGC 2 cut(s) 413, 419
BstKTI GATC 5 cut(s) 11, 73, 384, 511, 538
BstMBI GATC 5 cut(s) 8, 70, 381, 508, 535
BstMWI GCNNNNNNNGC 1 cut(s) 368
BstNSI RCATGY 1 cut(s) 79
BstUI CGCG 1 cut(s) 413
BstV1I GCAGC 1 cut(s) 541
BstV2I GAAGAC 1 cut(s) 64
BsuI GTATCC 1 cut(s) 90
BtsCI GGATG 2 cut(s) 164, 224
BtsIMutI CAGTG 1 cut(s) 362
Cac8I GCNNGC 3 cut(s) 182, 415, 444
CfoI GCGC 2 cut(s) 413, 419
CseI GACGC 1 cut(s) 553
Csp6I GTAC 2 cut(s) 340, 527
CviAII CATG 3 cut(s) 76, 420, 463
CviQI GTAC 2 cut(s) 340, 527
DdeI CTNAG 3 cut(s) 136, 229, 308
DpnI GATC 5 cut(s) 10, 72, 383, 510, 537
DpnII GATC 5 cut(s) 8, 70, 381, 508, 535
Ecl136II GAGCTC 2 cut(s) 19, 319
Eco24I GRGCYC 2 cut(s) 21, 321
Eco53kI GAGCTC 2 cut(s) 19, 319
Eco57I CTGAAG 1 cut(s) 506
Eco88I CYCGRG 1 cut(s) 172
EcoICRI GAGCTC 2 cut(s) 19, 319
EcoT38I GRGCYC 2 cut(s) 21, 321
FaeI CATG 3 cut(s) 79, 423, 466
FaiI YATR 9 cut(s) 38, 77, 93, 101, 191, 378, 388, 421, 464
FatI CATG 3 cut(s) 75, 419, 462
Fnu4HI GCNGC 1 cut(s) 555
FokI GGATG 2 cut(s) 151, 211
FriOI GRGCYC 2 cut(s) 21, 321
Fsp4HI GCNGC 1 cut(s) 555
FspAI RTGCGCAY 1 cut(s) 418
FspBI CTAG 2 cut(s) 314, 503
FspI TGCGCA 1 cut(s) 418
GlaI GCGC 2 cut(s) 412, 418
GluI GCNGC 1 cut(s) 555
GsuI CTGGAG 1 cut(s) 524
HgaI GACGC 1 cut(s) 553
HhaI GCGC 2 cut(s) 413, 419
Hin1II CATG 3 cut(s) 79, 423, 466
Hin6I GCGC 2 cut(s) 411, 417
HinP1I GCGC 2 cut(s) 411, 417
HinfI GANTC 1 cut(s) 104
HphI GGTGA 2 cut(s) 213, 491
Hpy166II GTNNAC 1 cut(s) 392
Hpy188I TCNGA 1 cut(s) 139
Hpy188III TCNNGA 4 cut(s) 120, 322, 398, 541
Hpy8I GTNNAC 1 cut(s) 392
Hpy99I CGWCG 1 cut(s) 126
HpyAV CCTTC 1 cut(s) 93
HpyCH4III ACNGT 1 cut(s) 351
HpyCH4IV ACGT 1 cut(s) 124
HpyCH4V TGCA 1 cut(s) 354
HpyF10VI GCNNNNNNNGC 1 cut(s) 368
HpyF3I CTNAG 3 cut(s) 136, 229, 308
HpySE526I ACGT 1 cut(s) 124
Hsp92II CATG 3 cut(s) 79, 423, 466
HspAI GCGC 2 cut(s) 411, 417
Kzo9I GATC 5 cut(s) 8, 70, 381, 508, 535
LmnI GCTCC 2 cut(s) 24, 289
LpnPI CCDG 7 cut(s) 39, 93, 295, 383, 456, 509, 554
Lsp1109I GCAGC 1 cut(s) 541
MaeI CTAG 2 cut(s) 314, 503
MaeII ACGT 1 cut(s) 124
MaeIII GTNAC 2 cut(s) 32, 458
MalI GATC 5 cut(s) 10, 72, 383, 510, 537
MboI GATC 5 cut(s) 8, 70, 381, 508, 535
MboII GAAGA 2 cut(s) 69, 293
MhlI GDGCHC 2 cut(s) 21, 321
MluCI AATT 3 cut(s) 215, 274, 489
MmeI TCCRAC 1 cut(s) 192
MnlI CCTC 6 cut(s) 105, 238, 294, 297, 414, 499
MseI TTAA 2 cut(s) 488, 492
MvnI CGCG 1 cut(s) 413
MwoI GCNNNNNNNGC 1 cut(s) 368
NdeII GATC 5 cut(s) 8, 70, 381, 508, 535
NlaIII CATG 3 cut(s) 79, 423, 466
NlaIV GGNNCC 1 cut(s) 402
NmuCI GTSAC 1 cut(s) 32
NsbI TGCGCA 1 cut(s) 418
NspI RCATGY 1 cut(s) 79
PacI TTAATTAA 1 cut(s) 492
PfeI GAWTC 1 cut(s) 104
PkrI GCNGC 1 cut(s) 556
Psp124BI GAGCTC 2 cut(s) 21, 321
PspN4I GGNNCC 1 cut(s) 402
RsaI GTAC 2 cut(s) 341, 528
RsaNI GTAC 2 cut(s) 340, 527
SacI GAGCTC 2 cut(s) 21, 321
SaqAI TTAA 2 cut(s) 488, 492
SatI GCNGC 1 cut(s) 555
Sau3AI GATC 5 cut(s) 8, 70, 381, 508, 535
SduI GDGCHC 2 cut(s) 21, 321
SmlI CTYRAG 2 cut(s) 293, 320
SmoI CTYRAG 2 cut(s) 293, 320
Sse9I AATT 3 cut(s) 215, 274, 489
SspI AATATT 1 cut(s) 469
SspMI CTAG 2 cut(s) 314, 503
SstI GAGCTC 2 cut(s) 21, 321
TaaI ACNGT 1 cut(s) 351
TaiI ACGT 1 cut(s) 127
TaqI TCGA 1 cut(s) 121
TasI AATT 3 cut(s) 215, 274, 489
TatI WGTACW 1 cut(s) 339
TfiI GAWTC 1 cut(s) 104
Tru1I TTAA 2 cut(s) 488, 492
Tru9I TTAA 2 cut(s) 488, 492
TscAI CASTG 1 cut(s) 369
TseFI GTSAC 1 cut(s) 32
TseI GCWGC 1 cut(s) 554
Tsp45I GTSAC 1 cut(s) 32
TspDTI ATGAA 1 cut(s) 479
TspGWI ACGGA 1 cut(s) 158
TspRI CASTG 1 cut(s) 369
XapI RAATTY 1 cut(s) 215
XceI RCATGY 1 cut(s) 79
XspI CTAG 2 cut(s) 314, 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.